mRNA_D-dudresnayi_contig10100.139.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10100.139.1
Unique NamemRNA_D-dudresnayi_contig10100.139.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10100.139.1 vs. uniprot
Match: D7FM90_ECTSI (Protein disulfide-isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM90_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 7.230e-24
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 MVVIADMSSDSAIKKYQYSGDITEAALLAFEEQFMKGELKPSLKSEEPSDDDFAEPVKVLKGKSFASIVLDN 216
            MVVIADM+S+SAIKKY Y   ITEA LL FE++F  GEL P+LKSEEP+D+D AEPVKVLKGKSF+ +VL+N
Sbjct:  313 MVVIADMTSNSAIKKYMYPDKITEAGLLGFEKKFFDGELVPTLKSEEPADEDLAEPVKVLKGKSFSKLVLEN 384          
BLAST of mRNA_D-dudresnayi_contig10100.139.1 vs. uniprot
Match: D3J0R5_9PHAE (Putative disulfide isomerase (Fragment) n=5 Tax=Fucus TaxID=3011 RepID=D3J0R5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.360e-22
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   10 IADMSSDSAIKKYQYSGDITEAALLAFEEQFMKGELKPSLKSEEPSDDDFAEPVKVLKGKSFASIVLDNG 219
            IADMSS  A+KKY + G+ TE AL+ FEE+F KG+L  +LKSEEPS++D   PVKV+KGKSF+ IV++NG
Sbjct:    1 IADMSSTGAMKKYSFEGEFTEDALMEFEEKFFKGQLTQTLKSEEPSEEDLEAPVKVVKGKSFSKIVMENG 70          
BLAST of mRNA_D-dudresnayi_contig10100.139.1 vs. uniprot
Match: A0A836CFW1_9STRA (Protein disulfide-isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.250e-15
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    4 VVIADMSSDSAIKKYQYSGDITEAALLAFEEQFMKGELKPSLKSEEPSDDDFAEPVKVLKGKSFASIVLDN 216
            +VIADM     IKKY + G + +A++ +F   F  G LKPSLKSEEP+D+D A+PVKV+KGKSF SIV+++
Sbjct:  313 MVIADMQQ--GIKKYLFEGTLDKASITSFISDFQAGNLKPSLKSEEPADEDLAKPVKVIKGKSFESIVVNS 381          
BLAST of mRNA_D-dudresnayi_contig10100.139.1 vs. uniprot
Match: A0A7S0PX59_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PX59_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 1.230e-14
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    7 VIADMSSDSAIKKYQYSGDITEAALLAFEEQFMKGELKPSLKSEEPSDDDFAEPVKVLKGKSFASIVLDN 216
            V+AD+ S+  IKK+ ++G    AA+ AF   F+ GELKP+LKSEE + +D A  V VLKGKSFA +VLDN
Sbjct:  155 VLADLGSEGGIKKFPFAGPHDSAAITAFATSFVNGELKPTLKSEEVTPEDTAGDVVVLKGKSFAELVLDN 224          
BLAST of mRNA_D-dudresnayi_contig10100.139.1 vs. uniprot
Match: A0A836CIU4_9STRA (Protein disulfide-isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIU4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.990e-14
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    4 VVIADMSSDSAIKKYQYSGD-ITEAALLAFEEQFMKGELKPSLKSEEPSDDDFAEPVKVLKGKSFASIVLDN 216
            +VIA+M     +KK+ Y G  +T+ ++L FE+ ++ G LKP LKSEEP D+D A PVKV+KGKSF SIV+DN
Sbjct:  312 IVIAEMKG-GGVKKFLYDGGALTKDSILKFEKDYLAGNLKPFLKSEEPVDEDLAAPVKVVKGKSFQSIVVDN 382          
BLAST of mRNA_D-dudresnayi_contig10100.139.1 vs. uniprot
Match: A0A7S2XW86_9STRA (Protein disulfide-isomerase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW86_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.930e-13
Identity = 33/70 (47.14%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    7 VIADMSSDSAIKKYQYSGDITEAALLAFEEQFMKGELKPSLKSEEPSDDDFAEPVKVLKGKSFASIVLDN 216
