mRNA_D-dudresnayi_contig1022.254.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1022.254.1
Unique NamemRNA_D-dudresnayi_contig1022.254.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig1022.254.1 vs. uniprot
Match: A0A482SUL1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUL1_9ARCH)

HSP 1 Score: 130 bits (328), Expect = 4.790e-37
Identity = 59/83 (71.08%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    1 RTTVCWTLSYIISIWIRHYSHRLLVFGEYEGTYCSSLSRTYLTYSSSIIISMFSNHFIVNYLLLSHRTAWVVTMLWTGIFNYF 249
            + TVCWTLSYI+SI +RH SHR +VFGEYEGTYCSSL RTYL YSSSI+ISM +NH +VN + L H+ AW++TMLWTG+FNYF
Sbjct:   51 KVTVCWTLSYILSICVRHTSHRFIVFGEYEGTYCSSLMRTYLAYSSSILISMVTNHLLVNMVQLGHKEAWLLTMLWTGLFNYF 133          
BLAST of mRNA_D-dudresnayi_contig1022.254.1 vs. uniprot
Match: A0A7S1D7H2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7H2_CYCTE)

HSP 1 Score: 89.0 bits (219), Expect = 1.140e-20
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    7 TVCWTLSYIISIWIRHYSHRLLVFGEYEGTYCSSLSRTYLTYSSSIIISMFSNHFIVNYLLLSHRTAWVVTMLWTGIFNYF 249
            +VCWT+S+ +SI  RH +HR LVFG Y G YC+SL R Y  YS SI++S   N F      +SH  AW +T+LWTG+ NYF
Sbjct:   41 SVCWTISFTLSIIFRHTTHRYLVFGNYVGGYCNSLLRMYGGYSVSIVLSAAFNMFATKLASISHYIAWFITLLWTGVVNYF 121          
BLAST of mRNA_D-dudresnayi_contig1022.254.1 vs. uniprot
Match: A0A7S3PXD5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXD5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.150e-20
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    4 TTVCWTLSYIISIWIRHYSHRLLVFGEYEGTYCSSLSRTYLTYSSSIIISMFSNHFIVNYLLLSHRTAWVVTMLWTGIFNYF 249
            ++ CW L + ISI +RH SHR LVFG+Y G Y  SL R Y  YS  I+IS   N F+   L+LSH TAW+ T+LWTGI NYF
Sbjct:  154 SSTCWALGFGISIVVRHSSHRYLVFGDYVGGYWKSLMRMYTGYSIIIVISTLFNIFMTKVLMLSHYTAWIATLLWTGIVNYF 235          
BLAST of mRNA_D-dudresnayi_contig1022.254.1 vs. uniprot
Match: A0A7S2K0J3_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K0J3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 6.250e-19
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    7 TVCWTLSYIISIWIRHYSHRLLVFGEYEGTYCSSLSRTYLTYSSSIIISMFSNHFIVNYLLLSHRTAWVVTMLWTGIFNYF 249
            ++CW +S+ +SI  RH SHR LVFG Y+G Y  SL R Y  YS  I++S   N ++   LL+ H  AWV+T+LWTG+ NYF
Sbjct:   62 SICWAVSFSLSITARHSSHRWLVFGAYQGGYWHSLMRMYAGYSIIIVLSTLFNLYMTKVLLVPHYVAWVLTLLWTGVVNYF 142          
