mRNA_D-dudresnayi_contig10220.260.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10220.260.1
Unique NamemRNA_D-dudresnayi_contig10220.260.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10220.260.1 vs. uniprot
Match: A0A812MGG9_SYMMI (RIM-C protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A812MGG9_SYMMI)

HSP 1 Score: 187 bits (476), Expect = 7.130e-60
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:   34 MVNVPKERKTFCKGKKCTKHTLHKVTQYKAGKASNFAQGKRRYDSKQKGFGGQTKPVFHKKAKTTKKITLRLECKECKTKKQLCIKRTKHFELGEKKKTT 333
            MVNVPKERKTFCKGKKC KHTLHKVTQYK+GKASNFAQGKRRYD KQ GFGGQTKPVFHKKAKTTKKITLRLECKECK KKQLCIKRTKHFELGEKKK +
Sbjct:    1 MVNVPKERKTFCKGKKCGKHTLHKVTQYKSGKASNFAQGKRRYDHKQMGFGGQTKPVFHKKAKTTKKITLRLECKECKAKKQLCIKRTKHFELGEKKKVS 100
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BLAST of mRNA_D-dudresnayi_contig10220.260.1 vs. uniprot
Match: A0A7S3NIT2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIT2_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.730e-58
Identity = 88/103 (85.44%), Postives = 97/103 (94.17%), Query Frame = 1 
Query:   34 MVNVPKERKTFCKGKKCTKHTLHKVTQYKAGKASNFAQGKRRYDSKQKGFGGQTKPVFHKKAKTTKKITLRLECKECKTKKQLCIKRTKHFELGEKKKTTGGY 342
            MVNVPKER+T+CKGKKC KHT+HKVTQYKAGKASNFAQGKRRYD+KQ+G+GGQTKP+FHKKAKTTKK+ LRLECKECK KKQLCIKR KHFELGEKKK+T  Y
Sbjct:    1 MVNVPKERRTYCKGKKCKKHTVHKVTQYKAGKASNFAQGKRRYDAKQQGYGGQTKPIFHKKAKTTKKVVLRLECKECKAKKQLCIKRCKHFELGEKKKSTTQY 103
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BLAST of mRNA_D-dudresnayi_contig10220.260.1 vs. uniprot
Match: A0A7S2UXA0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXA0_9STRA)

HSP 1 Score: 183 bits (465), Expect = 3.610e-58
Identity = 89/101 (88.12%), Postives = 95/101 (94.06%), Query Frame = 1 
Query:   34 MVNVPKERKTFCKGKKCTKHTLHKVTQYKAGKASNFAQGKRRYDSKQKGFGGQTKPVFHKKAKTTKKITLRLECKECKTKKQLCIKRTKHFELGEKKKTTG 336
            MVNVPKER+T+CK K C KHT+HKVTQYKAGKASNFAQGKRRYD KQKG+GGQTKP+FHKKAKTTKKI LRLECKECKTKKQL IKRTKHFELGEKKK+TG
Sbjct:    1 MVNVPKERRTYCKAKNCNKHTIHKVTQYKAGKASNFAQGKRRYDHKQKGYGGQTKPIFHKKAKTTKKIVLRLECKECKTKKQLVIKRTKHFELGEKKKSTG 101
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BLAST of mRNA_D-dudresnayi_contig10220.260.1 vs. uniprot
Match: F0YGF9_AURAN (RL44_PICJA 60S ribosomal protein L44 n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YGF9_AURAN)

