mRNA_D-dudresnayi_contig10046.83.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10046.83.1
Unique NamemRNA_D-dudresnayi_contig10046.83.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10046.83.1 vs. uniprot
Match: A0A7S3M913_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M913_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.510e-47
Identity = 95/200 (47.50%), Postives = 131/200 (65.50%), Query Frame = 1 
Query:  286 SIISTETLQLVLEGSTAVSGLQGTALLDAWMELLVNSKAEIVSALLQSVAFILSREDAKFLTGT------------------------------ESGERDHVVALKRQLVSRIGQARRTTTVAFLVKLATQPVEATRYAAINLMRALADQQSGWGLQLLFAHAQAATPDENFYLYLQERLTEYCKEGKDWKFSLITSVWQ 795
            ++IS  TLQLV+EG+   SG+    +L AWM LL NSK E++ A+LQSVA +L + D  ++T +                              E G+R+ VV +K++L+  IG+A+RT T+++L+KLA QP+EATR+ A+NL+RA+A Q SGWGLQ+LFAH Q A+ D NFY Y+ ERLTEYCKEGKD KF+LI +V Q
Sbjct:    1 AVISLTTLQLVVEGTH--SGIAPGQMLSAWMGLLTNSKVEMIGAVLQSVAVVLDQTDEHYVTASHPHPTPFVTDQASTDAKMEVGHHTDHGLLPELGKREVVVHIKKRLLGAIGEAKRTNTISYLMKLALQPIEATRFPAVNLLRAIAAQPSGWGLQMLFAH-QGASIDSNFYEYVIERLTEYCKEGKDHKFALIQAVAQ 197
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BLAST of mRNA_D-dudresnayi_contig10046.83.1 vs. uniprot
Match: A0A5D6Y4Z7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4Z7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.660e-14
Identity = 71/246 (28.86%), Postives = 115/246 (46.75%), Query Frame = 1 
Query:   70 QLPLVANPDSIIRTESMRVLGTIFTKAADRKFDILRKMGMNIVSHFLRTVKKHFEEGSEEERLAGMGALADFSIISTETLQLVLEGSTAVSGLQGTALLDAWMELLVNSKAEIVSALLQSVAFILSREDAKFLTGTESGER-----DHVVALKRQLVSRIGQ-ARRTTTVAFLVKLATQPVEATRYAAINLMRALADQQSGWGLQLLFAHAQAATPDENFYLYLQERLTEYCKEGKDWKFSLITSV 789
            Q  L    D  +   ++R++G +   AA             +   FL T+++  E     E++A M ALA F   S   L L++         Q T L  AW+EL  +SK E+ +    ++A +L  E  +    T + ER       V AL  +L + +G   R   TV FL+++  QP E  R A   L+RA+A Q SGWG+++L ++            +L +R TE  KE ++WKF++  ++
Sbjct:  258 QALLAMADDPFVGGSAIRLVGEMSATAAKLSVTSWNWSDPVLSKAFLETIERKIESAEPLEQIAAMDALAAFGSSSENELHLLV---------QHTRLCRAWLELGASSKLEVKANCFHALARVLG-EPTRL---TRAAERVPEAAAGVWALNERLFNSLGPLCRGQATVQFLMEILRQPFEEIRSAVFVLLRAVAAQNSGWGVRVLLSYGGLVE-------FLLDRATEPTKETREWKFAVADAL 483
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10046.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3M913_9STRA2.510e-4747.50Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5D6Y4Z7_9STRA3.660e-1428.86Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10046contigD-dudresnayi_contig10046:7468..8575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog65071.PYU1_T005254
Preferred namePSMD5
KEGG koko:K06692
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008540,GO:0009987,GO:0016043,GO:0016579,GO:0019538,GO:0022607,GO:0022624,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0065003,GO:0070013,GO:0070646,GO:0070647,GO:0070682,GO:0071704,GO:0071840,GO:1901564,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.Proteasome 26S non-ATPase subunit 5. Source PGD
