mRNA_D-dudresnayi_contig10228.268.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10228.268.1
Unique NamemRNA_D-dudresnayi_contig10228.268.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10228.268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10228contigD-dudresnayi_contig10228:7790..8235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size308
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10228.268.1prot_D-dudresnayi_contig10228.268.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10228 7790..8233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.5206301-CDS-D-dudresnayi_contig10228:7789..78131622927523.5206301-CDS-D-dudresnayi_contig10228:7789..7813Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10228 7790..7813 +
1690556791.4033995-CDS-D-dudresnayi_contig10228:7789..78131690556791.4033995-CDS-D-dudresnayi_contig10228:7789..7813Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10228 7790..7813 +
1622927523.5320592-CDS-D-dudresnayi_contig10228:7877..79741622927523.5320592-CDS-D-dudresnayi_contig10228:7877..7974Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10228 7878..7974 +
1690556791.414202-CDS-D-dudresnayi_contig10228:7877..79741690556791.414202-CDS-D-dudresnayi_contig10228:7877..7974Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10228 7878..7974 +
1622927523.5424826-CDS-D-dudresnayi_contig10228:8048..82331622927523.5424826-CDS-D-dudresnayi_contig10228:8048..8233Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10228 8049..8233 +
1690556791.4235277-CDS-D-dudresnayi_contig10228:8048..82331690556791.4235277-CDS-D-dudresnayi_contig10228:8048..8233Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10228 8049..8233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10228.268.1

>prot_D-dudresnayi_contig10228.268.1 ID=prot_D-dudresnayi_contig10228.268.1|Name=mRNA_D-dudresnayi_contig10228.268.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=102bp
TSSDSDPESLPATIASLKEKNRNAFPDLKLEKLKYERQTTVEIVIKEDGK
FLDLTDVPDPLKLRSGLGKYLYRRNCYDELTKDILTSLPRLRCKTIAILG
TA
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mRNA from alignment at D-dudresnayi_contig10228:7790..8235+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10228.268.1 ID=mRNA_D-dudresnayi_contig10228.268.1|Name=mRNA_D-dudresnayi_contig10228.268.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=446bp|location=Sequence derived from alignment at D-dudresnayi_contig10228:7790..8235+ (Desmarestia dudresnayi DdudBR16 monoicous)
ACTTCTTCTGATTCTGATCCCGAGGTCACTTCCCTTATTTACCATACAAT
CTATCTGTTCTTTATTATTGTTTTACAACACATTTTAGAGTTTGCCCGCA
ACAATAGCTTCGCTAAAGGAAAAGAATAGAAATGCCTTCCCTGATCTAAA
GTTGGAGAAATTGAAATATGAGCGTCAAACCACAGGTAAGACAATGCATG
ATCGGATTACTTTCATCACGTTCATTGTTATCTGGTATGTTTACATGTAC
ATGTTTTAGTGGAGATAGTAATCAAGGAGGATGGCAAGTTCTTGGATCTC
ACCGACGTACCCGATCCGCTGAAGTTGCGCTCAGGCCTCGGAAAATACCT
ATATCGCCGCAACTGCTACGATGAGTTGACTAAAGACATCCTCACTTCCT
TGCCGCGTTTGCGTTGCAAAACTATTGCCATCCTGGGAACTGCCGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10228:7790..8235+

>mRNA_D-dudresnayi_contig10228.268.1 ID=mRNA_D-dudresnayi_contig10228.268.1|Name=mRNA_D-dudresnayi_contig10228.268.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at D-dudresnayi_contig10228:7790..8235+ (Desmarestia dudresnayi DdudBR16 monoicous)
ACTTCTTCTGATTCTGATCCCGAGACTTCTTCTGATTCTGATCCCGAGAG
TTTGCCCGCAACAATAGCTTCGCTAAAGGAAAAGAATAGAAATGCCTTCC
CTGATCTAAAGTTGGAGAAATTGAAATATGAGCGTCAAACCACAGAGTTT
GCCCGCAACAATAGCTTCGCTAAAGGAAAAGAATAGAAATGCCTTCCCTG
ATCTAAAGTTGGAGAAATTGAAATATGAGCGTCAAACCACAGTGGAGATA
GTAATCAAGGAGGATGGCAAGTTCTTGGATCTCACCGACGTACCCGATCC
GCTGAAGTTGCGCTCAGGCCTCGGAAAATACCTATATCGCCGCAACTGCT
ACGATGAGTTGACTAAAGACATCCTCACTTCCTTGCCGCGTTTGCGTTGC
AAAACTATTGCCATCCTGGGAACTGCCTGGAGATAGTAATCAAGGAGGAT
GGCAAGTTCTTGGATCTCACCGACGTACCCGATCCGCTGAAGTTGCGCTC
AGGCCTCGGAAAATACCTATATCGCCGCAACTGCTACGATGAGTTGACTA
AAGACATCCTCACTTCCTTGCCGCGTTTGCGTTGCAAAACTATTGCCATC
CTGGGAACTGCC
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