            +I+DMS +  +KK+ Y G ++   + A  ++F  GELKP+LKSEEP+DDD +EPVKV+KG +F+ +V+++
Sbjct:  467 LISDMSGEGNMKKFGYEGAVSGDNISAHLDKFFAGELKPTLKSEEPADDDLSEPVKVIKGTTFSELVVES 536          
BLAST of mRNA_D-dudresnayi_contig10100.139.1 vs. uniprot
Match: A0A812IJ34_9DINO (Protein disulfide-isomerase n=4 Tax=Sar TaxID=2698737 RepID=A0A812IJ34_9DINO)

HSP 1 Score: 62.0 bits (149), Expect = 1.640e-9
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    7 VIADMSSDSAIKKYQYSGDITEAALLAFEEQFMKGELKPSLKSEEPSDDDFAEPVKVLKGKSFASIVLDNG 219
            V+  M   +A++K+ +SG +   AL  F    +KG++KP+LKSEEP   D   PV V+KGKSF  IV + G
Sbjct:  367 VVVTMPEGAAMQKFPFSGSLAGPALGEFTGSVLKGDVKPTLKSEEPDASDLEGPVVVVKGKSFRDIVYEEG 437          
BLAST of mRNA_D-dudresnayi_contig10100.139.1 vs. uniprot
Match: A0A7S2H085_9STRA (Protein disulfide-isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H085_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.050e-6
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    4 VVIADMSSDSA-IKKYQYSGD--ITEAALLAFEEQFMKGELKPSLKSEEPSDDDFAEPVKVLKGKSFASIVLDN 216
            VVIAD++ +   +KKY + G    +   L  FE+ F+ G L+P+LKSE+        PVKV+ GKSF  +V+++
Sbjct:  312 VVIADLNKEGGGMKKYLFEGGDAFSLEDLTQFEQDFLDGALRPTLKSEDDKPSHMKNPVKVITGKSFEEVVVNS 385          
BLAST of mRNA_D-dudresnayi_contig10100.139.1 vs. uniprot
Match: A0A2A6B788_PRIPA (Dehydrogenase n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A2A6B788_PRIPA)

HSP 1 Score: 50.8 bits (120), Expect = 1.450e-5
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   61 DITEAALLAFEEQFMKGELKPSLKSEEPSDDDFAEPVKVLKGKSFASIVLDNG 219
            D+T   ++AF E+F+ GELKP   SEE  DD  A+PVKVL GK+F  +V  +G
Sbjct:  349 DLTTENIIAFNERFIDGELKPHHISEEIPDDWDAKPVKVLVGKNFKEVVKGSG 401          
BLAST of mRNA_D-dudresnayi_contig10100.139.1 vs. uniprot
Match: Q8LSK4_PHYPA (Protein disulfide-isomerase n=1 Tax=Physcomitrium patens TaxID=3218 RepID=Q8LSK4_PHYPA)

HSP 1 Score: 48.9 bits (115), Expect = 6.800e-5
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   43 KYQYSGDITEAALLAFEEQFMKGELKPSLKSEEPSDDDFAEPVKVLKGKSFASIVLDN 216
            K++Y GD  + +L  F E+F+  +L P  KSE+  + +  EPVKV+ GKSF  IVLD+
Sbjct:  323 KFEYDGDFDQKSLKDFAEKFVANKLTPYFKSEDVPEKN-NEPVKVVVGKSFEDIVLDD 379          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10100.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FM90_ECTSI7.230e-2470.83Protein disulfide-isomerase n=2 Tax=Ectocarpus Tax... [more]
D3J0R5_9PHAE1.360e-2261.43Putative disulfide isomerase (Fragment) n=5 Tax=Fu... [more]
A0A836CFW1_9STRA8.250e-1554.93Protein disulfide-isomerase n=1 Tax=Tribonema minu... [more]
A0A7S0PX59_9EUKA1.230e-1454.29Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A836CIU4_9STRA3.990e-1454.17Protein disulfide-isomerase n=1 Tax=Tribonema minu... [more]
A0A7S2XW86_9STRA1.930e-1347.14Protein disulfide-isomerase (Fragment) n=1 Tax=Fib... [more]
A0A812IJ34_9DINO1.640e-943.66Protein disulfide-isomerase n=4 Tax=Sar TaxID=2698... [more]
A0A7S2H085_9STRA4.050e-639.19Protein disulfide-isomerase n=1 Tax=Dictyocha spec... [more]
