mRNA_D-dudresnayi_contig10126.164.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10126.164.1
Unique NamemRNA_D-dudresnayi_contig10126.164.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig10126.164.1 vs. uniprot
Match: D7G174_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G174_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 8.710e-5
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:   88 RITMRDQLPPGWETTVRERAENDVDARGQGAFWY--SFSKGGN--TVRFRSLKDVENFVNSDHPDAAQHRNAARKRK 306
            RI+    LPPGWE    ++ E +    G    WY   + KG N   ++F++L+DVE+FV+SD P A  HR A  KRK
Sbjct:  873 RISSSSNLPPGWEIIRSKQPEKN---NGYACRWYVYKYGKGSNLPNLKFKNLRDVEDFVHSDLPGAKIHRRAMEKRK 946
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10126.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G174_ECTSI8.710e-541.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10126contigD-dudresnayi_contig10126:7837..10470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1054
Cds size1053
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.0954373-CDS-D-dudresnayi_contig10126:7836..87211622927513.0954373-CDS-D-dudresnayi_contig10126:7836..8721Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10126 7837..8721 -
1690556786.6975298-CDS-D-dudresnayi_contig10126:7836..87211690556786.6975298-CDS-D-dudresnayi_contig10126:7836..8721Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10126 7837..8721 -
1622927513.105645-CDS-D-dudresnayi_contig10126:10302..104701622927513.105645-CDS-D-dudresnayi_contig10126:10302..10470Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10126 10303..10470 -
1690556786.712022-CDS-D-dudresnayi_contig10126:10302..104701690556786.712022-CDS-D-dudresnayi_contig10126:10302..10470Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10126 10303..10470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10126.164.1prot_D-dudresnayi_contig10126.164.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10126 7837..10470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10126.164.1

>prot_D-dudresnayi_contig10126.164.1 ID=prot_D-dudresnayi_contig10126.164.1|Name=mRNA_D-dudresnayi_contig10126.164.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=351bp
ATATAGGGGDGGGSRKRSEERSEQRPCYLRITMRDQLPPGWETTVRERAE
NDVDARGQGAFWYSFSKGGNTVRFRSLKDVENFVNSDHPDAAQHRNAARK
RKYGGTALSPSPTATGRGPSTSLSPSSSHKAFSATGSLLPPRDKGTDADK
KKLPGKLKKKRKKLQIPGVQKFAKDGARIYSKGGTSYVKIGDRLQENVVL
PRVEKGGKKGFARGGGGGDGVSETGPHVKKYTKKPGPKGANVEKEDGQER
QKETSNTNKPKLKKKATAVATETEGVKKHGKLPELKKHNTKPGISKEIRD
YLPPGSGDDLDVIPAQFKKRKQKGEGTGAEGEAKKRRKKKLKVAPAHTDP
G
back to top

