mRNA_D-dudresnayi_contig10037.71.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10037.71.1
Unique NamemRNA_D-dudresnayi_contig10037.71.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
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BLAST of mRNA_D-dudresnayi_contig10037.71.1 vs. uniprot
Match: D8LD49_ECTSI (DNA polymerase epsilon subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD49_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 2.510e-87
Identity = 145/167 (86.83%), Postives = 156/167 (93.41%), Query Frame = 3 
Query:   24 MSTAQAVFRAFKLQGLGIRADAAKAVVRVVDHEEDVDGAVQAIIRATKARIERNELGSNVVDVDTVSAVVAGLSSREQDLTDSSTQTQSAFLRPRLYFDPVRNTLLLEDAGSRKRSMHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIDSSRREYIMLSPLDSLV 524
            MS+AQAVFRAFKLQGLG+RADAA+A+VRVV+ EE  D AVQAIIR+ KARIERNEL SNVVDVDTVSAVVA L+SREQDL DSSTQ Q+AF+RPRLYFDPVRNTLLLEDAG+RKRSMHGPAESKARMYRERFLMVRQRV RHDLFRPPII+SSRREYI LSPLDSLV
Sbjct:    1 MSSAQAVFRAFKLQGLGLRADAARAIVRVVEREEGADEAVQAIIRSVKARIERNELSSNVVDVDTVSAVVADLTSREQDLADSSTQMQNAFVRPRLYFDPVRNTLLLEDAGTRKRSMHGPAESKARMYRERFLMVRQRVQRHDLFRPPIIESSRREYIKLSPLDSLV 167
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BLAST of mRNA_D-dudresnayi_contig10037.71.1 vs. uniprot
Match: A0A835YQA3_9STRA (DNA polymerase epsilon subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA3_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.050e-31
Identity = 71/167 (42.51%), Postives = 106/167 (63.47%), Query Frame = 3 
Query:   24 MSTAQAVFRAFKLQGLGIRADAAKAVVRVVDHEEDVDGAVQAIIRATKARIERNELGSNVVDVDTVSAVVAGLSSREQDLTDSSTQTQSAFLRPRLYFDPVRNTLLLEDAGSRKRSMHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIDSSRREYIMLSPLDSLV 524
            M   + + +AF+LQGL +  +A KA++ V++ EED   A+ A+I A K +IER EL S V+D   V+AV   LS+ E DL  +S +  +AF   RL++DP+R +L  E    R   +H   E+K  M R+R L+++QR  RH+LFR P+I SSR++ I L+ LDSL+
Sbjct:    1 MGLMRQIAQAFRLQGLQLTGEAMKAIISVIESEEDSAAALGAVISAIKDKIERKELRSTVIDEAAVAAVAIDLSNTEDDLARASLKVLNAFEGARLWYDPLRKSLQWETQEQRTSVLHAGPEAKGEMLRDRLLLMQQRTQRHELFRAPVIASSRKDTIKLTSLDSLL 167
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BLAST of mRNA_D-dudresnayi_contig10037.71.1 vs. uniprot
Match: A0A4D9DAB7_9STRA (DNA polymerase II subunit 2 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAB7_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.980e-28
Identity = 70/163 (42.94%), Postives = 100/163 (61.35%), Query Frame = 3 
Query:   36 QAVFRAFKLQGLGIRADAAKAVVRVVDHEEDVDGAVQAIIRATKARIERNELGSNVVDVDTVSAVVAGLSSREQDLTDSSTQTQSAFLRPRLYFDPVRNTLLLEDAGSRKRSMHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIDSSRREYIMLSPLDSLV 524
            +A+FRAFKL+GL ++ADA  A+V V+ HEEDVDGA+ AI+ A K  +ER EL S +VD  T+  VV  L+  E DL   +     AF  P++ +D    +        ++R  +    S+ARM+RER+ +VRQRV RH+LF  PI+   R  Y+ L  +DSL+