HSP 1 Score: 183 bits (464), Expect = 5.130e-58
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:   34 MVNVPKERKTFCKGKKCTKHTLHKVTQYKAGKASNFAQGKRRYDSKQKGFGGQTKPVFHKKAKTTKKITLRLECKECKTKKQLCIKRTKHFELGEKKKTTG 336
            MVNVPKERKT+CK KKC KHT HKVTQYKAGKASNFAQGKRRYD KQ GFGGQTKPVFHKKAKTTKK+TLRLECKECK KKQL IKR KHFELGEKKKTTG
Sbjct:    1 MVNVPKERKTYCKAKKCRKHTTHKVTQYKAGKASNFAQGKRRYDMKQMGFGGQTKPVFHKKAKTTKKVTLRLECKECKAKKQLTIKRCKHFELGEKKKTTG 101
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BLAST of mRNA_D-dudresnayi_contig10220.260.1 vs. uniprot
Match: W7TXG3_9STRA (60s ribosomal protein l44 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXG3_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.090e-57
Identity = 88/101 (87.13%), Postives = 95/101 (94.06%), Query Frame = 1 
Query:   34 MVNVPKERKTFCKGKKCTKHTLHKVTQYKAGKASNFAQGKRRYDSKQKGFGGQTKPVFHKKAKTTKKITLRLECKECKTKKQLCIKRTKHFELGEKKKTTG 336
            MV +PKERKTFCKGKKC KHT+HKVTQYKAGKASN+AQGKRRYD KQ+G+GGQTKP+ HKKAKTTKK+TLRLECKECKTKKQL IKRTKHFELGEKKK TG
Sbjct:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATG 101
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BLAST of mRNA_D-dudresnayi_contig10220.260.1 vs. uniprot
Match: A0A835YP36_9STRA (Zinc-binding ribosomal protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP36_9STRA)

HSP 1 Score: 180 bits (457), Expect = 6.000e-57
Identity = 87/101 (86.14%), Postives = 95/101 (94.06%), Query Frame = 1 
Query:   34 MVNVPKERKTFCKGKKCTKHTLHKVTQYKAGKASNFAQGKRRYDSKQKGFGGQTKPVFHKKAKTTKKITLRLECKECKTKKQLCIKRTKHFELGEKKKTTG 336
            MVNVPKER+T+CK KKC KHT+HKV+QYK+GKASNFAQGKRRYDSKQKG+GGQTKP+FHKKAKTTKK+TLRLECKECK KKQL IKR KHFELGEKKK TG
Sbjct:    1 MVNVPKERRTYCKSKKCGKHTVHKVSQYKSGKASNFAQGKRRYDSKQKGYGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKKATG 101
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BLAST of mRNA_D-dudresnayi_contig10220.260.1 vs. uniprot
Match: A0A485LSL1_9STRA (Aste57867_25253 protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LSL1_9STRA)

HSP 1 Score: 178 bits (452), Expect = 3.470e-56
Identity = 87/101 (86.14%), Postives = 95/101 (94.06%), Query Frame = 1 
Query:   34 MVNVPKERKTFCKGKKCTKHTLHKVTQYKAGKASNFAQGKRRYDSKQKGFGGQTKPVFHKKAKTTKKITLRLECKECKTKKQLCIKRTKHFELGEKKKTTG 336
            MVN+PKER+TFCKGKKC KHT+HKVTQYKAGKAS FAQG RRY+ KQ+GFGGQTKPVFHKKAKTTKKITLR+ECKECK KKQL IKRTKHFELGEKKK++G
Sbjct:    1 MVNIPKERRTFCKGKKCRKHTVHKVTQYKAGKASKFAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPIKRTKHFELGEKKKSSG 101
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BLAST of mRNA_D-dudresnayi_contig10220.260.1 vs. uniprot
Match: A0A6A3E4F4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3E4F4_9STRA)

HSP 1 Score: 179 bits (455), Expect = 5.410e-56
Identity = 86/101 (85.15%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:   34 MVNVPKERKTFCKGKKCTKHTLHKVTQYKAGKASNFAQGKRRYDSKQKGFGGQTKPVFHKKAKTTKKITLRLECKECKTKKQLCIKRTKHFELGEKKKTTG 336
            MVN+PKER+TFCKGKKC KHT+HK+TQYKAGKAS +AQG RRY+ KQKGFGGQTKPVFHKKAKTTKK+TLR+ECKECKTKKQL +KRTKHFELGEKKK+TG
Sbjct:   48 MVNMPKERRTFCKGKKCQKHTVHKITQYKAGKASKYAQGARRYNDKQKGFGGQTKPVFHKKAKTTKKVTLRMECKECKTKKQLPMKRTKHFELGEKKKSTG 148
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BLAST of mRNA_D-dudresnayi_contig10220.260.1 vs. uniprot
Match: H3GAG5_PHYRM (Uncharacterized protein n=18 Tax=Oomycota TaxID=4762 RepID=H3GAG5_PHYRM)