mRNA from alignment at D-dudresnayi_contig10126:7837..10470-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10126.164.1 ID=mRNA_D-dudresnayi_contig10126.164.1|Name=mRNA_D-dudresnayi_contig10126.164.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2634bp|location=Sequence derived from alignment at D-dudresnayi_contig10126:7837..10470- (Desmarestia dudresnayi DdudBR16 monoicous)
GCGACTGCGACTGCGGGTGGGGGTGGCGACGGTGGTGGCTCTAGGAAACG
TTCAGAAGAACGGTCCGAGCAAAGGCCGTGTTACTTGCGGATTACCATGA
GGGACCAACTCCCGCCCGGGTGGGAGACGACCGTACGCGAGCGCGCTGAG
AATGATGTGGATGCGAGGGTGAGTTATTCGCTTTGGGCGTAGTAACGAGA
AGGGTGTCGTCCAGGAGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
TGTACTCATTTTGTTGCTTGCCTTAGTCATTTGACCATTGACCGCGCATC
CCTTTCGAGACGGGCTCCGTTCCTACTCCGTGTGGATATCTCCAGCATTT
GGGCGCTCTTTACGCTTTTGCCGTATCTTACATAAAAAAAGTTTAGCTTA
TATCTTATCCCCTTCCTGATTCGCCATTTGTGATCACCGTCTATCTCCTC
GGATAGCGATGGTTTTCTCGCGACTATCTGGTGTACTCAACTTCTCCATG
TCACTTTCGTCTATTGTCGTCATCTTCTCCAACACATCCCGTCACTTATA
GTTCACATTCTCCCACTATGTGAGTTCTACTCCCGTCGGGCTTCCCACAA
GGGCACATATCTATGTATCTTCTTCCTCCTGCTCCCGACTACTGGTATAC
CTCTTTCTTATTTCTGGCAAGTCCAGATCTCCTATACGAAATTGCAGTTT
TAGAGTTTTCGCGTAGTCCATGGGCCCGTGTAAATATGTTTTCATACCTA
TCTCTTCTCTTAACCTCGACATGCCGTTCCTCATTGTTTAGGGGGAATGG
GTGGGAGGAGTACTCGTGACAGCGTATGCCATAGTCGTCTACGTATCAAA
CATTGTCCTTGCTTCCCAACAATGCAGGAACAGAGCGATATGCCGAGTTT
TGGCCAGCGGCCAGGCTTCGTTTCACAAAGGATGATGCCAGCTGCTGGCC
GTGATGACCCTTTTGCCTTTGCTACGAACGCCAGACCGATTTGTCGTGTG
TTTCGTTGGATATCACCCTGAATACCCAAGTCGTACCACGAGGACCTCGG
GGGGCTTAGATCTCGTTGCGCGCATAATATGACAGCGCTCACCGGTGTGT
AATCCAATACTGCTGTCGATCTGCGGTTCGACGTCGCGGGATTATTCCTA
GAATTTTCCCCCCTGCGGTTGGAGCGGCGGCGGTGTCACTGCACCGCCAT
GCTCGACAAACACCATGCCGTGACTCGCTTGTACCTCGAAATACGAGGCA
GTCGAAGCTTCAAGTTGAACAGCCTCGTAGCGCTGTGCTGTAGCTGTCGG
GTTCTAAGTAACTGTCGAGTCTTGACGTACGTATGATAACCCATGTTTGT
ATGTGTAACATCCCTGTTGAACAGCCTCTTAGCGCTGTGCTGTAACTGTC
GGATTCTAAGTAACTGTCGAGTCTTGACGTACGTATGATAACCCATGTTT
GTATGTGTAACACCCCTGCCCATTGCGAGCAAGTTGTCCACGTTTTCCAA
TAGCAACGCAACACAATATGTATTAGAGGAGGGGCAGGAGTCCGATGCGT
GTATATACGTACGCTGTGCTGGTGAAACTGCATATGCAAAATTCATTTTT
GTATTTCGTTGTGGCGCGGTTCATACACAGGAGACAGCTACATGGCTCCG
GAGTCTAGCCGCTGCTTCTTATCCCCCCCCGCACTCCCGAAGCCCCTCAA
CGGCAAGCTTATTATTTTCTCCCTGCGTTTGCGCGTTTGACTCATCTAGG
GACAAGGAGCATTTTGGTACTCTTTCTCGAAGGGCGGAAACACCGTACGA
TTCAGATCCCTCAAGGACGTGGAGAATTTCGTGAACTCGGACCATCCAGA
CGCCGCGCAGCATCGAAATGCGGCACGAAAGAGAAAATACGGAGGCACAG
CACTGTCGCCGTCACCAACAGCAACGGGAAGAGGACCATCAACATCGCTA
TCGCCATCGTCGTCGCACAAAGCATTTTCGGCGACGGGCTCCTTATTGCC
TCCTCGAGACAAGGGTACGGACGCAGACAAAAAGAAGTTGCCGGGCAAGC
TCAAGAAAAAGCGGAAAAAACTGCAGATCCCCGGGGTGCAGAAGTTCGCG
AAGGACGGGGCAAGGATTTATTCCAAAGGAGGGACGTCGTACGTGAAGAT
AGGGGACAGGCTGCAGGAAAATGTGGTGCTGCCTCGTGTCGAAAAGGGAG
GCAAGAAAGGTTTTGCCCGTGGTGGTGGTGGTGGTGATGGCGTGTCGGAG
ACGGGTCCTCACGTGAAGAAGTATACCAAGAAGCCCGGGCCGAAGGGAGC
AAACGTCGAGAAGGAGGATGGCCAGGAACGGCAGAAGGAGACGTCGAACA
CCAACAAACCCAAGCTGAAAAAGAAGGCGACCGCCGTCGCGACGGAGACC
GAGGGCGTGAAGAAGCACGGCAAGCTGCCGGAGCTAAAAAAACACAATAC