Sbjct:   15 RAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYDHRSKSFSF--TFDKERPFNPDPGSRARMFRERYALVRQRVLRHELFVRPIMGHDRN-YLKLVTVDSLL 174
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BLAST of mRNA_D-dudresnayi_contig10037.71.1 vs. uniprot
Match: W7TY64_9STRA (Dna-directed dna polymerase epsilon 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TY64_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.270e-18
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 3 
Query:   36 QAVFRAFKLQGLGIRADAAKAVVRVVDHEEDVDGAVQAIIRATKARIERNELGSNVVDVDTVSAVVAGLSSREQDLTDSSTQTQSAFLRPRLYFD 320
            +A+FRAFKL+GL ++ADA  A+V V+ HEEDVDGA+ AI+ A K  +ER EL S +VD  T+  VV  L+  E DL   +     AF  P++ +D
Sbjct:   15 RAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYD 109
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BLAST of mRNA_D-dudresnayi_contig10037.71.1 vs. uniprot
Match: A0A1V9YX49_9STRA (DNA polymerase epsilon subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YX49_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.640e-16
Identity = 58/169 (34.32%), Postives = 97/169 (57.40%), Query Frame = 3 
Query:   24 MSTAQAVFRAFKLQGLGIRADAAKAVVRVVDHEEDVDGAVQAIIRATKARIERNELGSNVVDVDTVSAVVAGLSSREQDLTDSSTQTQSAFLRPRLYFDPVRNTLLLEDAGSRKRSMHGPAESKARMYRERFLMVRQRVHRHDLFRPPII--DSSRREYIMLSPLDSLV 524
            M+ A+ VFRAFKLQGL + ADA K ++R +D +  V   ++ +I A K  I+R++L ++VV  + + + +  L S   +    + Q  SA  +P+L ++ +  T   E    R R +H   E +  ++RERF  V +RV RH  F  P++   S +REY+ L+ ++SL+
Sbjct:    1 MAAAKQVFRAFKLQGLTLHADALKRLLREMDEQPSV--LLEDVIYAIKNSIDRSKLTNSVVTQEALESALDTLLSVSTENDYQAIQVFSALEQPKLRYESLSKTY--EVVADRGRRLHAAPEYRVNLFRERFAAVERRVRRHKTFSKPVMATTSLQREYLELTRIESLL 165
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BLAST of mRNA_D-dudresnayi_contig10037.71.1 vs. uniprot
Match: A0A7S0MZV0_9CHLO (DNA polymerase epsilon subunit n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MZV0_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 2.000e-13
Identity = 58/171 (33.92%), Postives = 90/171 (52.63%), Query Frame = 3 
Query:   24 MSTAQAVFRAFKLQGLGIRADAAKAVVRVVDHEE-DVDGAVQAIIRATKARIERNELGSNVVDVDTVSAVVAGL-SSREQDLTDSSTQTQSAFLRPRLYFDPVRNTLLLEDAGSRKRSMHGPAESKARMYRERFLMVRQRVHRHDLFRPPIID--SSRREYIMLSPLDSLV 524
            M   +AV   F+  GL +R D+ K V   VD +   V+ A + ++ A    +E+ EL S ++DV+TV  ++  L     QD  DS+T    AF  P+  +DP++         S K  M G A +K  +Y+ER +++R RV R+ LF  P  +  SSRREY  L+ +  L+
Sbjct:    3 MEVQKAVHAEFRRHGLSLRRDSVKLVAAYVDDQHVSVEDAAELMLNA----LEKQELKSTILDVETVEKLIGDLLEGVVQD--DSATHVIGAFDMPKFNYDPIKKAFYKV---STKPDMFGDANAKISLYQERLMILRNRVSRNKLFAKPSFELSSSRREYCELTSVQGLM 164
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BLAST of mRNA_D-dudresnayi_contig10037.71.1 vs. uniprot
