mRNA_D-dudresnayi_contig10046.82.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10046.82.1
Unique NamemRNA_D-dudresnayi_contig10046.82.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10046.82.1 vs. uniprot
Match: A0A7S3HNM6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNM6_9STRA)

HSP 1 Score: 101 bits (252), Expect = 8.350e-24
Identity = 42/70 (60.00%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   85 NLTSTNGWERIES-KGTVIPCQRSLHAGAVWRDNFIVFGGYDGHHRVNDLYSFNFKSSSWNLLNNINAPS 291
            + T++ GW+ +E+ + + +PCQRSLHAGAVW+D F+VFGGYDGH RVNDLYSFNF  + W +L+ INAP+
Sbjct:   35 STTTSKGWQEVEADEDSTVPCQRSLHAGAVWKDCFVVFGGYDGHRRVNDLYSFNFTLNQWKMLSGINAPT 104          
BLAST of mRNA_D-dudresnayi_contig10046.82.1 vs. uniprot
Match: A0A482UH03_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UH03_9ARCH)

HSP 1 Score: 91.7 bits (226), Expect = 2.920e-21
Identity = 38/62 (61.29%), Postives = 52/62 (83.87%), Query Frame = 1
Query:  106 WERIESK-GTVIPCQRSLHAGAVWRDNFIVFGGYDGHHRVNDLYSFNFKSSSWNLLNNINAP 288
            WE IE++  +V+PCQRSLHAGAVW+D F++FGGYDG  RVNDLYS++F+ + W  L+++NAP
Sbjct:   80 WETIEARVDSVLPCQRSLHAGAVWKDCFVIFGGYDGSRRVNDLYSYSFRDNIWRQLSSVNAP 141          
BLAST of mRNA_D-dudresnayi_contig10046.82.1 vs. uniprot
Match: A0A7S3JNQ4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JNQ4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.560e-11
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1
Query:  139 PCQRSLHAGAVWRDNFIVFGGYDGHHRVNDLYSFNFKSSSWNLL 270
            PCQRSLH  AVWRD  I+FGGYDG +RVNDL+ ++F    W+L+
Sbjct:   12 PCQRSLHVAAVWRDKLIIFGGYDGSNRVNDLWLYSFTQEEWSLV 55          
BLAST of mRNA_D-dudresnayi_contig10046.82.1 vs. uniprot
Match: A0A7S4A3I8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3I8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.130e-10
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1
Query:  106 WERIESKGTVI----PCQRSLHAGAVWRDNFIVFGGYDGHHRVNDLYSFNFKSSSWNLL 270
            W R+++         PCQRSLH  AVWRD  + FGGYDG HRVND + F+F   +W+ +
Sbjct:   38 WLRVQTDANAPDGAGPCQRSLHVAAVWRDRMLCFGGYDGSHRVNDCWEFDFGKRAWSTV 96          
BLAST of mRNA_D-dudresnayi_contig10046.82.1 vs. uniprot
Match: A0A7S2SJA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJA3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.380e-10
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1
Query:  106 WERIESKGTV---IPCQRSLHAGAVWRDNFIVFGGYDGHHRVNDLYSFNFKSSSWNLL 270
            W  +E+       +PCQRSLHA AV+ D  +VFGGYDG +RVND Y F F +  W ++
Sbjct:   60 WTNVETSPETRHTLPCQRSLHATAVFEDKMLVFGGYDGSNRVNDFYMFCFTTKDWRMI 117          
BLAST of mRNA_D-dudresnayi_contig10046.82.1 vs. uniprot
Match: A0DE28_PARTE (BTB domain-containing protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DE28_PARTE)

