mRNA_D-dudresnayi_contig1010.138.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig1010.138.1
Unique NamemRNA_D-dudresnayi_contig1010.138.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig1010.138.1 vs. uniprot
Match: D7G4C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4C1_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.350e-15
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 LIAEWIELPLVKQLQLASISICNDCRTSTSFHVRVVSRTPRRLWMGATSLTSRRRGGKDMATSRVSPLHTSRLTFGQFYNRPVENVVWPAQL 276
            ++++W  L  VKQLQLAS+SIC++ R  T+FH+RVV RTP+RLW   +S       GK + T  V P+    LTF +++   V NVVW A L
Sbjct:    1 MLSKWATLKSVKQLQLASLSICSESRACTAFHLRVVRRTPKRLWTTTSST------GKRVGTDGVPPMRVDWLTFREYFEPAVRNVVWRAGL 86
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BLAST of mRNA_D-dudresnayi_contig1010.138.1 vs. uniprot
Match: A0A6H5LB16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB16_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.570e-12
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:    1 LIAEWIELPLVKQLQLASISICNDCRTSTSFHVRVVSRTPRRLWMGATSLTSRRRGGKDMATSRVSPLHTSRLTFGQFYNRPVENVVWPAQL 276
            ++++W  L  VKQLQLAS+SIC++ R   +FH+RV  RTP+RLW      T+ R  GK + T  V P+    LTF + +   V NVVW A L
Sbjct:    1 MLSKWATLKSVKQLQLASLSICSESRACIAFHLRVGRRTPKRLW------TTTRSTGKRVGTDSVPPMRVDWLTFRECFEPAVRNVVWRAGL 86
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BLAST of mRNA_D-dudresnayi_contig1010.138.1 vs. uniprot
Match: A0A6H5L639_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L639_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.110e-10
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:    1 LIAEWIELPLVKQLQLASISICNDCRTSTSFHVRVVSRTPRRLWMGATSLTSRRRGGKDMATSRVSPLHTSRLTFGQFYNRPVENVVWPAQL 276
            L++E + + ++KQLQLAS SIC DCR  T FHV V SRTPRRLW  +     + R  K      V P+   +L     +N  +  + WP +L
Sbjct:  108 LLSELVPVTIIKQLQLASSSICGDCRELTEFHVNVNSRTPRRLWTASRDARGQGRSRKVAGVPGVPPVLVRQLKLSDCFNPTLTGIRWPERL 199
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BLAST of mRNA_D-dudresnayi_contig1010.138.1 vs. uniprot
Match: D7G4A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A9_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.350e-9
Identity = 34/83 (40.96%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   28 LVKQLQLASISICNDCRTSTSFHVRVVSRTPRRLWMGATSLTSRRRGGKDMATSRVSPLHTSRLTFGQFYNRPVENVVWPAQL 276
            ++KQLQLAS S+C D R  T FHV + S TPRRLW  +     +RR  K      V P+   +LT    +N  V  + WP +L
Sbjct:    2 IIKQLQLASSSVCGDYRELTEFHVNLNSWTPRRLWTASRDARGQRRSRKAAGVPGVPPVLVRQLTLSDCFNPKVTGMRWPERL 84
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BLAST of mRNA_D-dudresnayi_contig1010.138.1 vs. uniprot
Match: D7FUL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL9_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.730e-5
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:   34 KQLQLASISICNDCRTSTSFHVRVVSRTPRRLWMGATSLTSRRRGGKDMATSRVSPLHT-SRLTFGQFYNRPVENVVWPAQL 276
            K+LQLAS+ +C  CR + + H+RV + TP RL+  A S +           +RV  L    +LTFG+ +NRP+E V +PA L
Sbjct:   54 KELQLASLQLCEACRDAAALHLRVDTSTPLRLFAPADSPSD-----DSEEDTRVPRLRAREQLTFGRRFNRPLEAVSFPASL 130
