mRNA_D-dudresnayi_contig10079.115.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10079.115.1
Unique NamemRNA_D-dudresnayi_contig10079.115.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10079.115.1 vs. uniprot
Match: A0A6H5KYC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYC3_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.060e-61
Identity = 142/298 (47.65%), Postives = 166/298 (55.70%), Query Frame = 1 
Query:  139 PSPSPAKARHAQRRFRSLYHQAAKEYQGWCQGEEEAQRALGSAFHFLDRLRMLEPDQRQEGNENLGGLEHLPDCRTLLIRKHTVELERVMRLWRALVQQMKGQVSRVEESLVEAWQLHRAET----RKSQQSSPXXXXXXSLGRQSPPSAQLSTMPPRPVASGFSPGA---TVRTRNGPGG-------AGFREAPSPAVVEDEGQMAWRGAGSAHTME-------------LAATG------RGGAVA------------------------VVGPAEYLQWLGDMSSMLVHEQWRKE 861
            PSPSPAKAR AQRR+RSLYHQAAKEY  W +GE ++QRALGSAFH +DRL++ EPDQ+  G+ NLGGLE LP CR LLI KHT ELERVMRLWRALV+QM+GQVSRVEE L EAWQLHR++     R+ +   P          QS       TMPP P  +  + G    +V     P G        G +E        +    +  GA  A + +             L ATG      R GAV                         VVGPAEYLQWLGD+SSMLVHEQWRKE
Sbjct:   32 PSPSPAKARQAQRRYRSLYHQAAKEYWAWRKGEGDSQRALGSAFHLIDRLQLFEPDQQTGGDINLGGLEKLPGCRELLIHKHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHRSDPARALRQPRHPPPPSPSPTLPTAQSRSPGNAFTMPPSPQHASAAVGVRSTSVSHATAPKGRQQRVDHVGAKEGDVDGSTGNPQHSSREGAEVAASSQGRLGDIGNGLQAGLPATGGMKDGDRAGAVVSEIPEETTRAMATGEDRAGGVTTVVVGPAEYLQWLGDLSSMLVHEQWRKE 329
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BLAST of mRNA_D-dudresnayi_contig10079.115.1 vs. uniprot
Match: D7FPK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK5_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 2.260e-61
Identity = 147/318 (46.23%), Postives = 175/318 (55.03%), Query Frame = 1 
Query:  106 WTSSASKGPG----GPSPSPAKARHAQRRFRSLYHQAAKEYQGWCQGEEEAQRALGSAFHFLDRLRMLEPDQRQEGNENLGGLEHLPDCRTLLIRKHTVELERVMRLWRALVQQMKGQVSRVEESLVEAWQLHRAET-------RKSQQSSPXXXXXXSLGRQSPPSAQLSTMPPRPVASGFSPGATVRTRN---GPGG-------AGFREAPSPAVVEDEGQMAWRGA-------------GSAHTMELAATG------RGGAVA------------------------VVGPAEYLQWLGDMSSMLVHEQWRKEVR 867
            W+ S  +G G     PSPSPAKAR AQRR+RSLYHQAAKEY  W +GE ++QRALGS FH LDRL++ EPDQ+  G+ NLGGLE LP CR LLI KHT ELERVMRLWRALV+QM+GQVSRVEE L E WQLHR++        R     SP      +L R SP +A   T+PP P  +G + G    + +    P G        G +E        +    +  GA             G+     L ATG      R GAV                          VGPAE+LQWLGD+SSMLVHEQWRKEV+
