mRNA_D-dudresnayi_contig10217.251.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10217.251.1
Unique NamemRNA_D-dudresnayi_contig10217.251.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10217.251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10217contigD-dudresnayi_contig10217:343..924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size584
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.2693832-UTR-D-dudresnayi_contig10217:342..6241622927520.2693832-UTR-D-dudresnayi_contig10217:342..624Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10217 343..624 +
1690556790.798411-UTR-D-dudresnayi_contig10217:342..6241690556790.798411-UTR-D-dudresnayi_contig10217:342..624Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10217 343..624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.2804277-CDS-D-dudresnayi_contig10217:624..9241622927520.2804277-CDS-D-dudresnayi_contig10217:624..924Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10217 625..924 +
1690556790.8063943-CDS-D-dudresnayi_contig10217:624..9241690556790.8063943-CDS-D-dudresnayi_contig10217:624..924Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10217 625..924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10217.251.1prot_D-dudresnayi_contig10217.251.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10217 625..924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10217.251.1

>prot_D-dudresnayi_contig10217.251.1 ID=prot_D-dudresnayi_contig10217.251.1|Name=mRNA_D-dudresnayi_contig10217.251.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=100bp
MHQSYEYCLSENASEYMEKVRTRGLAYDAHACLYKTIPYMKPLTNQKFVA
GKHILHRVVDAMAILESKRCGRDRVFHTYHGARKAGSIAPSCNNCSRIVP
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mRNA from alignment at D-dudresnayi_contig10217:343..924+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10217.251.1 ID=mRNA_D-dudresnayi_contig10217.251.1|Name=mRNA_D-dudresnayi_contig10217.251.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=582bp|location=Sequence derived from alignment at D-dudresnayi_contig10217:343..924+ (Desmarestia dudresnayi DdudBR16 monoicous)
GGAAGGAGTAGGGTAGATGGGGGGCGCGCGAAGAGCAGTTTAAAAAACGA
GCACGGACGTCGGCGGCCTCCCACTCGCGTGGCCATGCTATTCAGTACCT
ATACAGTATGTTTCTGCATGACGCGTACAAATAATAAAAACCTTATCCAG
TCGCGTATTTGACGTCGTTGCGCAAGGTTGTTTTGGCATCTCCTATTATC
TACTACGAAGTATACATATTCCCGGCATGCATACCGCATACACGGCAAAT
CTTAAATGTTATTCGATATGGGTTGATTATATATGCACCAGAGCTACGAA
TACTGCTTGTCGGAGAACGCTTCGGAGTACATGGAAAAGGTACGTACCCG
AGGACTCGCCTACGATGCGCACGCGTGTTTATACAAAACTATTCCATACA
TGAAACCGCTCACAAATCAAAAGTTTGTTGCGGGAAAACATATTTTGCAT
CGCGTTGTTGATGCAATGGCGATTTTGGAAAGCAAGAGATGCGGCAGAGA
CCGTGTATTTCACACTTACCACGGCGCTCGAAAAGCTGGCAGCATTGCTC
CTTCGTGCAATAATTGTTCTCGCATAGTTCCT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10217:343..924+

>mRNA_D-dudresnayi_contig10217.251.1 ID=mRNA_D-dudresnayi_contig10217.251.1|Name=mRNA_D-dudresnayi_contig10217.251.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at D-dudresnayi_contig10217:343..924+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCACCAGAGCTACGAATACTGCTTGTCGGAGAACGCTTCGGAGTACAT
GGAAAAGGTACGTACCCGAGGACTCGCCTACGATGCGCACGCGTGTTTAT
ACAAAACTATTCCATACATGAAACCGCTCACAAATCAAAAGTTTGTTGCG
GGAAAACATATTTTGCATCGCGTTGTTGATGCAATGGCGATTTTGGAAAG
CAAGAGATGCGGCAGAGACCGTGTATTTCACACTTACCACGGCGCTCGAA
AAGCTGGCAGCATTGCTCCTTCGTGCAATAATTGTTCTCGCATAGTTCCT
ATGCACCAGAGCTACGAATACTGCTTGTCGGAGAACGCTTCGGAGTACAT
GGAAAAGGTACGTACCCGAGGACTCGCCTACGATGCGCACGCGTGTTTAT
ACAAAACTATTCCATACATGAAACCGCTCACAAATCAAAAGTTTGTTGCG
GGAAAACATATTTTGCATCGCGTTGTTGATGCAATGGCGATTTTGGAAAG
CAAGAGATGCGGCAGAGACCGTGTATTTCACACTTACCACGGCGCTCGAA
AAGCTGGCAGCATTGCTCCTTCGTGCAATAATTGTTCTCGCATAGTTCCT
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