mRNA_D-dudresnayi_contig10228.269.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10228.269.1
Unique NamemRNA_D-dudresnayi_contig10228.269.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10228.269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10228contigD-dudresnayi_contig10228:8564..9667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1104
Cds size795
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10228.269.1prot_D-dudresnayi_contig10228.269.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10228 8720..9514 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.580458-UTR-D-dudresnayi_contig10228:8563..87191622927523.580458-UTR-D-dudresnayi_contig10228:8563..8719Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10228 8564..8719 +
1690556791.4329138-UTR-D-dudresnayi_contig10228:8563..87191690556791.4329138-UTR-D-dudresnayi_contig10228:8563..8719Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10228 8564..8719 +
1622927523.601184-UTR-D-dudresnayi_contig10228:9514..96671622927523.601184-UTR-D-dudresnayi_contig10228:9514..9667Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10228 9515..9667 +
1690556791.4520218-UTR-D-dudresnayi_contig10228:9514..96671690556791.4520218-UTR-D-dudresnayi_contig10228:9514..9667Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10228 9515..9667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.591692-CDS-D-dudresnayi_contig10228:8719..95141622927523.591692-CDS-D-dudresnayi_contig10228:8719..9514Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10228 8720..9514 +
1690556791.4422524-CDS-D-dudresnayi_contig10228:8719..95141690556791.4422524-CDS-D-dudresnayi_contig10228:8719..9514Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10228 8720..9514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10228.269.1

>prot_D-dudresnayi_contig10228.269.1 ID=prot_D-dudresnayi_contig10228.269.1|Name=mRNA_D-dudresnayi_contig10228.269.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=265bp
MLEDAILTKGELVCDRFFKAGFGGTEDVVSDMLVHRNPEKGVDNQYDYNA
EPCAYSFASPYVLRRLLQLKDNMLATEARNKYSAGTFRGGDDGCEFEFLC
LHGFKISGVKFLALPLTDGAQETTVTFPAKQVLALNWREQERYLQAEVLY
IPPYGNLESGDSFCLIKINGRWTLVILQCTIAEHHPVKQNGVKIIRDCYL
KNPELKIDDTVIMFMIPAKGKLNTKQLMVTQKKEEGVLEEVKRVTITVAA
QYKIENKLSTVDDI*
back to top

mRNA from alignment at D-dudresnayi_contig10228:8564..9667+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10228.269.1 ID=mRNA_D-dudresnayi_contig10228.269.1|Name=mRNA_D-dudresnayi_contig10228.269.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1104bp|location=Sequence derived from alignment at D-dudresnayi_contig10228:8564..9667+ (Desmarestia dudresnayi DdudBR16 monoicous)
TCCTGGGAAGAGCAGGCCGACTTCTTCAATTCAACTCAGTTTGAGGTTGA
ATATGGAAAGGAAGCTGGACAGCGCGCCTACAACAACATCCAGTTCTTTG
GTGGAGCCATCCGCAATAACATCCGAACCGCATTGCTTGGAAAAGATCCC
GCGCGAATGCTCGAAGATGCAATACTAACCAAGGGAGAACTTGTGTGTGA
TCGCTTCTTTAAAGCCGGCTTTGGCGGCACCGAAGATGTTGTGTCAGACA
TGCTTGTGCACCGAAACCCGGAGAAGGGGGTGGACAACCAATACGACTAC
AATGCTGAGCCGTGCGCCTACTCATTTGCCTCTCCGTACGTGCTTCGGCG
CCTCCTCCAACTGAAAGACAACATGCTCGCTACTGAGGCGCGCAACAAAT
ACAGTGCTGGCACCTTTCGCGGTGGCGATGATGGGTGCGAGTTTGAGTTT
CTCTGTCTTCACGGTTTCAAGATCTCGGGTGTGAAGTTCCTTGCGCTACC
TCTCACTGACGGTGCACAAGAGACCACGGTGACTTTCCCGGCCAAGCAAG
TGTTGGCGCTCAACTGGCGAGAACAGGAGCGCTACTTGCAGGCGGAAGTA
CTGTACATTCCCCCCTACGGTAACCTCGAGTCTGGCGACTCATTCTGCCT
GATCAAGATCAACGGGAGATGGACCCTGGTGATTCTTCAGTGCACCATTG
CTGAGCATCACCCGGTGAAGCAGAACGGTGTGAAGATCATCCGTGACTGT
TACTTGAAGAACCCAGAGCTGAAGATCGACGATACGGTAATCATGTTTAT
GATACCGGCGAAAGGCAAGCTCAACACCAAGCAACTCATGGTGACGCAGA
AGAAAGAAGAAGGAGTGCTGGAGGAGGTTAAACGAGTCACCATCACAGTC
GCTGCACAGTACAAGATTGAAAACAAGCTATCCACCGTTGATGACATTTA
ATTTGTTTGCATTAGCTTTCTGTGCGCATAATTTCAAATGGAAAAACAAG
TAAGCAAATTCGGATTCCATAAAAGCAAATAAATTTTCTTAAAACTTCAA
TGCATAAGAAGACTAGAAAATGAGTCCGTACAATTGAGAATTCATGAAAT
CCAG
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10228:8564..9667+