BLAST of mRNA_D-dudresnayi_contig1022.254.1 vs. uniprot
Match: A0A7S2MJZ9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MJZ9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.150e-18
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    7 TVCWTLSYIISIWIRHYSHRLLVFGEYEGTYCSSLSRTYLTYSSSIIISMFSNHFIVNYLLLSHRTAWVVTMLWTGIFNYF 249
            ++CW L + +SI +RH SHR LVFG Y G Y  SL R YL YS  I++S   N  +   L +SH  AWV+T+LWTG+ NYF
Sbjct:  107 SICWALGFGLSIVVRHTSHRYLVFGRYVGGYWRSLGRMYLGYSIIIVLSTIFNLIMTKILSVSHYLAWVITLLWTGLVNYF 187          
BLAST of mRNA_D-dudresnayi_contig1022.254.1 vs. uniprot
Match: A0A1E7FKH3_9STRA (GtrA domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKH3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.860e-18
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    7 TVCWTLSYIISIWIRHYSHRLLVFGEYEGTYCSSLSRTYLTYSSSIIISMFSNHFIVNYLLLSHRTAWVVTMLWTGIFNYF 249
            ++CW +S+  SI  RH SHR LVFG+Y G+Y +SL + YL YS  IIIS   N  +  Y+ + H  AWV+T+LWTGI NYF
Sbjct:  128 SLCWMISFFGSIVFRHTSHRYLVFGDYIGSYWNSLIKMYLGYSIIIIISTVFNFIMTKYVKVPHLIAWVITLLWTGIVNYF 208          
BLAST of mRNA_D-dudresnayi_contig1022.254.1 vs. uniprot
Match: A0A7S2ULV9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULV9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.510e-18
Identity = 42/81 (51.85%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    7 TVCWTLSYIISIWIRHYSHRLLVFGEYEGTYCSSLSRTYLTYSSSIIISMFSNHFIVNYLLLSHRTAWVVTMLWTGIFNYF 249
            +VCW LS+ +SI  RH SHR  VFG Y G Y +SL R Y  YS  I+IS   N  +    L+ H  AWV+T+LWTGI NYF
Sbjct:  172 SVCWALSFSLSISARHSSHRYFVFGSYVGGYWNSLGRMYAGYSIIIVISTIFNIIMTKVALIDHYVAWVITLLWTGIVNYF 252          
BLAST of mRNA_D-dudresnayi_contig1022.254.1 vs. uniprot
Match: A0A835YNF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNF2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.310e-17
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    1 RTTVCWTLSYIISIWIRHYSHRLLVFGEY-EGTYCSSLSRTYLTYSSSIIISMFSNHFIVNYLLLSHRTAWVVTMLWTGIFNYF 249
            + TV W +SY+IS+W++H  H LLVFG   EG Y +SL+ TY TYS SI +S   N  ++NY+ LSH  AW  T+  TG+ NYF
Sbjct:   46 KATVSWAVSYLISVWLQHSLHTLLVFGRSSEGGYWTSLAVTYATYSVSIALSPVVNAALINYVGLSHSLAWFGTLASTGVLNYF 129          
BLAST of mRNA_D-dudresnayi_contig1022.254.1 vs. uniprot
Match: B7G629_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G629_PHATC)

