mRNA_D-dudresnayi_contig10223.265.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10223.265.1
Unique NamemRNA_D-dudresnayi_contig10223.265.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10223.265.1 vs. uniprot
Match: D7FPM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM9_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 5.030e-16
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 1
Query:    1 DRCVQVVGKAMFFEGLSVFPVLYLDDDLCVFQFKAAGTVVASHRV 135
            D  VQ  GKAMFF+GLSVFPV YLDDD CVF+FKAAGTVVAS R+
Sbjct:  222 DGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRI 266          
BLAST of mRNA_D-dudresnayi_contig10223.265.1 vs. uniprot
Match: A0A6U0ESK7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0ESK7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.050e-7
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 1
Query:    4 RCVQVVGKAMFFEGLSVFPVLYLDDDLCVFQFKAAGTVVASHRV 135
            + +  +GK  F E +SVFP+ YLDDDLCVF F+  GT + + +V
Sbjct:  245 QVITTIGKLFFLEQVSVFPISYLDDDLCVFDFELLGTRICARKV 288          
BLAST of mRNA_D-dudresnayi_contig10223.265.1 vs. uniprot
Match: A0A7S1YML6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YML6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.270e-7
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 1
Query:   19 VGKAMFFEGLSVFPVLYLDDDLCVFQFKAAGTVVASHRV 135
            VG  MF E +SVFPV Y+DDDLCVF F+  GT + + ++
Sbjct:  247 VGNLMFLESVSVFPVSYMDDDLCVFDFELLGTRIVARKI 285          
BLAST of mRNA_D-dudresnayi_contig10223.265.1 vs. uniprot
Match: A0A7S3ANS9_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ANS9_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 7.280e-7
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1
Query:   10 VQVVGKAMFFEGLSVFPVLYLDDDLCVFQFKA 105
            VQ +G+A F EGLSVFPV YL DDLC+F F+A
Sbjct:  142 VQALGRAGFIEGLSVFPVRYLQDDLCIFNFQA 173          
BLAST of mRNA_D-dudresnayi_contig10223.265.1 vs. uniprot
Match: A0A2V0NSK0_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NSK0_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 1.860e-6
Identity = 24/45 (53.33%), Postives = 28/45 (62.22%), Query Frame = 1
Query:    1 DRCVQVVGKAMFFEGLSVFPVLYLDDDLCVFQFKAAGTVVASHRV 135
            D  +  VG+A FF  LSVFPVLYLD DL VFQF    + +   RV
Sbjct:  230 DSLIDSVGRAFFFPQLSVFPVLYLDQDLAVFQFTPLSSNICVWRV 274          
BLAST of mRNA_D-dudresnayi_contig10223.265.1 vs. uniprot
Match: A0A835Z4A1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4A1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.340e-6
Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 1
Query:    1 DRCVQVVGKAMFFEGLSVFPVLYLDDDLCVFQFKAAGTVVASHR 132
            D  +Q  G+ +F + LS FP+ YLD+DLCVF F    T +A+ R
Sbjct:  203 DSVIQAAGEGLFIKPLSYFPIKYLDEDLCVFDFPPLNTRIAARR 246          
BLAST of mRNA_D-dudresnayi_contig10223.265.1 vs. uniprot
Match: A0A6V1TFF4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TFF4_HETAK)

HSP 1 Score: 50.8 bits (120), Expect = 2.410e-6
Identity = 20/45 (44.44%), Postives = 29/45 (64.44%), Query Frame = 1
Query:    1 DRCVQVVGKAMFFEGLSVFPVLYLDDDLCVFQFKAAGTVVASHRV 135
            D  VQ +GKA F E  S+FP+ YLD+ LC+F+F   G  + + +V
Sbjct:  129 DVLVQNIGKAGFLESFSIFPLQYLDETLCIFEFPPLGVKIVASKV 173          
BLAST of mRNA_D-dudresnayi_contig10223.265.1 vs. uniprot
Match: A0A061R8Z4_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R8Z4_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 6.490e-6
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 1
Query:    1 DRCVQVVGKAMFFEGLSVFPVLYLDDDLCVFQFKAAGTVVASHRV 135
            DR V  +G+A FF   SVFPVLYLDD+L VF+F    + +   R+
Sbjct:  214 DRLVGSMGRAAFFPSFSVFPVLYLDDELAVFRFDPIRSCIGVQRM 258          
BLAST of mRNA_D-dudresnayi_contig10223.265.1 vs. uniprot
Match: A0A0G4HTV7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HTV7_9ALVE)

