mRNA_D-dudresnayi_contig10152.206.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10152.206.1
Unique NamemRNA_D-dudresnayi_contig10152.206.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10152.206.1 vs. uniprot
Match: D7FP45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP45_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 2.660e-40
Identity = 93/209 (44.50%), Postives = 119/209 (56.94%), Query Frame = 1 
Query:    7 QFRTEADDQPLRLTVRQDVKSRAGLKILGRSIMVFDFEPAGTVTSNNSPTGASANHGREEAPAYDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSGAGXVXXXXXAG----ASDCVVFVHDRYNGSKQLYVNQALVYSVEKECTDGMMNSWVIPLSFGRVALRLTNKLLSKSGFQYTLTRED-------------GTVLFKT 582
            +FR+ AD+  L+LTVRQDV  +AG K LGRS++VFDF+PAG +TS NSP          +APA++                                  AG G G        G    +S CVVFVH+RYNG+KQLYVN+AL YSV+KECTDG +NSWVIPL FGR  LRLT+KL + SGF+Y +T ++             GTVL+K+
Sbjct:   22 EFRSNADE-ALKLTVRQDVTRKAGFKKLGRSVLVFDFQPAGAITSTNSPNNVM------DAPAHESSTVMAEGALRAAAVDTAGRAGGDWSAR------AGPGEGEEGSGESTGVTSASSVCVVFVHNRYNGAKQLYVNRALAYSVKKECTDGNLNSWVIPLPFGRAVLRLTSKLFASSGFEYVMTLDNHDRGGGXXXXXXRGTVLYKS 217
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10152.206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP45_ECTSI2.660e-4044.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10152contigD-dudresnayi_contig10152:2536..6879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_002440.1
Exons2
Model size1649
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10152.206.1prot_D-dudresnayi_contig10152.206.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10152 3597..6777 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.8683584-UTR-D-dudresnayi_contig10152:2535..35961622927515.8683584-UTR-D-dudresnayi_contig10152:2535..3596Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10152 2536..3596 -
1690556788.0979831-UTR-D-dudresnayi_contig10152:2535..35961690556788.0979831-UTR-D-dudresnayi_contig10152:2535..3596Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10152 2536..3596 -
1622927515.9041545-UTR-D-dudresnayi_contig10152:6777..68791622927515.9041545-UTR-D-dudresnayi_contig10152:6777..6879Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10152 6778..6879 -
1690556788.1275764-UTR-D-dudresnayi_contig10152:6777..68791690556788.1275764-UTR-D-dudresnayi_contig10152:6777..6879Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10152 6778..6879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.880813-CDS-D-dudresnayi_contig10152:3596..38031622927515.880813-CDS-D-dudresnayi_contig10152:3596..3803Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10152 3597..3803 -