HSP 1 Score: 83.2 bits (204), Expect = 1.660e-17
Identity = 42/81 (51.85%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    7 TVCWTLSYIISIWIRHYSHRLLVFGEYEGTYCSSLSRTYLTYSSSIIISMFSNHFIVNYLLLSHRTAWVVTMLWTGIFNYF 249
            ++CW LS+ ISI  RH SHR LVFG+Y G Y +SL R Y  YS  I++S   N  +     +SH  AWV T+LWTGI NYF
Sbjct:  158 SLCWALSFFISIVFRHTSHRYLVFGDYIGGYWASLIRMYAGYSIIIVLSTIFNALVTKVWHISHGIAWVSTLLWTGIANYF 238          
BLAST of mRNA_D-dudresnayi_contig1022.254.1 vs. uniprot
Match: A0A1Z5JHS5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHS5_FISSO)

HSP 1 Score: 80.9 bits (198), Expect = 2.210e-16
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    7 TVCWTLSYIISIWIRHYSHRLLVFGEYEGTYCSSLSRTYLTYSSSIIISMFSNHFIVNYLLLSHRTAWVVTMLWTGIFNYF 249
            T+CWT+S+I+S+  RH SHR +VFG+Y G Y  SL R Y  YS  I++S   N  +     LSH  AW +T+ W+GI NYF
Sbjct:  208 TICWTVSFIMSVVFRHTSHRYMVFGDYVGGYWVSLLRMYAGYSFIIVLSTLVNLCLTRLTELSHYLAWFITIFWSGIANYF 288          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1022.254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A482SUL1_9ARCH4.790e-3771.08Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1D7H2_CYCTE1.140e-2051.85Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3PXD5_9STRA1.150e-2054.88Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2K0J3_9STRA6.250e-1949.38Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S2MJZ9_9STRA1.150e-1850.62Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1E7FKH3_9STRA1.860e-1851.85GtrA domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S2ULV9_9STRA4.510e-1851.85Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A835YNF2_9STRA1.310e-1750.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B7G629_PHATC1.660e-1751.85Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5JHS5_FISSO2.210e-1648.15Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1022contigD-dudresnayi_contig1022:11093..11341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue4.2e-10
Seed eggNOG ortholog5762.XP_002669633.1
EggNOG free text desc.GtrA-like protein
EggNOG OGs2E6Y9@1,2SDKF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.7989535-CDS-D-dudresnayi_contig1022:11092..113411622927520.7989535-CDS-D-dudresnayi_contig1022:11092..11341Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1022 11093..11341 -
1690556790.865314-CDS-D-dudresnayi_contig1022:11092..113411690556790.865314-CDS-D-dudresnayi_contig1022:11092..11341Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1022 11093..11341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1022.254.1prot_D-dudresnayi_contig1022.254.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1022 11093..11341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1022.254.1

>prot_D-dudresnayi_contig1022.254.1 ID=prot_D-dudresnayi_contig1022.254.1|Name=mRNA_D-dudresnayi_contig1022.254.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=83bp
RTTVCWTLSYIISIWIRHYSHRLLVFGEYEGTYCSSLSRTYLTYSSSIII
SMFSNHFIVNYLLLSHRTAWVVTMLWTGIFNYF
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mRNA from alignment at D-dudresnayi_contig1022:11093..11341-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1022.254.1 ID=mRNA_D-dudresnayi_contig1022.254.1|Name=mRNA_D-dudresnayi_contig1022.254.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at D-dudresnayi_contig1022:11093..11341- (Desmarestia dudresnayi DdudBR16 monoicous)
AGAACAACAGTATGTTGGACTTTGAGTTATATCATAAGTATTTGGATAAG ACATTATTCACATAGATTATTAGTTTTTGGTGAATATGAAGGAACATATT GTTCTTCATTATCAAGAACATATTTAACTTACTCTAGTAGTATTATAATA TCAATGTTTAGTAATCATTTCATAGTCAATTATTTATTATTATCGCATCG TACAGCATGGGTGGTTACAATGTTATGGACTGGTATATTTAATTATTTT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1022:11093..11341-

>mRNA_D-dudresnayi_contig1022.254.1 ID=mRNA_D-dudresnayi_contig1022.254.1|Name=mRNA_D-dudresnayi_contig1022.254.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at D-dudresnayi_contig1022:11093..11341- (Desmarestia dudresnayi DdudBR16 monoicous)
AGAACAACAGTATGTTGGACTTTGAGTTATATCATAAGTATTTGGATAAG
ACATTATTCACATAGATTATTAGTTTTTGGTGAATATGAAGGAACATATT
GTTCTTCATTATCAAGAACATATTTAACTTACTCTAGTAGTATTATAATA
TCAATGTTTAGTAATCATTTCATAGTCAATTATTTATTATTATCGCATCG
TACAGCATGGGTGGTTACAATGTTATGGACTGGTATATTTAATTATTTTA
GAACAACAGTATGTTGGACTTTGAGTTATATCATAAGTATTTGGATAAGA
CATTATTCACATAGATTATTAGTTTTTGGTGAATATGAAGGAACATATTG
TTCTTCATTATCAAGAACATATTTAACTTACTCTAGTAGTATTATAATAT
CAATGTTTAGTAATCATTTCATAGTCAATTATTTATTATTATCGCATCGT
ACAGCATGGGTGGTTACAATGTTATGGACTGGTATATTTAATTATTTT
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