Match: A0A8C9VIE7_SCLFO (DNA polymerase epsilon subunit n=9 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9VIE7_SCLFO)

HSP 1 Score: 74.3 bits (181), Expect = 2.400e-12
Identity = 45/149 (30.20%), Postives = 85/149 (57.05%), Query Frame = 3 
Query:   54 FKLQGLGIRADAAKAVVRVVDH--EEDVDGAVQAIIRATKARIERNELGSNVVDVDTVSAVVAGLSSREQDLTDSSTQTQSAFLRPRLYFDPVRNTLL-LEDAGSRKRSMHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIDSSRRE 491
            F+++GL +R +++K +V V+    E+++D A++ ++ A    +E+  L S+++++  V   V   S    + TD+      AF  PR  +   R   + L  +   + S+ G A  KA ++RER+ +++QR+HRH+LF PP+I S+  E
Sbjct:   17 FQMRGLTLRPESSKYLVEVLQSVSEQELDDAIERVLDA----VEKQPLSSSMIELSVVEIAVHECSQLNDETTDNVFNIIGAFDVPRFIYSTERKKFVPLAMSNHPRPSLCGTARDKAELFRERYTVLQQRIHRHELFTPPVIGSAPDE 161
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BLAST of mRNA_D-dudresnayi_contig10037.71.1 vs. uniprot
Match: A0A067C3B3_SAPPC (DNA polymerase epsilon subunit n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067C3B3_SAPPC)

HSP 1 Score: 73.9 bits (180), Expect = 3.180e-12
Identity = 51/166 (30.72%), Postives = 91/166 (54.82%), Query Frame = 3 
Query:   33 AQAVFRAFKLQGLGIRADAAKAVVRVVDHEEDVDGAVQAIIRATKARIERNELGSNVVDVDTVSAVVAGLSSREQDLTDSSTQTQSAFLRPRLYFDPVRNTLLLEDAGSRKRSMHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIDSSR--REYIMLSPLDSLV 524
            A+ VFRAFKLQGL + ADA K ++  ++ E  +   +  ++ A K  I+R++L ++VV ++ + + +  L S   +    S Q   AF  P L ++ +  T  +     R R +H     +  ++R RF  + +RV RH  F  P++ S++  REY+ L+ ++SL+
Sbjct:    5 AKQVFRAFKLQGLTLHADALKRLLHEMEMEPTL--GLDDVLFAIKNSIDRSKLINSVVTIEALESALDTLLSVSAENDYQSIQVFDAFEMPSLQYEAMTKTYSV--GLDRHRRLHASPNYRVNLFRNRFAAIERRVRRHKTFSKPVMASAKLQREYLELTRIESLL 166
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BLAST of mRNA_D-dudresnayi_contig10037.71.1 vs. uniprot
Match: A0A2P5B8S7_TREOI (DNA polymerase II subunit 2 n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5B8S7_TREOI)

HSP 1 Score: 72.0 bits (175), Expect = 1.360e-11
Identity = 57/179 (31.84%), Postives = 90/179 (50.28%), Query Frame = 3 
Query:   27 STAQAVFRAFKLQGLGIRADAAKAVVRVVDH--EEDVDGAVQAIIRATKARIERNELGSNVVDVDTVSAVVAGLSSREQDLTDSSTQTQS---------AFLRPRLYFDPVRNTLLLEDAGSRKRSMHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIDSSRREY--IMLSPLDSLV 524
            +T + V R  K++G  ++ DA   ++  V    + D D A+  ++     ++    L S ++D D V AVV  L   E  + D+S  T +         AFL P+L +DP++  L  E  GS    +HG A +KA +YR+RFL++ QR+ R   F  P  DS    +    +SP+ SLV
Sbjct:    5 TTRKKVQRRCKIRGYSLKVDALDDILSFVSRFPDADADDAIDLLLD----QLHNQTLKSPIIDKDAVRAVVTLLLEAEAAVDDTSNPTAATTSAIRVVDAFLLPKLRYDPIKK-LFYEQTGSLP--IHGDASAKAALYRDRFLLLFQRLTRDQHFSKPAFDSEMSNFGNCEISPIQSLV 176
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BLAST of mRNA_D-dudresnayi_contig10037.71.1 vs. uniprot