HSP 1 Score: 50.1 bits (118), Expect = 9.430e-6
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1
Query:    1 DRCVQVVGKAMFFEGLSVFPVLYLDDDLCVFQFKAAGTVVASHR 132
            D  VQ +G+  FFE LS+FPV +LDD LC+F F+A    + + R
Sbjct:  246 DVVVQKLGELTFFENLSLFPVRFLDDRLCLFDFEAVSLPIVAKR 289          
BLAST of mRNA_D-dudresnayi_contig10223.265.1 vs. uniprot
Match: K0R912_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R912_THAOC)

HSP 1 Score: 47.8 bits (112), Expect = 5.410e-5
Identity = 18/41 (43.90%), Postives = 28/41 (68.29%), Query Frame = 1
Query:   10 VQVVGKAMFFEGLSVFPVLYLDDDLCVFQFKAAGTVVASHR 132
            ++ +G+ +F E  SVFP+ YLDDDL VF F+  GT + + +
Sbjct:  190 IRNIGRQLFIEAWSVFPISYLDDDLIVFDFELLGTRICARK 230          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10223.265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FPM9_ECTSI5.030e-1677.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U0ESK7_9STRA2.050e-747.73Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1YML6_9STRA5.270e-753.85Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3ANS9_9EUKA7.280e-768.75Hypothetical protein n=2 Tax=Haptolina ericina Tax... [more]
A0A2V0NSK0_9CHLO1.860e-653.33Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A835Z4A1_9STRA2.340e-645.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1TFF4_HETAK2.410e-644.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A061R8Z4_9CHLO6.490e-648.89Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]
A0A0G4HTV7_9ALVE9.430e-647.73Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
K0R912_THAOC5.410e-543.90Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10223contigD-dudresnayi_contig10223:9923..10069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog2880.D7FPM9
EggNOG OGs2E057@1,2S7KT@2759
Ec32 orthologEc-16_001370.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-16_001370.2
Exons1
Model size147
Cds size117
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.4052162-CDS-D-dudresnayi_contig10223:9922..100391622927523.4052162-CDS-D-dudresnayi_contig10223:9922..10039Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10223 9923..10039 -
1690556791.361976-CDS-D-dudresnayi_contig10223:9922..100391690556791.361976-CDS-D-dudresnayi_contig10223:9922..10039Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10223 9923..10039 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.417176-UTR-D-dudresnayi_contig10223:10039..100691622927523.417176-UTR-D-dudresnayi_contig10223:10039..10069Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10223 10040..10069 -
1690556791.3725805-UTR-D-dudresnayi_contig10223:10039..100691690556791.3725805-UTR-D-dudresnayi_contig10223:10039..10069Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10223 10040..10069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10223.265.1prot_D-dudresnayi_contig10223.265.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10223 9923..10039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10223.265.1

>prot_D-dudresnayi_contig10223.265.1 ID=prot_D-dudresnayi_contig10223.265.1|Name=mRNA_D-dudresnayi_contig10223.265.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=39bp
MFFEGLSVFPVLYLDDDLCVFQFKAAGTVVASHRVVDD*
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mRNA from alignment at D-dudresnayi_contig10223:9923..10069-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10223.265.1 ID=mRNA_D-dudresnayi_contig10223.265.1|Name=mRNA_D-dudresnayi_contig10223.265.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at D-dudresnayi_contig10223:9923..10069- (Desmarestia dudresnayi DdudBR16 monoicous)
GATAGGTGTGTGCAGGTGGTCGGGAAGGCTATGTTTTTCGAGGGACTGTC GGTGTTCCCGGTGTTGTACCTCGATGACGACCTTTGCGTATTCCAGTTCA AAGCTGCGGGGACGGTCGTGGCTTCGCATCGCGTAGTTGACGACTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10223:9923..10069-

>mRNA_D-dudresnayi_contig10223.265.1 ID=mRNA_D-dudresnayi_contig10223.265.1|Name=mRNA_D-dudresnayi_contig10223.265.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at D-dudresnayi_contig10223:9923..10069- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTTTTCGAGGGACTGTCGGTGTTCCCGGTGTTGTACCTCGATGACGA
CCTTTGCGTATTCCAGTTCAAAGCTGCGGGGACGGTCGTGGCTTCGCATC
GCGTAGTTGACGACTAGATGTTTTTCGAGGGACTGTCGGTGTTCCCGGTG
TTGTACCTCGATGACGACCTTTGCGTATTCCAGTTCAAAGCTGCGGGGAC
GGTCGTGGCTTCGCATCGCGTAGTTGACGACTAG
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