HSP 1 Score: 177 bits (448), Expect = 1.410e-55
Identity = 85/101 (84.16%), Postives = 95/101 (94.06%), Query Frame = 1 
Query:   34 MVNVPKERKTFCKGKKCTKHTLHKVTQYKAGKASNFAQGKRRYDSKQKGFGGQTKPVFHKKAKTTKKITLRLECKECKTKKQLCIKRTKHFELGEKKKTTG 336
            MVN+PKER+T+CKGKKC KHT+HK+TQYKAGKAS +AQG RRY+ KQKGFGGQTKPVFHKKAKTTKKITLR+ECKECKTKKQL +KRTKHFELGEKKK+ G
Sbjct:    1 MVNMPKERRTYCKGKKCQKHTVHKITQYKAGKASKYAQGARRYNDKQKGFGGQTKPVFHKKAKTTKKITLRMECKECKTKKQLPMKRTKHFELGEKKKSAG 101
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BLAST of mRNA_D-dudresnayi_contig10220.260.1 vs. uniprot
Match: A0A418ASI0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418ASI0_9STRA)

HSP 1 Score: 177 bits (449), Expect = 3.660e-55
Identity = 86/101 (85.15%), Postives = 95/101 (94.06%), Query Frame = 1 
Query:   34 MVNVPKERKTFCKGKKCTKHTLHKVTQYKAGKASNFAQGKRRYDSKQKGFGGQTKPVFHKKAKTTKKITLRLECKECKTKKQLCIKRTKHFELGEKKKTTG 336
            MVN+PKER+TFCKGKKC KHT+HKVTQYKAGKAS +AQG RRY+ KQ+GFGGQTKPVFHKKAKTTKKITLR+ECKECK KKQL IKRTKHFELGEKKK++G
Sbjct:   42 MVNIPKERRTFCKGKKCRKHTVHKVTQYKAGKASKYAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPIKRTKHFELGEKKKSSG 142
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10220.260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812MGG9_SYMMI7.130e-6093.00RIM-C protein n=3 Tax=cellular organisms TaxID=131... [more]
A0A7S3NIT2_9STRA1.730e-5885.44Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2UXA0_9STRA3.610e-5888.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YGF9_AURAN5.130e-5890.10RL44_PICJA 60S ribosomal protein L44 n=2 Tax=Pelag... [more]
W7TXG3_9STRA2.090e-5787.1360s ribosomal protein l44 n=2 Tax=Monodopsidaceae ... [more]
A0A835YP36_9STRA6.000e-5786.14Zinc-binding ribosomal protein n=1 Tax=Tribonema m... [more]
A0A485LSL1_9STRA3.470e-5686.14Aste57867_25253 protein n=7 Tax=Saprolegniaceae Ta... [more]
A0A6A3E4F4_9STRA5.410e-5685.15Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
H3GAG5_PHYRM1.410e-5584.16Uncharacterized protein n=18 Tax=Oomycota TaxID=47... [more]
A0A418ASI0_9STRA3.660e-5585.15Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10220contigD-dudresnayi_contig10220:4543..5085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue2.5e-44
Seed eggNOG ortholog44056.XP_009039505.1
KEGG koko:K02929
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG1631@1,KOG3464@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons3
Model size345
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10220.260.1prot_D-dudresnayi_contig10220.260.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10220 4543..5052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927522.9701087-CDS-D-dudresnayi_contig10220:4542..46711622927522.9701087-CDS-D-dudresnayi_contig10220:4542..4671Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10220 4543..4671 -
1690556791.0958824-CDS-D-dudresnayi_contig10220:4542..46711690556791.0958824-CDS-D-dudresnayi_contig10220:4542..4671Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10220 4543..4671 -
1622927522.9867973-CDS-D-dudresnayi_contig10220:4749..48181622927522.9867973-CDS-D-dudresnayi_contig10220:4749..4818Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10220 4750..4818 -
1690556791.1077576-CDS-D-dudresnayi_contig10220:4749..48181690556791.1077576-CDS-D-dudresnayi_contig10220:4749..4818Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10220 4750..4818 -
1622927523.0028517-CDS-D-dudresnayi_contig10220:4938..50521622927523.0028517-CDS-D-dudresnayi_contig10220:4938..5052Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10220 4939..5052 -
1690556791.1165624-CDS-D-dudresnayi_contig10220:4938..50521690556791.1165624-CDS-D-dudresnayi_contig10220:4938..5052Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10220 4939..5052 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.0153966-UTR-D-dudresnayi_contig10220:5052..50851622927523.0153966-UTR-D-dudresnayi_contig10220:5052..5085Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10220 5053..5085 -
1690556791.126801-UTR-D-dudresnayi_contig10220:5052..50851690556791.126801-UTR-D-dudresnayi_contig10220:5052..5085Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10220 5053..5085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10220.260.1