>mRNA_D-dudresnayi_contig10228.269.1 ID=mRNA_D-dudresnayi_contig10228.269.1|Name=mRNA_D-dudresnayi_contig10228.269.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at D-dudresnayi_contig10228:8564..9667+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCTCGAAGATGCAATACTAACCAAGGGAGAACTTGTGTGTGATCGCTT
CTTTAAAGCCGGCTTTGGCGGCACCGAAGATGTTGTGTCAGACATGCTTG
TGCACCGAAACCCGGAGAAGGGGGTGGACAACCAATACGACTACAATGCT
GAGCCGTGCGCCTACTCATTTGCCTCTCCGTACGTGCTTCGGCGCCTCCT
CCAACTGAAAGACAACATGCTCGCTACTGAGGCGCGCAACAAATACAGTG
CTGGCACCTTTCGCGGTGGCGATGATGGGTGCGAGTTTGAGTTTCTCTGT
CTTCACGGTTTCAAGATCTCGGGTGTGAAGTTCCTTGCGCTACCTCTCAC
TGACGGTGCACAAGAGACCACGGTGACTTTCCCGGCCAAGCAAGTGTTGG
CGCTCAACTGGCGAGAACAGGAGCGCTACTTGCAGGCGGAAGTACTGTAC
ATTCCCCCCTACGGTAACCTCGAGTCTGGCGACTCATTCTGCCTGATCAA
GATCAACGGGAGATGGACCCTGGTGATTCTTCAGTGCACCATTGCTGAGC
ATCACCCGGTGAAGCAGAACGGTGTGAAGATCATCCGTGACTGTTACTTG
AAGAACCCAGAGCTGAAGATCGACGATACGGTAATCATGTTTATGATACC
GGCGAAAGGCAAGCTCAACACCAAGCAACTCATGGTGACGCAGAAGAAAG
AAGAAGGAGTGCTGGAGGAGGTTAAACGAGTCACCATCACAGTCGCTGCA
CAGTACAAGATTGAAAACAAGCTATCCACCGTTGATGACATTTAAATGCT
CGAAGATGCAATACTAACCAAGGGAGAACTTGTGTGTGATCGCTTCTTTA
AAGCCGGCTTTGGCGGCACCGAAGATGTTGTGTCAGACATGCTTGTGCAC
CGAAACCCGGAGAAGGGGGTGGACAACCAATACGACTACAATGCTGAGCC
GTGCGCCTACTCATTTGCCTCTCCGTACGTGCTTCGGCGCCTCCTCCAAC
TGAAAGACAACATGCTCGCTACTGAGGCGCGCAACAAATACAGTGCTGGC
ACCTTTCGCGGTGGCGATGATGGGTGCGAGTTTGAGTTTCTCTGTCTTCA
CGGTTTCAAGATCTCGGGTGTGAAGTTCCTTGCGCTACCTCTCACTGACG
GTGCACAAGAGACCACGGTGACTTTCCCGGCCAAGCAAGTGTTGGCGCTC
AACTGGCGAGAACAGGAGCGCTACTTGCAGGCGGAAGTACTGTACATTCC
CCCCTACGGTAACCTCGAGTCTGGCGACTCATTCTGCCTGATCAAGATCA
ACGGGAGATGGACCCTGGTGATTCTTCAGTGCACCATTGCTGAGCATCAC
CCGGTGAAGCAGAACGGTGTGAAGATCATCCGTGACTGTTACTTGAAGAA
CCCAGAGCTGAAGATCGACGATACGGTAATCATGTTTATGATACCGGCGA
AAGGCAAGCTCAACACCAAGCAACTCATGGTGACGCAGAAGAAAGAAGAA
GGAGTGCTGGAGGAGGTTAAACGAGTCACCATCACAGTCGCTGCACAGTA
CAAGATTGAAAACAAGCTATCCACCGTTGATGACATTTAA
back to top