EggNOG OGs1MFZC@121069,KOG4413@1,KOG4413@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051
Hectar predicted targeting categorysignal peptide
Exons3
Model size809
Cds size807
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10046.83.1prot_D-dudresnayi_contig10046.83.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10046 7468..8575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.3839848-CDS-D-dudresnayi_contig10046:7467..77291622927505.3839848-CDS-D-dudresnayi_contig10046:7467..7729Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10046 7468..7729 +
1690556782.2394695-CDS-D-dudresnayi_contig10046:7467..77291690556782.2394695-CDS-D-dudresnayi_contig10046:7467..7729Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10046 7468..7729 +
1622927505.3944285-CDS-D-dudresnayi_contig10046:7845..80551622927505.3944285-CDS-D-dudresnayi_contig10046:7845..8055Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10046 7846..8055 +
1690556782.266022-CDS-D-dudresnayi_contig10046:7845..80551690556782.266022-CDS-D-dudresnayi_contig10046:7845..8055Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10046 7846..8055 +
1622927505.404843-CDS-D-dudresnayi_contig10046:8240..85751622927505.404843-CDS-D-dudresnayi_contig10046:8240..8575Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10046 8241..8575 +
1690556782.274276-CDS-D-dudresnayi_contig10046:8240..85751690556782.274276-CDS-D-dudresnayi_contig10046:8240..8575Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10046 8241..8575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10046.83.1

>prot_D-dudresnayi_contig10046.83.1 ID=prot_D-dudresnayi_contig10046.83.1|Name=mRNA_D-dudresnayi_contig10046.83.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=269bp
SQGVLAWLVSTASGEALSPAAVHQLPLVANPDSIIRTESMRVLGTIFTKA
ADRKFDILRKMGMNIVSHFLRTVKKHFEEGSEEERLAGMGALADFSIIST
ETLQLVLEGSTAVSGLQGTALLDAWMELLVNSKAEIVSALLQSVAFILSR
EDAKFLTGTESGERDHVVALKRQLVSRIGQARRTTTVAFLVKLATQPVEA
TRYAAINLMRALADQQSGWGLQLLFAHAQAATPDENFYLYLQERLTEYCK
EGKDWKFSLITSVWQCSAK
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mRNA from alignment at D-dudresnayi_contig10046:7468..8575+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10046.83.1 ID=mRNA_D-dudresnayi_contig10046.83.1|Name=mRNA_D-dudresnayi_contig10046.83.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1108bp|location=Sequence derived from alignment at D-dudresnayi_contig10046:7468..8575+ (Desmarestia dudresnayi DdudBR16 monoicous)
TCTCAAGGTGTTCTTGCATGGTTAGTGTCTACAGCCAGTGGTGAAGCATT
GTCACCTGCAGCTGTGCACCAACTACCACTCGTCGCAAATCCAGATTCTA
TAATTCGTACAGAATCAATGCGTGTACTTGGAACAATCTTTACGAAAGCA
GCAGATCGTAAATTTGATATCTTGCGTAAAATGGGTATGAATATTGTTTC
TCATTTTCTTCGCACAGTGAAGAAGCACTTTGAAGAAGGTTCCGAAGAAG
AACGTCTTGCAGGTACAATATATTTATCTTAATGTTACTTCTTTGAACAT
