mRNA_D-dudresnayi_contig1020.238.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1020.238.1
Unique NamemRNA_D-dudresnayi_contig1020.238.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1020.238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1020contigD-dudresnayi_contig1020:1137..2958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size475
Cds size111
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1020.238.1prot_D-dudresnayi_contig1020.238.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1020 1137..2307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.0196793-CDS-D-dudresnayi_contig1020:1136..11751622927519.0196793-CDS-D-dudresnayi_contig1020:1136..1175Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1020 1137..1175 -
1690556790.0904996-CDS-D-dudresnayi_contig1020:1136..11751690556790.0904996-CDS-D-dudresnayi_contig1020:1136..1175Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1020 1137..1175 -
1622927519.032222-CDS-D-dudresnayi_contig1020:2235..23071622927519.032222-CDS-D-dudresnayi_contig1020:2235..2307Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1020 2236..2307 -
1690556790.0978174-CDS-D-dudresnayi_contig1020:2235..23071690556790.0978174-CDS-D-dudresnayi_contig1020:2235..2307Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1020 2236..2307 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927519.04744-UTR-D-dudresnayi_contig1020:2307..25481622927519.04744-UTR-D-dudresnayi_contig1020:2307..2548Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1020 2308..2548 -
1690556790.1052535-UTR-D-dudresnayi_contig1020:2307..25481690556790.1052535-UTR-D-dudresnayi_contig1020:2307..2548Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1020 2308..2548 -
1622927519.065293-UTR-D-dudresnayi_contig1020:2837..29581622927519.065293-UTR-D-dudresnayi_contig1020:2837..2958Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1020 2838..2958 -
1690556790.1147466-UTR-D-dudresnayi_contig1020:2837..29581690556790.1147466-UTR-D-dudresnayi_contig1020:2837..2958Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1020 2838..2958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1020.238.1

>prot_D-dudresnayi_contig1020.238.1 ID=prot_D-dudresnayi_contig1020.238.1|Name=mRNA_D-dudresnayi_contig1020.238.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=37bp
MEPADSSGAGSGEEGAFGFPTRRQGSAKPPHRRAASS
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mRNA from alignment at D-dudresnayi_contig1020:1137..2958-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1020.238.1 ID=mRNA_D-dudresnayi_contig1020.238.1|Name=mRNA_D-dudresnayi_contig1020.238.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1822bp|location=Sequence derived from alignment at D-dudresnayi_contig1020:1137..2958- (Desmarestia dudresnayi DdudBR16 monoicous)
GTCCCTTTTTCGTATTTTTGTTTTGCCTTGGTGTGCAGCGCGTAAAGCTC
TGTATTTGGCATCAGCATCAATCGGCGGCTCGCAGCGGCACGAGCCTTAG
CTTCAGCCACACGTAATCAAGGTATGCTGTTTCGTGTGTCTTTCTAGGGG
GACCAGGGGGCGCTGTTTTTGGAACAGTCTCGGATTAGGCAGCAGCTCAT
CAATCACTCCGTCATAATGTCATATTAGTCTCGTGCTTCGGAGCTAGAAA
ATATGTCAGCGATTCCGCAGTCCACACCAGACCCCAGAGTTTCTCAGGTC
AGGGGCTCACTCAAGGAGTTTTTCAATCTCAAAAGAACCTCGCGCAATGT
GCCAAGTGCTCACCGTCATCTGGTGTGCGTCAAACGTTCTGGTGTTGTTT
GTTTTGGCAGGGTTAAACAAACGGAGAAGGGGGGTAGAGGCCCCTCCGAC
AAGCTAGGACTCTGTGGTGCGGTTCATCCATCCTTTGATATTTCCAAGGC
CTTCTCTCAAAACCCTACACGACACAACCTTTCCTAAAAGCCTTCCCAAA
ACCCTGTTACATTAGTTATCGACCCCGGTTGGGCTCGAGACCCTCACACT
CGACCCAGCGACGGCCTCTCGCGTGCGCTCGGGGCCGGCTGGGCTTAGAA
GATGGAGCCAGCGGATTCTTCAGGCGCGGGCAGCGGAGAGGAAGGGGCGT
TCGGCTTCCCTACCCGGAGACAGGTATGAGACACCTAAAACCTAGTCGCG
GAAAAGGACGGGGTGGTACGCTGGCCACGCGTTGCTATGTGCAGGTCGAG
GCAGTCTAGTGGTACTGTAGTAGTATAGGTAGTATTACGTTCATGGGACA
GTAGTGTATGTGCGCTCTGTCAATGCACGCTGGCTTTGTTTGACGGGGGC
GTGTCTGTTCTTATGTTCGCTTGATGTTCCGGGACTGCCTAGGACACTCC
TGCGGGAGGCTGTACAGCAGTATAGTTACGGTATAATGGGTGCATAGAGC
TCTATTTCTCTTTTTAGAGGTACGGTATGGCAACAAAGACAAGCGTGTCA
CTAAATCACCAAGCTCGCTAGTCCCGACCTGTTTATGGCAGTATGCAGCT
ATACTTTAGGAGAAAAAAATGCACCAGCATGCTCGTAGTGTGGCGGTGTG
TTTTTCGCTGGTGTAAGTGGCATCGCCAACGGTCCTTACCGAGCTGCTGG
TGCTGGCAATCGTGGTGTTGCACTCCTTGGGGTCGGCCCTTTTTTTTGTA
TTTTTTCCTTTTTGCCACATCTGACATGGTACGCCCCCGCTTCCTGCTCC
CTATTTTGGCGTAGCCTCTGGTATCATCGCTGAAGAGTTCCATTGCGAAA
GTATCTTGCGATGACGAATGTGGCAAACTGTTCGTAGTCCGTTGACGCCG
TGGGTGGTCGCTAGCCTGAGTTGTTTGTTTGGCCGGGGTGGCGGGGGGGG
GGGGGGGGGGGGGGTTATGTTTTTCTTCACCCGCCGGCTGCTATTAAACA
CAAACAAAAAAANNNNNNNNNNGTTGAGCGGGGGGGGAGGGGTGGCGGGG
GGGTTTGGGGGCGGGGGGGGGGGGGGGGGTGGCGGGGGTGTGTTGTGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGTAGGATC
TTGGCCAACGCTGACGGGCATTTTGCACACAACAACAGACAGTAGATTAC
TCCGTCGCTTTCGGCTCTGTTTTGTTCGAGATGTATGATACGAGTACGAA
CTCCATCGTGCTGTCTTGTTTGCTTTTTGTCAGGGCTCAGCCAAGCCACC
ACACAGACGTGCGGCGTCGTCC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1020:1137..2958-

>mRNA_D-dudresnayi_contig1020.238.1 ID=mRNA_D-dudresnayi_contig1020.238.1|Name=mRNA_D-dudresnayi_contig1020.238.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at D-dudresnayi_contig1020:1137..2958- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGAGCCAGCGGATTCTTCAGGCGCGGGCAGCGGAGAGGAAGGGGCGTT
CGGCTTCCCTACCCGGAGACAGATGGAGCCAGCGGATTCTTCAGGCGCGG
GCAGCGGAGAGGAAGGGGCGTTCGGCTTCCCTACCCGGAGACAGGGCTCA
GCCAAGCCACCACACAGACGTGCGGCGTCGTCCGGCTCAGCCAAGCCACC
ACACAGACGTGCGGCGTCGTCC
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