HSP 1 Score: 59.3 bits (142), Expect = 7.610e-8
Identity = 27/78 (34.62%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   70 KEYGGNL----TSTNGWERIESKGTVIPCQRSLHAGAVWRDNFIVFGGYDGHHRVNDLYSFNFKSSSWNLLNNINAPS 291
            K+Y  +L    T TN W+ +++     P  R+ H+ AVW++  ++FGG+DG  R+NDL+ ++  ++ W  L  I +PS
Sbjct:  155 KDYLNDLHSFNTKTNMWKLVQTAENQRPPPRANHSSAVWQNKLLIFGGWDGSKRLNDLHCYDVTTNKWCELKPIQSPS 232          
BLAST of mRNA_D-dudresnayi_contig10046.82.1 vs. uniprot
Match: A0A7S4US31_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4US31_9DINO)

HSP 1 Score: 51.6 bits (122), Expect = 1.660e-5
Identity = 21/67 (31.34%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   94 STNGWERIESKGTVIPCQRSLHAGAVWRDNFIVFGGYDGHHRVNDLYSFNFKSSSWNLLNNINAPSP 294
            +T+ W  +++ G   P +R+ H+  ++RD+ +VFGG+DGH+R NDL   + +   W+ ++++ +  P
Sbjct:   10 ATSSWGSVQTLGEA-PQKRTDHSVVLFRDSMLVFGGFDGHNRFNDLRDLHLRERRWSHISHVRSLVP 75          
BLAST of mRNA_D-dudresnayi_contig10046.82.1 vs. uniprot
Match: A0A2R5GPF9_9STRA (Kelch domain-containing protein 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GPF9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 4.120e-5
Identity = 20/52 (38.46%), Postives = 31/52 (59.62%), Query Frame = 1
Query:  106 WERIESKGTVIPCQRSLHAGAVWRDNFIVFGGYDGHHRVNDLYSFNFKSSSW 261
            W  +++ G   P  R  H G V  D  ++FGGYDG  R ND+++F+ + +SW
Sbjct:  175 WHAMDTAGGEPPSPRDRHTGVVVEDALLIFGGYDGMVRCNDIHAFDLRHNSW 226          
BLAST of mRNA_D-dudresnayi_contig10046.82.1 vs. uniprot
Match: A0A078B2X6_STYLE (Kelch repeat n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B2X6_STYLE)

HSP 1 Score: 50.8 bits (120), Expect = 7.430e-5
Identity = 22/74 (29.73%), Postives = 41/74 (55.41%), Query Frame = 1
Query:   76 YGGNL-TSTNGWERIESKGTVIPCQRSLHAGAVWRDNFIVFGGYDGHHRVNDLYSFNFKSSSWNLLNNINAPSP 294
            Y  NL T++  W++I   GT +P  R  H   ++  +  +FGG++GH  ++D+Y ++F S+ W  +  +    P
Sbjct:  521 YKCNLRTASFKWKKINGDGT-LPLNRFGHTAVIYEHSMFIFGGWNGHDTLDDIYQYSFSSNYWYEIKKVKGTRP 593          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10046.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S3HNM6_9STRA8.350e-2460.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482UH03_9ARCH2.920e-2161.29Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3JNQ4_9STRA4.560e-1161.36Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4A3I8_9STRA1.130e-1047.46Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2SJA3_9STRA5.380e-1048.28Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0DE28_PARTE7.610e-834.62BTB domain-containing protein n=2 Tax=Paramecium t... [more]
A0A7S4US31_9DINO1.660e-531.34Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A2R5GPF9_9STRA4.120e-538.46Kelch domain-containing protein 3 n=1 Tax=Hondaea ... [more]
A0A078B2X6_STYLE7.430e-529.73Kelch repeat n=1 Tax=Stylonychia lemnae TaxID=5949... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10046contigD-dudresnayi_contig10046:3151..3507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog35128.Thaps5743
KEGG koko:K15450,ko:K20285
EggNOG free text desc.Kelch motif
EggNOG OGs2XEKX@2836,KOG0379@1,KOG0379@2759
EC2.1.1.282
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size359
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.3388867-UTR-D-dudresnayi_contig10046:3150..31621622927505.3388867-UTR-D-dudresnayi_contig10046:3150..3162Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10046 3151..3162 +
1690556782.203499-UTR-D-dudresnayi_contig10046:3150..31621690556782.203499-UTR-D-dudresnayi_contig10046:3150..3162Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10046 3151..3162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.3515887-CDS-D-dudresnayi_contig10046:3162..35071622927505.3515887-CDS-D-dudresnayi_contig10046:3162..3507Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10046 3163..3507 +
1690556782.2145815-CDS-D-dudresnayi_contig10046:3162..35071690556782.2145815-CDS-D-dudresnayi_contig10046:3162..3507Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10046 3163..3507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10046.82.1prot_D-dudresnayi_contig10046.82.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10046 3163..3507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10046.82.1

