mRNA_D-dudresnayi_contig10063.100.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10063.100.1
Unique NamemRNA_D-dudresnayi_contig10063.100.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10063.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10063contigD-dudresnayi_contig10063:2898..3349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size452
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927507.1025915-CDS-D-dudresnayi_contig10063:2897..32421622927507.1025915-CDS-D-dudresnayi_contig10063:2897..3242Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10063 2898..3242 +
1690556783.3518722-CDS-D-dudresnayi_contig10063:2897..32421690556783.3518722-CDS-D-dudresnayi_contig10063:2897..3242Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10063 2898..3242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927507.1143913-UTR-D-dudresnayi_contig10063:3242..33491622927507.1143913-UTR-D-dudresnayi_contig10063:3242..3349Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10063 3243..3349 +
1690556783.3594868-UTR-D-dudresnayi_contig10063:3242..33491690556783.3594868-UTR-D-dudresnayi_contig10063:3242..3349Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10063 3243..3349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10063.100.1prot_D-dudresnayi_contig10063.100.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10063 2898..3242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10063.100.1

>prot_D-dudresnayi_contig10063.100.1 ID=prot_D-dudresnayi_contig10063.100.1|Name=mRNA_D-dudresnayi_contig10063.100.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=115bp
INTISTQKRKENTREWKICAVLDDVLYAHLNGLNVNVNTAWPVNDSQPCI
CRYRQYKPLTAILQYHRRRQSRTTTYETRRTYAIISYAVARGVYTTGRES
EYHRPNTKYQIHQP*
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mRNA from alignment at D-dudresnayi_contig10063:2898..3349+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10063.100.1 ID=mRNA_D-dudresnayi_contig10063.100.1|Name=mRNA_D-dudresnayi_contig10063.100.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=452bp|location=Sequence derived from alignment at D-dudresnayi_contig10063:2898..3349+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATTAATACCATTAGCACACAAAAAAGAAAGGAAAATACTAGGGAATGGAA
AATTTGCGCCGTTTTAGATGACGTATTGTATGCTCATTTAAATGGCCTCA
ATGTAAATGTCAATACGGCGTGGCCGGTAAATGACTCCCAACCATGTATT
TGCCGTTACCGGCAATATAAACCGTTGACGGCTATACTACAGTACCATCG
TCGCAGACAGAGCAGAACAACAACGTACGAGACGAGACGTACGTATGCTA
TCATATCGTATGCTGTAGCACGGGGCGTGTACACCACAGGCAGGGAGTCA
GAGTACCATCGACCAAATACAAAATACCAAATACATCAGCCGTGACGCTC
CTTACGTCAACTTTTCTGTAATCTCGACAATGAGTACTGTAACGTGAAAT
GAGTTGCTCCAACAAGATTTGATTTAGTACCAAATTGTACGGAGATGTGA
AG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10063:2898..3349+

>mRNA_D-dudresnayi_contig10063.100.1 ID=mRNA_D-dudresnayi_contig10063.100.1|Name=mRNA_D-dudresnayi_contig10063.100.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at D-dudresnayi_contig10063:2898..3349+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATTAATACCATTAGCACACAAAAAAGAAAGGAAAATACTAGGGAATGGAA
AATTTGCGCCGTTTTAGATGACGTATTGTATGCTCATTTAAATGGCCTCA
ATGTAAATGTCAATACGGCGTGGCCGGTAAATGACTCCCAACCATGTATT
TGCCGTTACCGGCAATATAAACCGTTGACGGCTATACTACAGTACCATCG
TCGCAGACAGAGCAGAACAACAACGTACGAGACGAGACGTACGTATGCTA
TCATATCGTATGCTGTAGCACGGGGCGTGTACACCACAGGCAGGGAGTCA
GAGTACCATCGACCAAATACAAAATACCAAATACATCAGCCGTGAATTAA
TACCATTAGCACACAAAAAAGAAAGGAAAATACTAGGGAATGGAAAATTT
GCGCCGTTTTAGATGACGTATTGTATGCTCATTTAAATGGCCTCAATGTA
AATGTCAATACGGCGTGGCCGGTAAATGACTCCCAACCATGTATTTGCCG
TTACCGGCAATATAAACCGTTGACGGCTATACTACAGTACCATCGTCGCA
GACAGAGCAGAACAACAACGTACGAGACGAGACGTACGTATGCTATCATA
TCGTATGCTGTAGCACGGGGCGTGTACACCACAGGCAGGGAGTCAGAGTA
CCATCGACCAAATACAAAATACCAAATACATCAGCCGTGA
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