Match: A0A6J2W0C5_CHACN (DNA polymerase epsilon subunit n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2W0C5_CHACN)

HSP 1 Score: 71.2 bits (173), Expect = 2.760e-11
Identity = 44/149 (29.53%), Postives = 79/149 (53.02%), Query Frame = 3 
Query:   54 FKLQGLGIRADAAKAVVRVVD--HEEDVDGAVQAIIRATKARIERNELGSNVVDVDTVSAVVAGLSSREQDLTDSSTQTQSAFLRPRLYFDPVRNTLL-LEDAGSRKRSMHGPAESKARMYRERFLMVRQRVHRHDLFRPPIIDSSRRE 491
            FK++GL +R DA + +V V++  +E ++D  ++ I+ A    +E+  L S+++++      V   S    D  D+      AF  PR  +   R   + +      + S+ G A  KA ++RER+ +++QR HRH+LF PP++ S   E
Sbjct:   14 FKMRGLMLRPDACRYLVEVLESVNELELDDVIERILDA----VEKQPLSSSMIELSVAETAVQDCSQSSDDTIDNVFNIIGAFDVPRFIYSTERKKFVPISMTNHPQPSLCGQARDKAELFRERYTILQQRTHRHELFTPPVVGSDPGE 158
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10037.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD49_ECTSI2.510e-8786.83DNA polymerase epsilon subunit n=1 Tax=Ectocarpus ... [more]
A0A835YQA3_9STRA3.050e-3142.51DNA polymerase epsilon subunit n=1 Tax=Tribonema m... [more]
A0A4D9DAB7_9STRA4.980e-2842.94DNA polymerase II subunit 2 n=1 Tax=Nannochloropsi... [more]
W7TY64_9STRA2.270e-1847.37Dna-directed dna polymerase epsilon 2 n=1 Tax=Nann... [more]
A0A1V9YX49_9STRA1.640e-1634.32DNA polymerase epsilon subunit n=1 Tax=Achlya hypo... [more]
A0A7S0MZV0_9CHLO2.000e-1333.92DNA polymerase epsilon subunit n=1 Tax=Pyramimonas... [more]
A0A8C9VIE7_SCLFO2.400e-1230.20DNA polymerase epsilon subunit n=9 Tax=Scleropages... [more]
A0A067C3B3_SAPPC3.180e-1230.72DNA polymerase epsilon subunit n=3 Tax=Saprolegnia... [more]
A0A2P5B8S7_TREOI1.360e-1131.84DNA polymerase II subunit 2 n=2 Tax=Cannabaceae Ta... [more]
A0A6J2W0C5_CHACN2.760e-1129.53DNA polymerase epsilon subunit n=1 Tax=Chanos chan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10037contigD-dudresnayi_contig10037:1739..7383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.7
Seed ortholog evalue3.5e-72
Seed eggNOG ortholog2880.D8LD49
Preferred namePOLE2
KEGG rclassRC00005,RC02795
KEGG koko:K02325,ko:K10777
KEGG ReactionR00375,R00376,R00377,R00378,R00381
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03450,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03450,map05166
KEGG ModuleM00263
GOsGO:0000003,GO:0000082,GO:0000228,GO:0000278,GO:0000731,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006281,GO:0006301,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0008622,GO:0009058,GO:0009059,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010154,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019985,GO:0022402,GO:0022414,GO:0031261,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032875,GO:0032877,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