mRNA_D-dudresnayi_contig1011.151.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1011.151.1
Unique NamemRNA_D-dudresnayi_contig1011.151.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1011.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1011contigD-dudresnayi_contig1011:28195..28752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1011.151.1prot_D-dudresnayi_contig1011.151.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1011 28200..28640 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927512.1581976-UTR-D-dudresnayi_contig1011:28194..281991622927512.1581976-UTR-D-dudresnayi_contig1011:28194..28199Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1011 28195..28199 +
1690556786.1989276-UTR-D-dudresnayi_contig1011:28194..281991690556786.1989276-UTR-D-dudresnayi_contig1011:28194..28199Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1011 28195..28199 +
1622927512.183136-UTR-D-dudresnayi_contig1011:28640..287521622927512.183136-UTR-D-dudresnayi_contig1011:28640..28752Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1011 28641..28752 +
1690556786.2136686-UTR-D-dudresnayi_contig1011:28640..287521690556786.2136686-UTR-D-dudresnayi_contig1011:28640..28752Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig1011 28641..28752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927512.1705596-CDS-D-dudresnayi_contig1011:28199..286401622927512.1705596-CDS-D-dudresnayi_contig1011:28199..28640Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1011 28200..28640 +
1690556786.206166-CDS-D-dudresnayi_contig1011:28199..286401690556786.206166-CDS-D-dudresnayi_contig1011:28199..28640Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1011 28200..28640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1011.151.1

>prot_D-dudresnayi_contig1011.151.1 ID=prot_D-dudresnayi_contig1011.151.1|Name=mRNA_D-dudresnayi_contig1011.151.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=147bp
MHVELSCGCLSRSVVCCSSTRASKRAKAVGEGYPVDLLSFLSYLSPGCLC
PSGKWVSLFFLHSVKRVHLLPEEQTYTTTVVVVVTYYTTVSTNMVEEEKS
CPATATAEETFVDLAVDGELAPSYQLRICRQCWGILWSRRLPTAKV*
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mRNA from alignment at D-dudresnayi_contig1011:28195..28752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1011.151.1 ID=mRNA_D-dudresnayi_contig1011.151.1|Name=mRNA_D-dudresnayi_contig1011.151.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=558bp|location=Sequence derived from alignment at D-dudresnayi_contig1011:28195..28752+ (Desmarestia dudresnayi DdudBR16 monoicous)
TATATATGCATGTTGAGTTGTCCTGTGGATGCCTGTCGAGGTCAGTTGTC
TGCTGCTCAAGCACGCGAGCAAGTAAGCGAGCGAAGGCAGTAGGTGAGGG
GTATCCCGTAGATCTCCTTTCTTTCCTTTCTTATTTATCTCCGGGTTGTT
TGTGTCCTTCTGGGAAGTGGGTGTCCCTCTTTTTCCTTCATTCCGTGAAA
CGGGTGCACTTGCTGCCTGAGGAACAGACATACACCACAACAGTTGTAGT
TGTCGTGACATATTATACAACAGTCAGTACGAACATGGTAGAAGAAGAAA
AATCTTGCCCGGCGACGGCGACTGCTGAAGAAACCTTCGTAGACCTTGCG
GTGGACGGCGAGTTGGCGCCATCATATCAACTGCGGATATGCAGGCAGTG
CTGGGGGATATTGTGGAGTCGACGGCTGCCAACTGCGAAGGTCTGAGGAA
TCTGTTCAGGGTTTGACGTCTGTTTGTTTCATCCATGGGGTGACGTCAGG
AAGAAAACTCCCATAACGGGGGCGGGTGCATCGGCGAGTTCCTCCGCTCT
CGTTGTGC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1011:28195..28752+

>mRNA_D-dudresnayi_contig1011.151.1 ID=mRNA_D-dudresnayi_contig1011.151.1|Name=mRNA_D-dudresnayi_contig1011.151.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at D-dudresnayi_contig1011:28195..28752+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCATGTTGAGTTGTCCTGTGGATGCCTGTCGAGGTCAGTTGTCTGCTG
CTCAAGCACGCGAGCAAGTAAGCGAGCGAAGGCAGTAGGTGAGGGGTATC
CCGTAGATCTCCTTTCTTTCCTTTCTTATTTATCTCCGGGTTGTTTGTGT
CCTTCTGGGAAGTGGGTGTCCCTCTTTTTCCTTCATTCCGTGAAACGGGT
GCACTTGCTGCCTGAGGAACAGACATACACCACAACAGTTGTAGTTGTCG
TGACATATTATACAACAGTCAGTACGAACATGGTAGAAGAAGAAAAATCT
TGCCCGGCGACGGCGACTGCTGAAGAAACCTTCGTAGACCTTGCGGTGGA
CGGCGAGTTGGCGCCATCATATCAACTGCGGATATGCAGGCAGTGCTGGG
GGATATTGTGGAGTCGACGGCTGCCAACTGCGAAGGTCTGAATGCATGTT
GAGTTGTCCTGTGGATGCCTGTCGAGGTCAGTTGTCTGCTGCTCAAGCAC
GCGAGCAAGTAAGCGAGCGAAGGCAGTAGGTGAGGGGTATCCCGTAGATC
TCCTTTCTTTCCTTTCTTATTTATCTCCGGGTTGTTTGTGTCCTTCTGGG
AAGTGGGTGTCCCTCTTTTTCCTTCATTCCGTGAAACGGGTGCACTTGCT
GCCTGAGGAACAGACATACACCACAACAGTTGTAGTTGTCGTGACATATT
ATACAACAGTCAGTACGAACATGGTAGAAGAAGAAAAATCTTGCCCGGCG
ACGGCGACTGCTGAAGAAACCTTCGTAGACCTTGCGGTGGACGGCGAGTT
GGCGCCATCATATCAACTGCGGATATGCAGGCAGTGCTGGGGGATATTGT
GGAGTCGACGGCTGCCAACTGCGAAGGTCTGA
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