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig1010.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G4C1_ECTSI4.350e-1545.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LB16_9PHAE2.570e-1244.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L639_9PHAE2.110e-1040.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4A9_ECTSI2.350e-940.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL9_ECTSI3.730e-540.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig1010contigD-dudresnayi_contig1010:7922..9076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1155
Cds size1155
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.42716-CDS-D-dudresnayi_contig1010:7921..90761622927511.42716-CDS-D-dudresnayi_contig1010:7921..9076Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1010 7922..9076 -
1690556785.8388464-CDS-D-dudresnayi_contig1010:7921..90761690556785.8388464-CDS-D-dudresnayi_contig1010:7921..9076Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig1010 7922..9076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig1010.138.1prot_D-dudresnayi_contig1010.138.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig1010 7922..9076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig1010.138.1

>prot_D-dudresnayi_contig1010.138.1 ID=prot_D-dudresnayi_contig1010.138.1|Name=mRNA_D-dudresnayi_contig1010.138.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=385bp
LIAEWIELPLVKQLQLASISICNDCRTSTSFHVRVVSRTPRRLWMGATSL
TSRRRGGKDMATSRVSPLHTSRLTFGQFYNRPVENVVWPAQLHQVTFGKL
FNQSISCVNWPSNLVDVRFGCKFDMPITRVTWPAGLKKIRFGCGFDQDLE
GVSWPRGLQEIKLGGRFDKPICGVVWPRDLKVLDLGWAFNQPVENVVFPE
GLREMFFSDLFDQPVEAAVFPQSLERLCFGVTFNQEVRRINWPVNLKHLT
FGCLFSKSLEHIDFPGGMEEMELGCSWNHPLEQVAWPKGLATLVLGYDFD
HSLGNVVWPDGLRNLYLGDSFSHSLVGVKWPSGMKHITIGDFFDRPLHGV
VWPAGLEELSFGASFCQRLEGVVWPAKVKSVTFGQ
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mRNA from alignment at D-dudresnayi_contig1010:7922..9076-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig1010.138.1 ID=mRNA_D-dudresnayi_contig1010.138.1|Name=mRNA_D-dudresnayi_contig1010.138.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1155bp|location=Sequence derived from alignment at D-dudresnayi_contig1010:7922..9076- (Desmarestia dudresnayi DdudBR16 monoicous)
CTCATCGCCGAGTGGATCGAGTTACCTCTCGTCAAGCAACTCCAACTTGC
GTCAATATCGATTTGCAACGACTGTCGCACGTCGACCTCTTTCCATGTCC
GAGTGGTATCGAGGACCCCAAGGCGCCTGTGGATGGGAGCAACAAGCCTA
ACCAGTCGCCGGCGTGGCGGTAAGGATATGGCAACGTCAAGGGTATCTCC
CCTGCACACCAGCCGCCTGACATTTGGCCAATTTTATAATCGCCCGGTAG
AAAACGTGGTGTGGCCAGCGCAACTCCACCAGGTCACATTCGGGAAATTA
TTCAATCAGTCCATCAGTTGTGTGAATTGGCCATCAAATCTGGTGGATGT
GCGATTCGGGTGCAAGTTTGACATGCCTATCACCAGGGTGACGTGGCCTG
CAGGGTTGAAGAAGATCAGATTTGGGTGCGGCTTCGATCAGGACTTGGAG
GGTGTATCGTGGCCCCGTGGTCTTCAGGAAATCAAACTCGGGGGTAGATT
TGATAAACCAATATGTGGGGTGGTATGGCCGAGAGATTTGAAGGTTCTGG
ATCTGGGGTGGGCCTTCAATCAGCCAGTGGAGAATGTAGTATTTCCGGAG
GGCCTAAGGGAAATGTTTTTCAGCGATCTGTTTGATCAGCCAGTCGAGGC
CGCAGTATTTCCCCAGAGCTTGGAACGCCTTTGCTTCGGGGTCACGTTCA
ATCAGGAGGTCCGGCGGATAAATTGGCCGGTCAACCTCAAGCACCTGACC
TTCGGGTGTCTTTTCAGTAAGAGCCTCGAGCACATCGATTTTCCTGGAGG
AATGGAGGAAATGGAGCTCGGGTGCAGTTGGAACCACCCGCTTGAACAGG