1690556788.1068742-CDS-D-dudresnayi_contig10152:3596..38031690556788.1068742-CDS-D-dudresnayi_contig10152:3596..3803Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10152 3597..3803 -
1622927515.8906703-CDS-D-dudresnayi_contig10152:6498..67771622927515.8906703-CDS-D-dudresnayi_contig10152:6498..6777Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10152 6499..6777 -
1690556788.1157477-CDS-D-dudresnayi_contig10152:6498..67771690556788.1157477-CDS-D-dudresnayi_contig10152:6498..6777Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10152 6499..6777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10152.206.1

>prot_D-dudresnayi_contig10152.206.1 ID=prot_D-dudresnayi_contig10152.206.1|Name=mRNA_D-dudresnayi_contig10152.206.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=162bp
MVFDFEPAGTVTSNNSPTGASANHGREEAPAYDDGSTTTSAVEAAAAPAG
GGVIAAEAAAAAATGGGAGSGAGGVGGEGGAGASDCVVFVHDRYNGSKQL
YVNQALVYSVEKECTDGMMNSWVIPLSFGRVALRLTNKLLSKSGFQYTLT
REDGTVLFKTK*
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mRNA from alignment at D-dudresnayi_contig10152:2536..6879-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10152.206.1 ID=mRNA_D-dudresnayi_contig10152.206.1|Name=mRNA_D-dudresnayi_contig10152.206.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=4344bp|location=Sequence derived from alignment at D-dudresnayi_contig10152:2536..6879- (Desmarestia dudresnayi DdudBR16 monoicous)
CAGGTCCAGTTCCGAACGGAAGCCGACGACCAACCGTTAAGGCTCACCGT
GCGGCAGGATGTCAAGAGCAGGGCCGGCTTGAAAATCCTCGGCCGCTCGA
TTATGGTGTTCGATTTTGAGCCTGCCGGCACGGTGACGTCAAACAACAGT
CCTACGGGCGCCTCCGCGAATCATGGGCGGGAGGAGGCGCCAGCGTATGA
CGACGGAAGCACTACTACTTCGGCGGTGGAGGCGGCGGCTGCGCCAGCTG
GAGGAGGGGTGATAGCAGCAGAAGCAGCAGCAGCAGCCGCAACAGGAGGA
GGAGCAGGAAGTGGGGCCGGGGGGGTAGGTGGGGAGGGCGGTGCTGGGGC
GTCAGATTGCGTGGTTTTTGTCCACGACAGGGTGAGCTTCGATGTCACTG
TTGTTGGTTGTTGGATACTTTAGGAGGGCGTTTACAAAATTGCATACACT
AATCTTTGATCTTTGCGTTTACAATCTCAAACCCGGTGCACACGTAAAAA
TAAATAAAAAAAACATGCTTTTAAAAAAAATGATGCTGTAACATTAAAAA
AATGCATGCAACCCAAAATTTGAGGTCATTTGTCATTTACGTTTCTTTAC
ATTTTCATCTATTTCGTTTTTCTTTGTTTTTTCGCTCTCTGTTTTTCGAT
TTGTATGTTTCTTGCCTTGTGTGTGTTTTTGCGAATTGGTGATAATTAAG
CTATACATACAGTTGGCTTGTGACCACGGAAAGTTCAAGGGCTGTGTATC
GATGCCTCGCGCCGATATTATATATACCGGCAAATCGGCGCAGCCGATAG
ATCGATACAGTATATGTACGATACATCGTACATATATCGGCGAGCGAAAC