>prot_D-dudresnayi_contig10046.82.1 ID=prot_D-dudresnayi_contig10046.82.1|Name=mRNA_D-dudresnayi_contig10046.82.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=115bp
MDIPFPPPPPPSGADCLNKKEYGGNLTSTNGWERIESKGTVIPCQRSLHA
GAVWRDNFIVFGGYDGHHRVNDLYSFNFKSSSWNLLNNINAPSPRDRHVA
VVYENSLYIFGGFDG
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mRNA from alignment at D-dudresnayi_contig10046:3151..3507+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10046.82.1 ID=mRNA_D-dudresnayi_contig10046.82.1|Name=mRNA_D-dudresnayi_contig10046.82.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at D-dudresnayi_contig10046:3151..3507+ (Desmarestia dudresnayi DdudBR16 monoicous)
TTTATTTCTAAGATGGATATCCCTTTTCCTCCTCCCCCACCACCATCAGG AGCTGATTGTCTAAATAAGAAAGAATATGGTGGTAATTTAACATCTACAA ATGGTTGGGAAAGAATTGAATCAAAGGGAACAGTCATACCTTGTCAAAGA TCACTCCATGCTGGAGCAGTATGGCGTGATAATTTTATTGTATTTGGTGG ATATGATGGACATCATCGTGTTAATGATCTGTACTCATTCAACTTTAAAT CTTCGAGTTGGAATCTATTAAATAACATTAATGCCCCCTCACCTCGTGAT CGACACGTGGCAGTAGTTTATGAAAATTCTTTATATATATTCGGTGGTTT TGATGGG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10046:3151..3507+

>mRNA_D-dudresnayi_contig10046.82.1 ID=mRNA_D-dudresnayi_contig10046.82.1|Name=mRNA_D-dudresnayi_contig10046.82.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at D-dudresnayi_contig10046:3151..3507+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGGATATCCCTTTTCCTCCTCCCCCACCACCATCAGGAGCTGATTGTCT
AAATAAGAAAGAATATGGTGGTAATTTAACATCTACAAATGGTTGGGAAA
GAATTGAATCAAAGGGAACAGTCATACCTTGTCAAAGATCACTCCATGCT
GGAGCAGTATGGCGTGATAATTTTATTGTATTTGGTGGATATGATGGACA
TCATCGTGTTAATGATCTGTACTCATTCAACTTTAAATCTTCGAGTTGGA
ATCTATTAAATAACATTAATGCCCCCTCACCTCGTGATCGACACGTGGCA
GTAGTTTATGAAAATTCTTTATATATATTCGGTGGTTTTGATGGGATGGA
TATCCCTTTTCCTCCTCCCCCACCACCATCAGGAGCTGATTGTCTAAATA
AGAAAGAATATGGTGGTAATTTAACATCTACAAATGGTTGGGAAAGAATT
GAATCAAAGGGAACAGTCATACCTTGTCAAAGATCACTCCATGCTGGAGC
AGTATGGCGTGATAATTTTATTGTATTTGGTGGATATGATGGACATCATC
GTGTTAATGATCTGTACTCATTCAACTTTAAATCTTCGAGTTGGAATCTA
TTAAATAACATTAATGCCCCCTCACCTCGTGATCGACACGTGGCAGTAGT
TTATGAAAATTCTTTATATATATTCGGTGGTTTTGATGGG
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