TCGCCTGGCCCAAAGGACTGGCAACCTTAGTGCTGGGCTACGACTTCGAC
CATTCTCTGGGAAACGTGGTGTGGCCAGATGGGCTCCGAAATCTTTACCT
GGGTGACTCTTTTAGCCACTCCCTGGTTGGAGTGAAGTGGCCGTCTGGTA
TGAAGCACATCACCATCGGGGATTTTTTCGATCGCCCCCTTCACGGTGTA
GTTTGGCCGGCAGGGCTGGAAGAGCTGTCCTTCGGTGCAAGCTTCTGCCA
GAGACTCGAGGGCGTGGTATGGCCTGCGAAGGTAAAATCCGTTACCTTCG
GGCAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig1010:7922..9076-

>mRNA_D-dudresnayi_contig1010.138.1 ID=mRNA_D-dudresnayi_contig1010.138.1|Name=mRNA_D-dudresnayi_contig1010.138.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=2310bp|location=Sequence derived from alignment at D-dudresnayi_contig1010:7922..9076- (Desmarestia dudresnayi DdudBR16 monoicous)
CTCATCGCCGAGTGGATCGAGTTACCTCTCGTCAAGCAACTCCAACTTGC
GTCAATATCGATTTGCAACGACTGTCGCACGTCGACCTCTTTCCATGTCC
GAGTGGTATCGAGGACCCCAAGGCGCCTGTGGATGGGAGCAACAAGCCTA
ACCAGTCGCCGGCGTGGCGGTAAGGATATGGCAACGTCAAGGGTATCTCC
CCTGCACACCAGCCGCCTGACATTTGGCCAATTTTATAATCGCCCGGTAG
AAAACGTGGTGTGGCCAGCGCAACTCCACCAGGTCACATTCGGGAAATTA
TTCAATCAGTCCATCAGTTGTGTGAATTGGCCATCAAATCTGGTGGATGT
GCGATTCGGGTGCAAGTTTGACATGCCTATCACCAGGGTGACGTGGCCTG
CAGGGTTGAAGAAGATCAGATTTGGGTGCGGCTTCGATCAGGACTTGGAG
GGTGTATCGTGGCCCCGTGGTCTTCAGGAAATCAAACTCGGGGGTAGATT
TGATAAACCAATATGTGGGGTGGTATGGCCGAGAGATTTGAAGGTTCTGG
ATCTGGGGTGGGCCTTCAATCAGCCAGTGGAGAATGTAGTATTTCCGGAG
GGCCTAAGGGAAATGTTTTTCAGCGATCTGTTTGATCAGCCAGTCGAGGC
CGCAGTATTTCCCCAGAGCTTGGAACGCCTTTGCTTCGGGGTCACGTTCA
ATCAGGAGGTCCGGCGGATAAATTGGCCGGTCAACCTCAAGCACCTGACC
TTCGGGTGTCTTTTCAGTAAGAGCCTCGAGCACATCGATTTTCCTGGAGG
AATGGAGGAAATGGAGCTCGGGTGCAGTTGGAACCACCCGCTTGAACAGG
TCGCCTGGCCCAAAGGACTGGCAACCTTAGTGCTGGGCTACGACTTCGAC
CATTCTCTGGGAAACGTGGTGTGGCCAGATGGGCTCCGAAATCTTTACCT
GGGTGACTCTTTTAGCCACTCCCTGGTTGGAGTGAAGTGGCCGTCTGGTA
TGAAGCACATCACCATCGGGGATTTTTTCGATCGCCCCCTTCACGGTGTA
GTTTGGCCGGCAGGGCTGGAAGAGCTGTCCTTCGGTGCAAGCTTCTGCCA
GAGACTCGAGGGCGTGGTATGGCCTGCGAAGGTAAAATCCGTTACCTTCG
GGCAGCTCATCGCCGAGTGGATCGAGTTACCTCTCGTCAAGCAACTCCAA
CTTGCGTCAATATCGATTTGCAACGACTGTCGCACGTCGACCTCTTTCCA
TGTCCGAGTGGTATCGAGGACCCCAAGGCGCCTGTGGATGGGAGCAACAA
GCCTAACCAGTCGCCGGCGTGGCGGTAAGGATATGGCAACGTCAAGGGTA
TCTCCCCTGCACACCAGCCGCCTGACATTTGGCCAATTTTATAATCGCCC
GGTAGAAAACGTGGTGTGGCCAGCGCAACTCCACCAGGTCACATTCGGGA
AATTATTCAATCAGTCCATCAGTTGTGTGAATTGGCCATCAAATCTGGTG
GATGTGCGATTCGGGTGCAAGTTTGACATGCCTATCACCAGGGTGACGTG
GCCTGCAGGGTTGAAGAAGATCAGATTTGGGTGCGGCTTCGATCAGGACT
TGGAGGGTGTATCGTGGCCCCGTGGTCTTCAGGAAATCAAACTCGGGGGT
AGATTTGATAAACCAATATGTGGGGTGGTATGGCCGAGAGATTTGAAGGT
TCTGGATCTGGGGTGGGCCTTCAATCAGCCAGTGGAGAATGTAGTATTTC
CGGAGGGCCTAAGGGAAATGTTTTTCAGCGATCTGTTTGATCAGCCAGTC
GAGGCCGCAGTATTTCCCCAGAGCTTGGAACGCCTTTGCTTCGGGGTCAC
GTTCAATCAGGAGGTCCGGCGGATAAATTGGCCGGTCAACCTCAAGCACC
TGACCTTCGGGTGTCTTTTCAGTAAGAGCCTCGAGCACATCGATTTTCCT
GGAGGAATGGAGGAAATGGAGCTCGGGTGCAGTTGGAACCACCCGCTTGA
ACAGGTCGCCTGGCCCAAAGGACTGGCAACCTTAGTGCTGGGCTACGACT
TCGACCATTCTCTGGGAAACGTGGTGTGGCCAGATGGGCTCCGAAATCTT
TACCTGGGTGACTCTTTTAGCCACTCCCTGGTTGGAGTGAAGTGGCCGTC
TGGTATGAAGCACATCACCATCGGGGATTTTTTCGATCGCCCCCTTCACG
GTGTAGTTTGGCCGGCAGGGCTGGAAGAGCTGTCCTTCGGTGCAAGCTTC
TGCCAGAGACTCGAGGGCGTGGTATGGCCTGCGAAGGTAAAATCCGTTAC
CTTCGGGCAG
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