GAGCCGGTGCCCCCGCGCCCCCCCGGCTGGTGAGGGGCCCCGCTGGAGGC
GCCGGCGGAGACAAGAAACATTTCGGCATTTGGCTTCATTTCTCTTCATT
ATCAGGCCACAAATGACTACCGGAAAGGGGTGTCGCTGGAGTATGAATCG
GTACAAATTTCGATTACAGATAAGTTAGCAAAGCGGCGATAAAAAATTGA
CACAATGCTTATCCTGTTTTTGAAGCCACCACAAAACAGTTTGACTGATT
TGATTGGTAGTCCCACATTTAACTTAATATTGTAAGGATTCGGCTCGAAT
CCCGCCGTTGTCACAACCATGATAGAGCCCGGGAAAATAGGGCACCACAA
CAACAAGCAGAAAAAACGCTCCAGAGCACCGTTGTAAAGGATCTAAAACG
ACCAAACCCGTCGTTTGCTACGCCTCACACGGCCCTGTACAAGCAAACGC
AAGAACCCAACCTCCCCCTAGACTATAGTGACGCTGGTACATACCACCAA
GCAATAAATACCAGCATAAGAAAAAAAAAGCTTGCAAACAAAAAACACCT
CATAGCAAAGTATACACCCCTTGACGAGGGATTCTGTGCAAGTACGTTGT
TAACATCTATACCGGTACTGTACCTACAGCAGTAATCTACAAGCTGTGAG
AGAAGCTATCCCGCAATCGCTAGTTGGCGGCAGATTGCTTTGGTGTTGGT
TAACAGCGACCCCTGGACATCCTGGCAGGGCTGGAACTGACATTATAGCC
CTGTGGGAAAAAAGGCCGATATATCGGTAAAGCTGTCCATCGATAGATAC
GCTACTTCGAAGTATATCGTATCGGACGATACATCGTTGTGTATTGGCAT
CGATACACAGCCCTAGGAATTTCGTATCTCTCTACGAGAAAACAGAAGAA
TCAGAACACACTCTGAGTATGCTACTGGATGTCATAGGGTAGAAACTGCG
ACTTTTAATGCTGAGACAACAACAACAACATCAACAACATCAACATCGTT
GAATCGTATCGTCGCCCAGGCGACAGACCGGCCGTCAGGCGATTCTTTCT
CCGAAACGTTTTTATCGATCTATATCATAGGGATAGCTCGACAACGCGAG
CAAGCACTATTCGATGAAAGAACGTCGACGAGCCATGGGAGTGCCGAACC
CTGTGTGCGCGATAAAAACAATGGTTGGCATGTACCGGGGGGGAGAGGGG
AAGACACCGGTGACCACTGACTTAGACACGCGCGCTGAGTGGCGAGTGGA
AGAGCTTCGATGAGCTATCATATTTCCTCTGTCCCATAAGTCTGGTCGGT
TATGTTTGTACGACTTATGGGACAGAGGAAGTATGGACTGGGAAGCTCAA
AGCTATGGATAAAACAAAATTGCATCTTCAACCCTACTCGATGTTTTACC
AGAACACACCCGCCGGTCGCTTGCTTCAATGTAGCCTGCTGTCCGTTCGC
CGGCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCAT
CCATCTGTTTTGACTGAATATATGCGACCTTCTTGTTTGCGTGCTACGTT
ACTTTGCTTTTTGTTGACCTGTCCTTCGTTGATTCGTTTATTCATTCGTT
GATTCGTTCATTCATTCGTTCATTCGTTCGTTCGTTCGTTCGTTCATTCG
TTCGTCATTATTTGTCACGGTTGGACTCATCTCTCGCGTTACTGAGCGAG
GCGTTGCCCACGTTATTCCGTACAAATACCGCCCGTTGCGGCCAGTGCTG
ACAACCCTTGGACGGGGCTAGGTGGTGCCGTATAGTACGGCACCGAGAGC
GCGCTTCGTCGTACTGTACCGTAGCATCTACGGTTGTTCCTTTCCTGTCT
GGTGTTGTCAGCCAGCGTGTACATCGCAGAGCGGTTTTTTGTCCAGCAGT
CGTGTGTTTGTCTGTTAGTTCCTGGCGTGTACTTTCTGTGCCGCGTTGTA
TTTGGTTATTGAAAGAGTCGTGTGTGTGTGTGTGTGTGTTTTGCGATTTT
TGCCGGTAGTATATATACTACATACTCTAGGGAATGAAATGCTAAAAATG
CCAGCATCCCATCTCTCTCTCTCTCGCGCGCGCTTGGCATATTTTTCGTT
GTTTCCTTTCGTCGCGACAACAACAATGGTTGCCAACAACTACAATGGTT
GCAACATTGGCAATGGTTGACAACATCAAACAATGGTTGACAACATCAAA
CAATGGTTGACAAAAACAAACAACAGTACAACGGGTCGAAACAGCTCTAC
GTCAACCAGGCGCTCGTCTACAGCGTGGAAAAGGAGTGCACCGACGGGAT
GATGAACTCCTGGGTCATCCCGCTCTCCTTCGGGCGCGTCGCGTTGAGGC
TGACCAACAAGCTCCTCAGCAAGAGCGGCTTTCAGTACACCCTCACGCGC