034401,GO:0034641,GO:0034645,GO:0034654,GO:0040029,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045005,GO:0045740,GO:0045787,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051276,GO:0051302,GO:0051716,GO:0051726,GO:0051781,GO:0060255,GO:0061458,GO:0061695,GO:0065007,GO:0070013,GO:0070182,GO:0070828,GO:0070868,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090068,GO:0090304,GO:0090329,GO:0097549,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902292,GO:1902315,GO:1902494,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1990234,GO:2000105,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.error-prone translesion synthesis
EggNOG OGsKOG3818@1,KOG3818@2759
EC2.7.7.7,6.5.1.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size524
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10037.71.1prot_D-dudresnayi_contig10037.71.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10037 1739..7360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.6688519-CDS-D-dudresnayi_contig10037:1738..18671622927504.6688519-CDS-D-dudresnayi_contig10037:1738..1867Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10037 1739..1867 -
1690556781.6596742-CDS-D-dudresnayi_contig10037:1738..18671690556781.6596742-CDS-D-dudresnayi_contig10037:1738..1867Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10037 1739..1867 -
1622927504.6852944-CDS-D-dudresnayi_contig10037:2975..30271622927504.6852944-CDS-D-dudresnayi_contig10037:2975..3027Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10037 2976..3027 -
1690556781.6724288-CDS-D-dudresnayi_contig10037:2975..30271690556781.6724288-CDS-D-dudresnayi_contig10037:2975..3027Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10037 2976..3027 -
1622927504.6994765-CDS-D-dudresnayi_contig10037:3852..40771622927504.6994765-CDS-D-dudresnayi_contig10037:3852..4077Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10037 3853..4077 -
1690556781.6825309-CDS-D-dudresnayi_contig10037:3852..40771690556781.6825309-CDS-D-dudresnayi_contig10037:3852..4077Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10037 3853..4077 -
1622927504.7137828-CDS-D-dudresnayi_contig10037:7265..73601622927504.7137828-CDS-D-dudresnayi_contig10037:7265..7360Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10037 7266..7360 -
1690556781.6918402-CDS-D-dudresnayi_contig10037:7265..73601690556781.6918402-CDS-D-dudresnayi_contig10037:7265..7360Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10037 7266..7360 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.7258494-UTR-D-dudresnayi_contig10037:7360..73831622927504.7258494-UTR-D-dudresnayi_contig10037:7360..7383Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10037 7361..7383 -