Sbjct:   17 WSGSKVRGGGVLGRQPSPSPAKARQAQRRYRSLYHQAAKEYWAWREGENDSQRALGSVFHLLDRLQLFEPDQQTGGDVNLGGLEKLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAEGWQLHRSDPARALLQPRHPAPPSPSPPLPTALSR-SPGNA--FTIPPSPQHAGAAVGVRSTSASHTTAPEGRLQRVHHVGAKEGDIDGSTGNPRHSSLEGAEVAASPQGRLGDIGNGLQAGLPATGGMKEGDRAGAVVSEIPGETARAMAAGGDRAGGVTTMTVGPAEHLQWLGDLSSMLVHEQWRKEVQ 331
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10079.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYC3_9PHAE1.060e-6147.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPK5_ECTSI2.260e-6146.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10079contigD-dudresnayi_contig10079:8537..10561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_000930.1
Exons4
Model size867
Cds size867
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10079.115.1prot_D-dudresnayi_contig10079.115.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10079 8537..10561 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.587375-CDS-D-dudresnayi_contig10079:8536..87491622927508.587375-CDS-D-dudresnayi_contig10079:8536..8749Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10079 8537..8749 +
1690556784.0400758-CDS-D-dudresnayi_contig10079:8536..87491690556784.0400758-CDS-D-dudresnayi_contig10079:8536..8749Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10079 8537..8749 +
1622927508.603749-CDS-D-dudresnayi_contig10079:8968..90701622927508.603749-CDS-D-dudresnayi_contig10079:8968..9070Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10079 8969..9070 +
1690556784.0497866-CDS-D-dudresnayi_contig10079:8968..90701690556784.0497866-CDS-D-dudresnayi_contig10079:8968..9070Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10079 8969..9070 +
1622927508.6211677-CDS-D-dudresnayi_contig10079:9636..97681622927508.6211677-CDS-D-dudresnayi_contig10079:9636..9768Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10079 9637..9768 +
1690556784.0603464-CDS-D-dudresnayi_contig10079:9636..97681690556784.0603464-CDS-D-dudresnayi_contig10079:9636..9768Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10079 9637..9768 +
1622927508.632038-CDS-D-dudresnayi_contig10079:10141..105611622927508.632038-CDS-D-dudresnayi_contig10079:10141..10561Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10079 10142..10561 +
1690556784.0676467-CDS-D-dudresnayi_contig10079:10141..105611690556784.0676467-CDS-D-dudresnayi_contig10079:10141..10561Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10079 10142..10561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10079.115.1

>prot_D-dudresnayi_contig10079.115.1 ID=prot_D-dudresnayi_contig10079.115.1|Name=mRNA_D-dudresnayi_contig10079.115.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=289bp