>prot_D-dudresnayi_contig10220.260.1 ID=prot_D-dudresnayi_contig10220.260.1|Name=mRNA_D-dudresnayi_contig10220.260.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=104bp
MVNVPKERKTFCKGKKCTKHTLHKVTQYKAGKASNFAQGKRRYDSKQKGF
GGQTKPVFHKKAKTTKKITLRLECKECKTKKQLCIKRTKHFELGEKKKTT
GGY*
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mRNA from alignment at D-dudresnayi_contig10220:4543..5085-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10220.260.1 ID=mRNA_D-dudresnayi_contig10220.260.1|Name=mRNA_D-dudresnayi_contig10220.260.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at D-dudresnayi_contig10220:4543..5085- (Desmarestia dudresnayi DdudBR16 monoicous)
GTTAAATTCTCTTTGCAAGTCCGTATCTAAAAAATGGTGAACGTACCCAA
GGAAAGAAAGACCTTCTGCAAAGGAAAGAAGTGCACCAAGCACACCCTTC
ACAAGGTGACCCAGTACAAGGCCGGCAAGGCTTCTAACTTCGCTCAGGTA
CAACTCAAATTTCCTCAATGTTATCTTCGCAACGTTGATCAACGTTTAAT
AATAGAATTTGCTTCAAAATAAGAAGTTTCTTATCATTTTATTATTATTG
TTTGATTGGCTTAATAGGGTAAGAGAAGATACGACTCCAAGCAGAAGGGT
TTTGGTGGTCAGACTAAGCCTGTCTTCCACAAGAAGGTGCGTATTATTCC
GTGCATTATTAGTTATACTAATATTATTTTATTTCATTAATCCATAATAT
TATTCATTGTATAGGCCAAAACTACCAAGAAGATCACTTTACGTCTGGAG
TGCAAGGAATGCAAGACCAAGAAGCAACTTTGCATCAAGCGAACCAAGCA
CTTCGAGTTAGGCGAGAAGAAGAAGACAACCGGTGGATACTAA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10220:4543..5085-

>mRNA_D-dudresnayi_contig10220.260.1 ID=mRNA_D-dudresnayi_contig10220.260.1|Name=mRNA_D-dudresnayi_contig10220.260.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at D-dudresnayi_contig10220:4543..5085- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGAACGTACCCAAGGAAAGAAAGACCTTCTGCAAAGGAAAGAAGTG
CACCAAGCACACCCTTCACAAGGTGACCCAGTACAAGGCCGGCAAGGCTT
CTAACTTCGCTCAGATGGTGAACGTACCCAAGGAAAGAAAGACCTTCTGC
AAAGGAAAGAAGTGCACCAAGCACACCCTTCACAAGGTGACCCAGTACAA
GGCCGGCAAGGCTTCTAACTTCGCTCAGGGTAAGAGAAGATACGACTCCA
AGCAGAAGGGTTTTGGTGGTCAGACTAAGCCTGTCTTCCACAAGAAGGGT
AAGAGAAGATACGACTCCAAGCAGAAGGGTTTTGGTGGTCAGACTAAGCC
TGTCTTCCACAAGAAGGCCAAAACTACCAAGAAGATCACTTTACGTCTGG
AGTGCAAGGAATGCAAGACCAAGAAGCAACTTTGCATCAAGCGAACCAAG
CACTTCGAGTTAGGCGAGAAGAAGAAGACAACCGGTGGATACTAAGCCAA
AACTACCAAGAAGATCACTTTACGTCTGGAGTGCAAGGAATGCAAGACCA
AGAAGCAACTTTGCATCAAGCGAACCAAGCACTTCGAGTTAGGCGAGAAG
AAGAAGACAACCGGTGGATACTAA
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