1690556781.7058258-UTR-D-dudresnayi_contig10037:7360..73831690556781.7058258-UTR-D-dudresnayi_contig10037:7360..7383Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10037 7361..7383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10037.71.1

>prot_D-dudresnayi_contig10037.71.1 ID=prot_D-dudresnayi_contig10037.71.1|Name=mRNA_D-dudresnayi_contig10037.71.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=167bp
MSTAQAVFRAFKLQGLGIRADAAKAVVRVVDHEEDVDGAVQAIIRATKAR
IERNELGSNVVDVDTVSAVVAGLSSREQDLTDSSTQTQSAFLRPRLYFDP
VRNTLLLEDAGSRKRSMHGPAESKARMYRERFLMVRQRVHRHDLFRPPII
DSSRREYIMLSPLDSLV
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mRNA from alignment at D-dudresnayi_contig10037:1739..7383-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10037.71.1 ID=mRNA_D-dudresnayi_contig10037.71.1|Name=mRNA_D-dudresnayi_contig10037.71.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=5645bp|location=Sequence derived from alignment at D-dudresnayi_contig10037:1739..7383- (Desmarestia dudresnayi DdudBR16 monoicous)
CAAAGGCAGAAGCAACCTACGACATGTCGACGGCTCAGGCGGTGTTCCGG
GCGTTCAAGCTGCAGGGCCTGGGCATTCGAGCAGATGCCGCTAAAGCTGT
CGTCAGAGTGGTAGACCAGTAAGTTGGGGCTGCCTGTAACTACGCGATTT
TCAAATTTCCCCTCTGTATCTTGCTCAAATGATACTTAGCATAGGTATCA
TAGGTCCCGCGCTTTGCTATTTGCGACAGTCCAATGCCCAAGGATAGCGT
GTACGAGTACACAGGCATGTATATATATCTAGAGAGAGCTTGGGCTGTCA
GATGGTGTGTGTTTGTGTGTTTTTCGAGGAGCTTATAAGTGTCGAGGCGA
GGAGTCAACGAAAAACAAAGCCCGCAGGGCGGCTGCAATACTGTAGGTAG
ATGTGTTTCATGCAACCGCACCTTATACTCGTACTTCGAAGTATCGTTTC
TGCAGTGATGTCCAACAACAGACAGTACCACCACCACCACCACCACCACC
ACCACCACCACCGTGGCAGCGTGCACTGTGGCTCCTGCTCGTTCATGTCG
CGCTGACAGTATTGAGTCGTGTTTCGTGACAGATCTTCGACGCGGGACAC
ATGCCGTCCGTTTGCGAACCTAAAGTGACTAAAGCTCTACTACTGTTTTG
TGACAGAGCAGCGTGCACTTCTACCGTCATACCAGGAGTACCAGTAGCCT
TTACGAGCTTTCTTGGCACCCCTAACATACCAGATTAAGACTGGAATATA
TTTAGGGCTTTGTATAGTGTGTTTTTTCTTTTTTCTTGGACTCTTTTTTG
TTTTGTTTACGTCATCACGCGCGGCGAAGCCGCGCTGGGTGCGATCCTTA
TACTTATCTTTAGTGTGGCTTGGGGTTAGGGTTGGGGTTAGGGTTAGGGT
TGGGCTTGGCTTGGCTTGGGTCGACGCTCAACGCTGATTTTCATAAGAAA
AAGGCACCCAATAGCATAAAACACCATACAAAATCCTAATATATTCCAGT
CTTAATCTGGTATGTTAGGGGTGCCAACCTCGTAAAGAGCCCTCAGGAGT
ACGGTCGTATTTATAATATTAATAGTATTTACTACTACTGTACTACTGTC
TACTTGTGCGGTGCTACTGGTATGGTACACTCGTAGCCCGTACAAGGTAT
ACCTTAGGCGGTGGTCAGGTTAGACGACACGACATGGCGAAGAAAAATCG
AGAGGAGTGCGTCCGTAGCACAAGTACGTTGGCTTTCTTGCAGACTTTCG
CCGCCTGTGCTGTGTTGTGCATTGAGCATCTTCCAGCGCGAGCACCTCCT
GAGTCATGAGGCCATTGTTTCCGAACGTTGACAACCTTGTACTACGTATA
CTACGATTACATGAACCGGTTGAGTGCAGCATGTTCGTATACACCCAGAA
TGGGCATGCCCGATGTGCCTCGTGGATCAAAGAATCATGTTAACAACGTA
GATTAGCTCACAAAGCATCGACAAAGGAAAGAGAGAAAGAGAGAGTGGCC
TCCACCAGGGCACCCAGCACCCAGCACACAAATACACCGCTCGTTCTATA
GTATGCGACGCAATCGCCCTGCGATCTTATTGGCCAGAATACAAAAACGC
CAAATACAAATTCAAGTACGTACGAGAACGAGCACAGCATACATATCATA
CCGGTACTACTGTACATCCGATAGTTTAGCACCTCATCGCTATCGACCCG