CCSCVAVIPGYSLCAMATLSPYETRGEGKMYGDEGWTSSASKGPGGPSPS
PAKARHAQRRFRSLYHQAAKEYQGWCQGEEEAQRALGSAFHFLDRLRMLE
PDQRQEGNENLGGLEHLPDCRTLLIRKHTVELERVMRLWRALVQQMKGQV
SRVEESLVEAWQLHRAETRKSQQSSPSPPPPPSLGRQSPPSAQLSTMPPR
PVASGFSPGATVRTRNGPGGAGFREAPSPAVVEDEGQMAWRGAGSAHTME
LAATGRGGAVAVVGPAEYLQWLGDMSSMLVHEQWRKEVR
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mRNA from alignment at D-dudresnayi_contig10079:8537..10561+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10079.115.1 ID=mRNA_D-dudresnayi_contig10079.115.1|Name=mRNA_D-dudresnayi_contig10079.115.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2025bp|location=Sequence derived from alignment at D-dudresnayi_contig10079:8537..10561+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGCTGTAGTTGCGTAGCTGTAATCCCTGGCTACTCCTTGTGTGCAATGGC
CACTCTTAGTCCGTACGAGACACGGGGAGAAGGAAAGATGTACGGCGATG
AAGGATGGACGTCGTCAGCTTCCAAGGGCCCAGGAGGACCTAGTCCGAGC
CCGGCAAAGGCTCGACACGCACAGCGTCGATTTCGATCTCTCTATCACCA
GGCTGCCAAGGAGGTACCACCAGAGAGGAGAACAACCACGTAGCTGCGTC
GTTGCTGCTGTGATTCGTAGTGCAGCACTGAAAACACTGCGTTAACTCGG
GTCTTGGTAAGCAAACATACGACTGCGTTACGGTCGATTTGGAGCTGCCC
GCAAGCCTATAAAAGTCCAAAGTCCAAAGTCCAAACTCCCTTTTTGCGCC
CATGCGTGCATGATGCGGCGCAATAACGACAGTACCAGGGTTGGTGTCAA
GGAGAGGAGGAAGCTCAACGAGCGCTAGGATCGGCGTTCCATTTCCTGGA
CCGCCTTCGGATGCTCGAGCCTGACCAGCGGCAGGTATGTTTCTGTTGAC
CATTCGAAACAAAGCAGCTCTCACGATGTACAGTTGCTAGGTGTGCTCGT
TTTGGCGGTCGAATTTCCACATACCGCATGATACGACTTACAGTAATACT
CGAAGTACTATTATAGTCTGTTGGGTGTCTACTCAGTACTCAGTACTACA
GTCAGTAGTAGTAGTACTGGTACTATAATACGAGTATTATTGTTTACTCT
GTACTTCCAGCCTCGAACCCATGACTTTCACGAGCAGAGGAGATGTCTGG
TGGTATAATAGGTCGTCTGTGTGCTGAAGGAGCACCAGGAGATCAGGCAC
GGCAAGCGAGACTCCATGCTACGGTCAGCAACGGATTGCTTGTGCGTTTC
GCGTATTAAATAAAAAGTAAGGAAGCGTTGGTGCCATAGTCACAGCACAC
TATGATAGTCTTGCGCTCGTCTTCCCGTGGTAACGTGTGTTCGCATTCGA
ACCAGGAGTGTGCTCCAGAACCTACTCCCCAATCGAGTTGTCAGTAAGTG
TATCTCTTTGACAGTTTAACGTGTGGCTTACAATTTATGATCATTATTAG
GAGGGCAACGAAAACCTCGGCGGCCTGGAACACCTTCCGGATTGTCGGAC
TCTCTTGATCCGCAAGCACACCGTGGAGCTGGAGCGGGTGATGCGGCTCT
GGCGTGCCCTTGTTCAGCAGATGAAGGGGCAGGTGACCCGCAAGACATTT
TATATAGTCGGTGTAACTCAAACGTGTGTCTTGGGAGTCCCCGTACTTTT
CCCACGAAATACGTTGCCACGGTATCCACCATATGCTCATGTTTTTCGGC
GGGGTTTTGTCCAGGTAAAAGTATCCCATTTGTTCTGGTTGACCGGCAAG
GGTTCGGGTGCGCGTGTGCCACCGCAACACACGAGTATGACTTCAATTTT
CCGATGAACTTGTGGAGAATACGGCAATCTTGCCACAGTCGATCCACACA
CTTGTGCACCCTTCCACACGATACGGTACCTCCTTACAGCTCGCGCCCCG
AGCGTTACCCAAAATATTCTCTACCGATATTGGCGTATCGGTGAATATAC
CCCAGGTGTCTCGCGTGGAGGAGTCTCTCGTCGAAGCCTGGCAGCTGCAC