A0A2A6B788_PRIPA1.450e-550.94Dehydrogenase n=2 Tax=Pristionchus pacificus TaxID... [more]
Q8LSK4_PHYPA6.800e-544.83Protein disulfide-isomerase n=1 Tax=Physcomitrium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10100contigD-dudresnayi_contig10100:8901..9656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.2e-19
Seed eggNOG ortholog2880.D7FM90
Preferred nameP4HB
KEGG koko:K09580,ko:K09581,ko:K18274,ko:K20354
KEGG Pathwayko04141,map04141
GOsGO:0000003,GO:0001666,GO:0003006,GO:0003674,GO:0003756,GO:0003810,GO:0003824,GO:0004656,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005788,GO:0005791,GO:0005793,GO:0005886,GO:0006082,GO:0006457,GO:0006464,GO:0006520,GO:0006575,GO:0006621,GO:0006807,GO:0006928,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008104,GO:0008150,GO:0008152,GO:0009628,GO:0009897,GO:0009966,GO:0009986,GO:0009987,GO:0010033,GO:0010646,GO:0010941,GO:0012505,GO:0015036,GO:0015037,GO:0016020,GO:0016043,GO:0016222,GO:0016477,GO:0016491,GO:0016667,GO:0016705,GO:0016706,GO:0016740,GO:0016746,GO:0016755,GO:0016853,GO:0016860,GO:0016864,GO:0018126,GO:0018193,GO:0018208,GO:0018401,GO:0019221,GO:0019471,GO:0019511,GO:0019538,GO:0019752,GO:0019798,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030154,GO:0031543,GO:0031545,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034097,GO:0034377,GO:0034378,GO:0034379,GO:0034613,GO:0034663,GO:0034975,GO:0034976,GO:0035437,GO:0035722,GO:0036211,GO:0036293,GO:0036294,GO:0036477,GO:0038155,GO:0040011,GO:0042221,GO:0042981,GO:0043025,GO:0043062,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043687,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044297,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044877,GO:0045169,GO:0045185,GO:0046596,GO:0046598,GO:0046982,GO:0046983,GO:0048232,GO:0048468,GO:0048471,GO:0048515,GO:0048518,GO:0048524,GO:0048583,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050792,GO:0050794,GO:0050839,GO:0050896,GO:0051179,GO:0051213,GO:0051235,GO:0051641,GO:0051651,GO:0051674,GO:0051704,GO:0051716,GO:0055114,GO:0060187,GO:0065003,GO:0065005,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070671,GO:0070727,GO:0070732,GO:0070887,GO:0070972,GO:0071310,GO:0071345,GO:0071349,GO:0071453,GO:0071456,GO:0071704,GO:0071825,GO:0071827,GO:0071840,GO:0071944,GO:0072595,GO:0080058,GO:0080134,GO:0080135,GO:0097006,GO:0097458,GO:0098552,GO:0140096,GO:1900407,GO:1901564,GO:1901605,GO:1902175,GO:1902494,GO:1902531,GO:1902882,GO:1903201,GO:1903900,GO:1903902,GO:1990204,GO:2001233,GO:2001242
EggNOG free text desc.intramolecular oxidoreductase activity, transposing S-S bonds
EggNOG OGsCOG0526@1,KOG0190@2759
EC5.3.4.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000,ko03110,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionprotein disulfide isomerase
Ec32 orthologEc-16_004640.1
Exons2
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.474619-CDS-D-dudresnayi_contig10100:8900..89501622927511.474619-CDS-D-dudresnayi_contig10100:8900..8950Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10100 8901..8950 +