TAGCCCGTAGCTCATCAGAGCGTCACAGGTGTTGAGAAATGTAGACTCTG
AACGCTTTCGACTTTCAAGCTTTCCTGTGCCCTGAACCACCCCAGTGATA
CAACTGCCAATCATATTGTATAGAATACTCGTACAGCAGGGCTCTCTGAT
TGTGCAGCTGTCTGGTGATACCGGTGCTGCAGGCGCGAACGGCTAGACTA
TGTAAAAGTGCCCCGTGTAGCTACGAGTTTCCAACCAACCCAACTGCACC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACACCCCCTCGCCGACACCC
GCCCACCCCCGTCCCCCCCCCCCCTCTACGTGGGGGNNNNNNNNNNTAGA
CTAGTTAAAAGGCCCCCGTGTAGCAACCAGTTTCCACCCCCCCCCCCCGC
CCCCCCCCCCCCCCCCTCCCAACGTCAATATCTTGGCACTGGGGAGTAGC
TCTGCATACGATATGCCCCTGTGAAGATGGTGTGGAGACCTTGATCTAAC
AGTTACACCATCCATGACTCCCTATTCCAGGAGAGAGACGCATCGCACCC
TCTAAGACTCTTAGATGTCTGCCGAAAATTGAGCCCTCTGAGACTCTTGC
ACGTCTGCGGAAAAATGAATTTGCTGGAATACCCTGTCAATGGAGCACCA
CAACAATAGCTATCACCATAGAACCTACCGCGCCAGGAAGAACATATCAA
TGTAGGGCATGCCTCGGAGTGTCAGAGCTCTAAAAGAAATTACCCCCGAC
GCGATTGTTTTTGTTGTCTGCACCGATGAGCTGTTTCGGCTTCCGGACGG
AGATCGAACTCCCTCTCCGTATACGACGTATAAGGTTTTGCACACTAGAC
TTTCCAACCTGTTCGGGGGCTGATTCTATCTTTTTTTTACTTGCTGTTAG
CATGGTGTGGTCGTTAGGTAAGGGTTAGAAAATAGAGGAGGTTTCGAACT
ACTGAACAGCCCACATGGTACTCTATTAGTGTATTAAAACGACGTCCTAA
ACGTCCCCCCGAACAACCATTGTTGGAAAATAGCCTCTCCATGTAGTCCG
CCCTGAGCTACAATAGTTGTGTGCAAGGTTTATGGTCCCGCGGAATCCCC
AACCAACCGGATTATCAATAACATTGGAGTTCCATTTGACATGGCGTAGT
AGCAACGCTGGGGTGCAGACACGCAGCTCGTACCATCCTCGTGAACTGCA
GCCTCAGTCGCCCAAAAATAAAACGGCATGTCGCTGCGCCCCCAGCGTTG
TAGGGGGCGCGAGGTCTCCGGTCGTTGACGGTTTCATTCTGTTGTCGTGA
GCCCGCCCTCCCACGCCGGCTCCCGACACATATCCCTCCTGCCGCTTCTT
TCTATCTTGAAACTTATCGCCGTGGCGTCAGGTAGGAACAGCACCTTAGC
CTCTCCCGGCGAGGTACCGCATGTGTCAAGCGTACCTATGATATTTTCAC
TCCTTCCTGTTGCTTTAACTTCCCATCTCAGTTCGCGCGGGAGTTTGTGG
TTCAACGGTGTTACAAAACGCTTGCGAAGCAACGGCTAATGTTAAAGGCA
TAGCACAATATTGATCACCCCCCCCCCCCCCCTCCCACCCTCCGTGATCT
GGGCAGCGAGGAGGATGTGGACGGTGCAGTTCAGGCCATCATTCGGGCCA
CCAAGGCTCGCATCGAGCGCAACGAGTTGGGTAGCAATGTGGTCGACGTA
GATACGGTGTCGGCTGTAGTGGCGGGCCTTTCGAGCCGAGAGCAAGACCT
GACGGACAGCAGTACCCAGACGCAGAGCGCCTTCCTCAGACCTCGCCTCT
ACTTCGACCCCGTCCGGAACACGCTGCTTCTGTGAGGAAACCGTATACCG
CTTAGAGTCGTTGGTCTTTGCTGCTGAAGGGAGAGGGCATTGAGCGTTTA
GCAAAGTGTGGCTAGCCGGTTATATTTGCCAGCAACGAAGTGATTTGGTG
TTGTTTCTTTAGGGAGAAGTTTGCAATGTGGGCCAGGCGATTGTTTTTTG
TTTTGTTCTTTTTTAACCATGTTATATTTCACTTTTGTAACATTCCCAGT
TGAGCTCACAGCAGCTAAACGCCCAGTGGCATTCTGGAGGAAGCCGTGGT
CACAGGTTTCCTCCTTTCTCTCCCGCCGTTACATGCATTTGGTTTTTTAT
CGTGCACAGGGAAGATTTGGCATTCCTATAGCTCGTCGAATTTCAACGAA
TTTTGCTTACTCGCGCTCTCCGCGACTGATGACGATACGCAGAAAAGTGA
CATTTTTTGTTTATTACCGGGATTCGAATCCCCGAACTTTGTGTGAACAG
GGGCGATAACCTAGATCATTAGCCTACTTATCGCGTTTATGATTGTTGTA
TGTACAGCTTGTTGGTTGTTCGCCCCCCTGCCACCGGGCAAGCCTGCTAA
GGAGCCCGTATTTATCCTGTTTAGACGTAGCAGCGTAAGGGTGGTGGCTA
TGAAAGCAGCTGGTATTACATCAACCATTGTGAAACGCAAGCTAGATGGG
CCGACCAACACGCCTCCATATCGTTCTGTCCCGGCATTGTTGTGGTCTAC
CATTGTTGGGATGCGAGGCCAATGGTTGATGGTCATCATTCACTATGGCA
TGCGATATTTTCTGAACGTAACTCCATCCCCATTCCTTTCCTCTACCGCT