TATATTTAGCTCTCTTACACTCACTTTGATTATTGTATTAACTTACTTAT
TTGTATACCGTATCTTGGTTAACCATAGGTATGGGTGCGCTGGCAGATTT
CTCGATCATCTCAACCGAGACCCTGCAGCTGGTCCTGGAGGGCAGTACTG
CGGTGTCTGGGCTACAAGGGACTGCCCTCCTGGATGCCTGGATGGAACTG
CTCGTCAACTCTAAAGCTGAGATAGTGTCTGCACTGCTGCAGAGTGTGGC
TTTTATTCTCTCTCGTGAAGATGCCAAGTTCCTCACTGGTGAGTGACCAT
ACCTGCTGTACTGTATATGCATGTATATACATGAATATTCACTACTGTAT
TATCTAGGAGTATGATGTAGTAATACACTGTACTCTACTCTCTTATACTA
AGTTATACCCTATAATACACTCTTCAGTTAGCAGTTATATGATTATACTT
ACCATATGATGTTGTTGAAACAGGCACTGAGTCAGGTGAGCGCGACCACG
TGGTAGCTCTCAAGAGACAACTAGTGAGTCGCATCGGTCAAGCCCGCCGC
ACCACTACAGTAGCCTTCCTGGTTAAGCTCGCTACCCAGCCAGTAGAAGC
CACACGCTATGCAGCAATCAATCTCATGCGTGCCTTAGCTGATCAGCAGA
GTGGATGGGGTTTACAATTGCTATTCGCACATGCACAAGCTGCTACCCCA
GACGAGAATTTCTATCTGTATTTACAAGAACGTTTAACTGAATACTGTAA
AGAAGGAAAAGATTGGAAATTCTCTCTGATTACTTCAGTCTGGCAGTGTT
CAGCGAAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10046:7468..8575+

>mRNA_D-dudresnayi_contig10046.83.1 ID=mRNA_D-dudresnayi_contig10046.83.1|Name=mRNA_D-dudresnayi_contig10046.83.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at D-dudresnayi_contig10046:7468..8575+ (Desmarestia dudresnayi DdudBR16 monoicous)
TCTCAAGGTGTTCTTGCATGGTTAGTGTCTACAGCCAGTGGTGAAGCATT
GTCACCTGCAGCTGTGCACCAACTACCACTCGTCGCAAATCCAGATTCTA
TAATTCGTACAGAATCAATGCGTGTACTTGGAACAATCTTTACGAAAGCA
GCAGATCGTAAATTTGATATCTTGCGTAAAATGGGTATGAATATTGTTTC
TCATTTTCTTCGCACAGTGAAGAAGCACTTTGAAGAAGGTTCCGAAGAAG
AACGTCTTGCAGTCTCAAGGTGTTCTTGCATGGTTAGTGTCTACAGCCAG
TGGTGAAGCATTGTCACCTGCAGCTGTGCACCAACTACCACTCGTCGCAA
ATCCAGATTCTATAATTCGTACAGAATCAATGCGTGTACTTGGAACAATC
TTTACGAAAGCAGCAGATCGTAAATTTGATATCTTGCGTAAAATGGGTAT
GAATATTGTTTCTCATTTTCTTCGCACAGTGAAGAAGCACTTTGAAGAAG
GTTCCGAAGAAGAACGTCTTGCAGGTATGGGTGCGCTGGCAGATTTCTCG
ATCATCTCAACCGAGACCCTGCAGCTGGTCCTGGAGGGCAGTACTGCGGT
GTCTGGGCTACAAGGGACTGCCCTCCTGGATGCCTGGATGGAACTGCTCG
TCAACTCTAAAGCTGAGATAGTGTCTGCACTGCTGCAGAGTGTGGCTTTT
ATTCTCTCTCGTGAAGATGCCAAGTTCCTCACTGGTATGGGTGCGCTGGC
AGATTTCTCGATCATCTCAACCGAGACCCTGCAGCTGGTCCTGGAGGGCA
GTACTGCGGTGTCTGGGCTACAAGGGACTGCCCTCCTGGATGCCTGGATG
GAACTGCTCGTCAACTCTAAAGCTGAGATAGTGTCTGCACTGCTGCAGAG
TGTGGCTTTTATTCTCTCTCGTGAAGATGCCAAGTTCCTCACTGGCACTG
AGTCAGGTGAGCGCGACCACGTGGTAGCTCTCAAGAGACAACTAGTGAGT
CGCATCGGTCAAGCCCGCCGCACCACTACAGTAGCCTTCCTGGTTAAGCT
CGCTACCCAGCCAGTAGAAGCCACACGCTATGCAGCAATCAATCTCATGC
GTGCCTTAGCTGATCAGCAGAGTGGATGGGGTTTACAATTGCTATTCGCA
CATGCACAAGCTGCTACCCCAGACGAGAATTTCTATCTGTATTTACAAGA
ACGTTTAACTGAATACTGTAAAGAAGGAAAAGATTGGAAATTCTCTCTGA
TTACTTCAGTCTGGCAGTGTTCAGCGAAGGCACTGAGTCAGGTGAGCGCG
ACCACGTGGTAGCTCTCAAGAGACAACTAGTGAGTCGCATCGGTCAAGCC
CGCCGCACCACTACAGTAGCCTTCCTGGTTAAGCTCGCTACCCAGCCAGT
AGAAGCCACACGCTATGCAGCAATCAATCTCATGCGTGCCTTAGCTGATC
AGCAGAGTGGATGGGGTTTACAATTGCTATTCGCACATGCACAAGCTGCT
ACCCCAGACGAGAATTTCTATCTGTATTTACAAGAACGTTTAACTGAATA
CTGTAAAGAAGGAAAAGATTGGAAATTCTCTCTGATTACTTCAGTCTGGC
AGTGTTCAGCGAAG
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