GAGGACGGCACGGTTCTGTTCAAGACCAAGTAGAATCCTACAGTATAGTA
AGATACAGAGGAAGTAAAGCACGGTTTCTGTTGAAGACAAAATAAAACCC
TACAGTAGTAAGATACAGAGGAATGAAGCCAGTCGCGCTCTCGCCCGTAT
GCGTCGTTGGTCGTCGTACGACGGCTGCTGCTGCCGTGTGTTAAAAATGG
CGCATCGTGTGCCGCGGTAGCTTGTTTGTGCGAGCATCCTCTGGGATTTG
TTTTTTGTTGTGTTTTAAAGTATCCTTGGAAGTGAGTATATAGTCTAGTC
TATGTATCACCGGTAGGCGGTAGGGGGTTCTGGCATGGCGATAAGCGCGA
TGACGTAGTACGTACGTGTTGTAACACTACTGTTGTTGTTATTTGTTCGT
GGCAAACGCTATGGTATGGTGTTACACGTGGTGGCGTTGTCTTTTTTTTT
GCAGAGTCCGTCGATGGCTCGGTGGGGGAGTCTCCTTCGTTGTTCTACCC
AGGCGGTTGTTGCTCTTGTTGGTCTCGCGTGATGTATATTATGTAGCCCG
TTCTTGTTTCACTCGAGGACCATCCGTTTTGTTTTGTTTGTGTGTTTTGT
GTGTTTTTTTATGTATTTAATTCATGTATCACTTTACGTTACCACGTCCA
GCTCACACGGGGCTCATAGCTCTTGAAAGCCGTAGTCATAGTTAGGTGTC
CCTTCCCCCCCCCTCCAACTGTCGGAGGTGTCTCTATTAGGAGTATTAGG
AGTAGAGCAATGCTACGGTAGCGGGGGGTACTTTTGGACCCAAAATGCTC
TGCCTGATGGGGCTCTTCAACTGAAGAACTACCCAATATCTTTGAAATGA
CATACATGCGTGTTGTAACATTGTATTCGAAATATACCTAGGCGGTGGGA
TTGTTTCCGGGTTGCAGTTTAAAAGCTTTGTCAAAGTCGGGTATTGGTTG
AGATATAATAGAGCTCTTCACGTGAGGAGCCTCAGAAAATTTGGGTATCC
TCCCTACCGTAGCATGTGTCAGTAGGAACGGTGCTCTGTCTCGAAAGGGA
TGCGTGTTCGATTGTCGCATGACTAAGGCAAGCACAAATGAGTA
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10152:2536..6879-

>mRNA_D-dudresnayi_contig10152.206.1 ID=mRNA_D-dudresnayi_contig10152.206.1|Name=mRNA_D-dudresnayi_contig10152.206.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at D-dudresnayi_contig10152:2536..6879- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGTTCGATTTTGAGCCTGCCGGCACGGTGACGTCAAACAACAGTCC
TACGGGCGCCTCCGCGAATCATGGGCGGGAGGAGGCGCCAGCGTATGACG
ACGGAAGCACTACTACTTCGGCGGTGGAGGCGGCGGCTGCGCCAGCTGGA
GGAGGGGTGATAGCAGCAGAAGCAGCAGCAGCAGCCGCAACAGGAGGAGG
AGCAGGAAGTGGGGCCGGGGGGGTAGGTGGGGAGGGCGGTGCTGGGGCGT
CAGATTGCGTGGTTTTTGTCCACGACAGGATGGTGTTCGATTTTGAGCCT
GCCGGCACGGTGACGTCAAACAACAGTCCTACGGGCGCCTCCGCGAATCA
TGGGCGGGAGGAGGCGCCAGCGTATGACGACGGAAGCACTACTACTTCGG
CGGTGGAGGCGGCGGCTGCGCCAGCTGGAGGAGGGGTGATAGCAGCAGAA
GCAGCAGCAGCAGCCGCAACAGGAGGAGGAGCAGGAAGTGGGGCCGGGGG
GGTAGGTGGGGAGGGCGGTGCTGGGGCGTCAGATTGCGTGGTTTTTGTCC
ACGACAGGTACAACGGGTCGAAACAGCTCTACGTCAACCAGGCGCTCGTC
TACAGCGTGGAAAAGGAGTGCACCGACGGGATGATGAACTCCTGGGTCAT
CCCGCTCTCCTTCGGGCGCGTCGCGTTGAGGCTGACCAACAAGCTCCTCA
GCAAGAGCGGCTTTCAGTACACCCTCACGCGCGAGGACGGCACGGTTCTG
TTCAAGACCAAGTAGTACAACGGGTCGAAACAGCTCTACGTCAACCAGGC
GCTCGTCTACAGCGTGGAAAAGGAGTGCACCGACGGGATGATGAACTCCT
GGGTCATCCCGCTCTCCTTCGGGCGCGTCGCGTTGAGGCTGACCAACAAG
CTCCTCAGCAAGAGCGGCTTTCAGTACACCCTCACGCGCGAGGACGGCAC
GGTTCTGTTCAAGACCAAGTAG
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