CGCGCCGAGACTCGAAAAAGTCAGCAATCCTCACCATCGCCGCCACCACC
ACCTTCACTAGGACGGCAATCACCCCCAAGCGCTCAGCTCAGCACAATGC
CTCCTCGCCCCGTTGCCTCTGGCTTTTCTCCGGGTGCCACCGTGCGCACG
AGGAATGGCCCGGGAGGTGCTGGATTCCGGGAGGCGCCCTCCCCAGCTGT
GGTTGAGGACGAAGGCCAGATGGCATGGCGGGGGGCAGGAAGCGCTCACA
CGATGGAGTTGGCGGCGACCGGAAGAGGAGGGGCGGTAGCGGTGGTGGGA
CCAGCGGAGTACCTGCAGTGGCTTGGAGATATGTCCAGCATGTTGGTTCA
TGAGCAATGGCGGAAGGAGGTGCGT
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10079:8537..10561+

>mRNA_D-dudresnayi_contig10079.115.1 ID=mRNA_D-dudresnayi_contig10079.115.1|Name=mRNA_D-dudresnayi_contig10079.115.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at D-dudresnayi_contig10079:8537..10561+ (Desmarestia dudresnayi DdudBR16 monoicous)
TGCTGTAGTTGCGTAGCTGTAATCCCTGGCTACTCCTTGTGTGCAATGGC
CACTCTTAGTCCGTACGAGACACGGGGAGAAGGAAAGATGTACGGCGATG
AAGGATGGACGTCGTCAGCTTCCAAGGGCCCAGGAGGACCTAGTCCGAGC
CCGGCAAAGGCTCGACACGCACAGCGTCGATTTCGATCTCTCTATCACCA
GGCTGCCAAGGAGTGCTGTAGTTGCGTAGCTGTAATCCCTGGCTACTCCT
TGTGTGCAATGGCCACTCTTAGTCCGTACGAGACACGGGGAGAAGGAAAG
ATGTACGGCGATGAAGGATGGACGTCGTCAGCTTCCAAGGGCCCAGGAGG
ACCTAGTCCGAGCCCGGCAAAGGCTCGACACGCACAGCGTCGATTTCGAT
CTCTCTATCACCAGGCTGCCAAGGAGTACCAGGGTTGGTGTCAAGGAGAG
GAGGAAGCTCAACGAGCGCTAGGATCGGCGTTCCATTTCCTGGACCGCCT
TCGGATGCTCGAGCCTGACCAGCGGCAGTACCAGGGTTGGTGTCAAGGAG
AGGAGGAAGCTCAACGAGCGCTAGGATCGGCGTTCCATTTCCTGGACCGC
CTTCGGATGCTCGAGCCTGACCAGCGGCAGGAGGGCAACGAAAACCTCGG
CGGCCTGGAACACCTTCCGGATTGTCGGACTCTCTTGATCCGCAAGCACA
CCGTGGAGCTGGAGCGGGTGATGCGGCTCTGGCGTGCCCTTGTTCAGCAG
ATGAAGGGGCAGGAGGGCAACGAAAACCTCGGCGGCCTGGAACACCTTCC
GGATTGTCGGACTCTCTTGATCCGCAAGCACACCGTGGAGCTGGAGCGGG
TGATGCGGCTCTGGCGTGCCCTTGTTCAGCAGATGAAGGGGCAGGTGTCT
CGCGTGGAGGAGTCTCTCGTCGAAGCCTGGCAGCTGCACCGCGCCGAGAC
TCGAAAAAGTCAGCAATCCTCACCATCGCCGCCACCACCACCTTCACTAG
GACGGCAATCACCCCCAAGCGCTCAGCTCAGCACAATGCCTCCTCGCCCC
GTTGCCTCTGGCTTTTCTCCGGGTGCCACCGTGCGCACGAGGAATGGCCC
GGGAGGTGCTGGATTCCGGGAGGCGCCCTCCCCAGCTGTGGTTGAGGACG
AAGGCCAGATGGCATGGCGGGGGGCAGGAAGCGCTCACACGATGGAGTTG
GCGGCGACCGGAAGAGGAGGGGCGGTAGCGGTGGTGGGACCAGCGGAGTA
CCTGCAGTGGCTTGGAGATATGTCCAGCATGTTGGTTCATGAGCAATGGC
GGAAGGAGGTGCGTGTGTCTCGCGTGGAGGAGTCTCTCGTCGAAGCCTGG
CAGCTGCACCGCGCCGAGACTCGAAAAAGTCAGCAATCCTCACCATCGCC
GCCACCACCACCTTCACTAGGACGGCAATCACCCCCAAGCGCTCAGCTCA
GCACAATGCCTCCTCGCCCCGTTGCCTCTGGCTTTTCTCCGGGTGCCACC
GTGCGCACGAGGAATGGCCCGGGAGGTGCTGGATTCCGGGAGGCGCCCTC
CCCAGCTGTGGTTGAGGACGAAGGCCAGATGGCATGGCGGGGGGCAGGAA
GCGCTCACACGATGGAGTTGGCGGCGACCGGAAGAGGAGGGGCGGTAGCG
GTGGTGGGACCAGCGGAGTACCTGCAGTGGCTTGGAGATATGTCCAGCAT
GTTGGTTCATGAGCAATGGCGGAAGGAGGTGCGT
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