1690556785.8468497-CDS-D-dudresnayi_contig10100:8900..89501690556785.8468497-CDS-D-dudresnayi_contig10100:8900..8950Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10100 8901..8950 +
1622927511.4872513-CDS-D-dudresnayi_contig10100:9487..96561622927511.4872513-CDS-D-dudresnayi_contig10100:9487..9656Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10100 9488..9656 +
1690556785.8561423-CDS-D-dudresnayi_contig10100:9487..96561690556785.8561423-CDS-D-dudresnayi_contig10100:9487..9656Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10100 9488..9656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10100.139.1prot_D-dudresnayi_contig10100.139.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10100 8901..9656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10100.139.1

>prot_D-dudresnayi_contig10100.139.1 ID=prot_D-dudresnayi_contig10100.139.1|Name=mRNA_D-dudresnayi_contig10100.139.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=73bp
MVVIADMSSDSAIKKYQYSGDITEAALLAFEEQFMKGELKPSLKSEEPSD
DDFAEPVKVLKGKSFASIVLDNG
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mRNA from alignment at D-dudresnayi_contig10100:8901..9656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10100.139.1 ID=mRNA_D-dudresnayi_contig10100.139.1|Name=mRNA_D-dudresnayi_contig10100.139.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=756bp|location=Sequence derived from alignment at D-dudresnayi_contig10100:8901..9656+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGGTCATCGCCGACATGAGCTCCGACAGCGCCATCAAGAAGTACCA GTGAGTTGAGCTTGGTGGAAGCTGTGAGACCAATGGTTGTGGTATTTCGG TAGCGGTCGATGCTTGCATCCTTGCGGAGTGAGGTAGCCGTGTATGACGT CCTTTTCGACGAAGAGGACGGTAGTAACGTGTGAAAACCTATTTTTAAGG GGTATCCACTGCCTCGTTCGACCGTCGTGCTGGAGAGTTGCAGACGCGAA CTTGAGCCTCATACGGTGGTTCTCGTAAAAGTCAAGTTTGTAAAAGCCGA AGACGGCTACGAGGAAATACGTAGTTCGTCCTTGCATGTCTGCTATTCCG TGTATGTGCACAGCAGCATTTACAACACGCTGTTATCGTAAAGAGTACAC GGCTGTGTCGTCGGCTGTGTATTTTTGCTGTTGGTTGTCACGGTTCCGTA TCTTTTATTTGATGGAACCCGCTTGGTTTGAATCCATGAGCGATCGATTC ATCGAAATGAGAGAAAATAGAAGCAACAGTGTTGTTGACACCCCTAGCCC CGTGTCCCCTTCATTGCCCTTTTAATGCGCATTGCAGGTACTCCGGAGAC ATCACTGAGGCCGCTCTGTTGGCATTTGAAGAACAGTTCATGAAGGGGGA GTTGAAGCCCAGCCTCAAGTCCGAGGAGCCGTCTGACGATGACTTCGCAG AACCCGTGAAGGTTTTGAAGGGCAAGAGCTTCGCCAGCATCGTCCTGGAC AACGGT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10100:8901..9656+

>mRNA_D-dudresnayi_contig10100.139.1 ID=mRNA_D-dudresnayi_contig10100.139.1|Name=mRNA_D-dudresnayi_contig10100.139.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at D-dudresnayi_contig10100:8901..9656+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGTGGTCATCGCCGACATGAGCTCCGACAGCGCCATCAAGAAGTACCA
ATGGTGGTCATCGCCGACATGAGCTCCGACAGCGCCATCAAGAAGTACCA
GTACTCCGGAGACATCACTGAGGCCGCTCTGTTGGCATTTGAAGAACAGT
TCATGAAGGGGGAGTTGAAGCCCAGCCTCAAGTCCGAGGAGCCGTCTGAC
GATGACTTCGCAGAACCCGTGAAGGTTTTGAAGGGCAAGAGCTTCGCCAG
CATCGTCCTGGACAACGGTGTACTCCGGAGACATCACTGAGGCCGCTCTG
TTGGCATTTGAAGAACAGTTCATGAAGGGGGAGTTGAAGCCCAGCCTCAA
GTCCGAGGAGCCGTCTGACGATGACTTCGCAGAACCCGTGAAGGTTTTGA
AGGGCAAGAGCTTCGCCAGCATCGTCCTGGACAACGGT
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