CAAGCCCGGAATATCGAAGGAAATACGTGACTACCTGCCCCCCGGAAGCG
GAGACGACTTGGACGTGATCCCGGCGCAATTCAAGAAGCGGAAGCAGAAA
GGGGAGGGGACGGGGGCGGAGGGGGAAGCCAAGAAGCGCCGGAAGAAAAA
GTTGAAAGTGGCGCCCGCACACACTGACCCTGGC
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10126:7837..10470-

>mRNA_D-dudresnayi_contig10126.164.1 ID=mRNA_D-dudresnayi_contig10126.164.1|Name=mRNA_D-dudresnayi_contig10126.164.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2106bp|location=Sequence derived from alignment at D-dudresnayi_contig10126:7837..10470- (Desmarestia dudresnayi DdudBR16 monoicous)
GCGACTGCGACTGCGGGTGGGGGTGGCGACGGTGGTGGCTCTAGGAAACG
TTCAGAAGAACGGTCCGAGCAAAGGCCGTGTTACTTGCGGATTACCATGA
GGGACCAACTCCCGCCCGGGTGGGAGACGACCGTACGCGAGCGCGCTGAG
AATGATGTGGATGCGAGGGCGACTGCGACTGCGGGTGGGGGTGGCGACGG
TGGTGGCTCTAGGAAACGTTCAGAAGAACGGTCCGAGCAAAGGCCGTGTT
ACTTGCGGATTACCATGAGGGACCAACTCCCGCCCGGGTGGGAGACGACC
GTACGCGAGCGCGCTGAGAATGATGTGGATGCGAGGGGACAAGGAGCATT
TTGGTACTCTTTCTCGAAGGGCGGAAACACCGTACGATTCAGATCCCTCA
AGGACGTGGAGAATTTCGTGAACTCGGACCATCCAGACGCCGCGCAGCAT
CGAAATGCGGCACGAAAGAGAAAATACGGAGGCACAGCACTGTCGCCGTC
ACCAACAGCAACGGGAAGAGGACCATCAACATCGCTATCGCCATCGTCGT
CGCACAAAGCATTTTCGGCGACGGGCTCCTTATTGCCTCCTCGAGACAAG
GGTACGGACGCAGACAAAAAGAAGTTGCCGGGCAAGCTCAAGAAAAAGCG
GAAAAAACTGCAGATCCCCGGGGTGCAGAAGTTCGCGAAGGACGGGGCAA
GGATTTATTCCAAAGGAGGGACGTCGTACGTGAAGATAGGGGACAGGCTG
CAGGAAAATGTGGTGCTGCCTCGTGTCGAAAAGGGAGGCAAGAAAGGTTT
TGCCCGTGGTGGTGGTGGTGGTGATGGCGTGTCGGAGACGGGTCCTCACG
TGAAGAAGTATACCAAGAAGCCCGGGCCGAAGGGAGCAAACGTCGAGAAG
GAGGATGGCCAGGAACGGCAGAAGGAGACGTCGAACACCAACAAACCCAA
GCTGAAAAAGAAGGCGACCGCCGTCGCGACGGAGACCGAGGGCGTGAAGA
AGCACGGCAAGCTGCCGGAGCTAAAAAAACACAATACCAAGCCCGGAATA
TCGAAGGAAATACGTGACTACCTGCCCCCCGGAAGCGGAGACGACTTGGA
CGTGATCCCGGCGCAATTCAAGAAGCGGAAGCAGAAAGGGGAGGGGACGG
GGGCGGAGGGGGAAGCCAAGAAGCGCCGGAAGAAAAAGTTGAAAGTGGCG
CCCGCACACACTGACCCTGGCGGACAAGGAGCATTTTGGTACTCTTTCTC
GAAGGGCGGAAACACCGTACGATTCAGATCCCTCAAGGACGTGGAGAATT
TCGTGAACTCGGACCATCCAGACGCCGCGCAGCATCGAAATGCGGCACGA
AAGAGAAAATACGGAGGCACAGCACTGTCGCCGTCACCAACAGCAACGGG
AAGAGGACCATCAACATCGCTATCGCCATCGTCGTCGCACAAAGCATTTT
CGGCGACGGGCTCCTTATTGCCTCCTCGAGACAAGGGTACGGACGCAGAC
AAAAAGAAGTTGCCGGGCAAGCTCAAGAAAAAGCGGAAAAAACTGCAGAT
CCCCGGGGTGCAGAAGTTCGCGAAGGACGGGGCAAGGATTTATTCCAAAG
GAGGGACGTCGTACGTGAAGATAGGGGACAGGCTGCAGGAAAATGTGGTG
CTGCCTCGTGTCGAAAAGGGAGGCAAGAAAGGTTTTGCCCGTGGTGGTGG
TGGTGGTGATGGCGTGTCGGAGACGGGTCCTCACGTGAAGAAGTATACCA
AGAAGCCCGGGCCGAAGGGAGCAAACGTCGAGAAGGAGGATGGCCAGGAA
CGGCAGAAGGAGACGTCGAACACCAACAAACCCAAGCTGAAAAAGAAGGC
GACCGCCGTCGCGACGGAGACCGAGGGCGTGAAGAAGCACGGCAAGCTGC
CGGAGCTAAAAAAACACAATACCAAGCCCGGAATATCGAAGGAAATACGT
GACTACCTGCCCCCCGGAAGCGGAGACGACTTGGACGTGATCCCGGCGCA
ATTCAAGAAGCGGAAGCAGAAAGGGGAGGGGACGGGGGCGGAGGGGGAAG
CCAAGAAGCGCCGGAAGAAAAAGTTGAAAGTGGCGCCCGCACACACTGAC
CCTGGC
back to top