CCGCAGGGAAGATGCGGGATCGAGAAAACGCAGTATGCATGGCCCGGCGG
AGAGCAAGGTGGGACGGGGGTCAGGGGGGGGGGGGGGGGGAGAGAGAGAG
ATGAAGTCGAGTCCGTATGCCAAAGCTCCAGCGTTAAAAGCGTGGGTGTT
AGTTGTTGGGCGTACACGGAGGCAAGGAGCGTTCTTGTTGCTTTTGTCGC
TGTCTTTTTTATTTAGTCAAATTCGTGTGTGTGGGCGAAACTGTCGGTGC
CGGGGAGGGCGGCGCGTTACGCTGCTCGGAACGTTCTTCCACCGAGTGTG
AGCCTTTTGTGTGCAGCAGTTGCTGCTGTAGCAGTCAGCGCCACTGTAGC
CCCCGTTTTGTTTTTTATGCTATGAACATCTTGTTGTTCGGTGGGTGAAC
CAATAGTAGCGAAATCAAAACAAAACTAGAAATGATATTTTTCTACACCT
GGCTTCGCCTGGGCGCGTGCACGCACCCCTGACCGGTTTGCGAGTGGATC
GACGTGTGTGTGTGTCGTGCTGTTTTTGCACGATTGCAAGCGCTTTACTG
CTACTCCCTGGCCGTGTACGTATTGCCACACTCTACGGACCAAAACATAC
ACCTGCAGACCAAAACAAACGCCTGCAAAGTGACCGGCGTACTGCAGGCT
TAGAGTTTACGCTTTGTGCCGTTTAACGTCAGCAGTGGTATTATTAGAAG
CCCGTGCGGTTGGCACCTTGGTTCTACCGCAACCGACTAAAGGCGTGGAC
AATTTCTTCCTAGGTGGCCATTTTAGTGGTTTGCTTGTTTCGTGGATGGA
TACCCTTGTGCGTAGAGACGACCCGTCAGACGCGCGCTGGTGGAGCCACC
GGAACCCGATACTTCATTGTGCGGCTTTTTGCGCCGGTGTGTGCCTGTTC
ATTTTTGTTCGAAAAGAAACCAACGCGAGCTCAGCCCACTGTTACCCTGT
AAAGACCAACGTCAGTCCAGGTCACTTCCATAGTGCAGCCGCCACGGAAA
ATATTTAGATTGTTCGCTCGGCCCGCGTGTGGGGCATGGCTTTTGTTTTG
TTCTCATGTCGCTGCAATTTCTCGCCTCTTTACTACTACAGTACTGTTAC
TGTTGTGCGCATGTCTGTTTTATTTTTTTTGTTTTTTCTCTCGCGTTTTC
CGTTGGTTGTTTTAAGGCACGGATGTATCGGGAGCGGTTTCTGATGGTGC
GGCAGAGGGTGCATCGGCACGACTTGTTCCGCCCCCCGATAATCGACTCG
TCGCGTCGGGAGTACATCATGCTGTCCCCTCTCGACTCTCTGGTG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10037:1739..7383-

>mRNA_D-dudresnayi_contig10037.71.1 ID=mRNA_D-dudresnayi_contig10037.71.1|Name=mRNA_D-dudresnayi_contig10037.71.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at D-dudresnayi_contig10037:1739..7383- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTCGACGGCTCAGGCGGTGTTCCGGGCGTTCAAGCTGCAGGGCCTGGG
CATTCGAGCAGATGCCGCTAAAGCTGTCGTCAGAGTGGTAGACCAATGTC
GACGGCTCAGGCGGTGTTCCGGGCGTTCAAGCTGCAGGGCCTGGGCATTC
GAGCAGATGCCGCTAAAGCTGTCGTCAGAGTGGTAGACCACGAGGAGGAT
GTGGACGGTGCAGTTCAGGCCATCATTCGGGCCACCAAGGCTCGCATCGA
GCGCAACGAGTTGGGTAGCAATGTGGTCGACGTAGATACGGTGTCGGCTG
TAGTGGCGGGCCTTTCGAGCCGAGAGCAAGACCTGACGGACAGCAGTACC
CAGACGCAGAGCGCCTTCCTCAGACCTCGCCTCTACTTCGACCCCGTCCG
GAACACGCTGCTTCTCGAGGAGGATGTGGACGGTGCAGTTCAGGCCATCA
TTCGGGCCACCAAGGCTCGCATCGAGCGCAACGAGTTGGGTAGCAATGTG
GTCGACGTAGATACGGTGTCGGCTGTAGTGGCGGGCCTTTCGAGCCGAGA
GCAAGACCTGACGGACAGCAGTACCCAGACGCAGAGCGCCTTCCTCAGAC
CTCGCCTCTACTTCGACCCCGTCCGGAACACGCTGCTTCTGGAAGATGCG
GGATCGAGAAAACGCAGTATGCATGGCCCGGCGGAGAGCAAGGGAAGATG
CGGGATCGAGAAAACGCAGTATGCATGGCCCGGCGGAGAGCAAGGCACGG
ATGTATCGGGAGCGGTTTCTGATGGTGCGGCAGAGGGTGCATCGGCACGA
CTTGTTCCGCCCCCCGATAATCGACTCGTCGCGTCGGGAGTACATCATGC
TGTCCCCTCTCGACTCTCTGGTGGCACGGATGTATCGGGAGCGGTTTCTG
ATGGTGCGGCAGAGGGTGCATCGGCACGACTTGTTCCGCCCCCCGATAAT
CGACTCGTCGCGTCGGGAGTACATCATGCTGTCCCCTCTCGACTCTCTGG
TG
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