mRNA_D-dudresnayi_contig10022.62.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10022.62.1
Unique NamemRNA_D-dudresnayi_contig10022.62.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig10022.62.1 vs. uniprot
Match: A0A1Y1WK86_9FUNG (HCP-like protein (Fragment) n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WK86_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 3.640e-12
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:   52 LHGKGVDKSESKGLEWLAKAANSGI------YSAHGAYLLGHLYLKGKLSVSK--TRTFALLKHASRGGQNEAFHDIGVCYEHGIGVDANLSIAIDYYRRSAKESNKLSMYNLGYILV 381
            L  K  D+  ++GL+W+ K A SGI       +A   + LG +Y +G   V +  ++ FA  + AS+    EA +   VCYE G+G   + + A+ +YR+SA +SN  +MY LG +L+
Sbjct:   28 LQKKRYDQMTNEGLKWIKKLAGSGITVHRSNIAAESQFFLGTVYSQGIYGVDRDDSKAFAYYQQASKAQHAEANYRTAVCYEVGVGTRRDAARAVQFYRKSAAQSNVPAMYKLGVVLI 145
[Close]
BLAST of mRNA_D-dudresnayi_contig10022.62.1 vs. uniprot
Match: UPI001F18D0DC (sel1 repeat family protein n=1 Tax=Pseudoalteromonas luteoviolacea TaxID=43657 RepID=UPI001F18D0DC)

HSP 1 Score: 68.6 bits (166), Expect = 1.120e-10
Identity = 40/119 (33.61%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:   13 GNIEAMLCLSQCYLHGKGVDKSESKGLEWLAKAANSGIYSAHGAYLLGHLYLKGKLSVSKTRTFALLKHASRGGQNEAFHDIGVCYEHGIGVDANLSIAIDYYRRSAKESNKLSMYNLG 369
            G + A+  +++ Y  GKGVDKSE K ++ +A+ A +   +    ++  H Y    + V   R     + A++   + A + +GV Y  G+GV AN+S+++DY++RSAK     +MYNLG
Sbjct:  706 GQVNALNKIAEFYWFGKGVDKSEYKAIDAIARLARAKKINV-SLFVGEHFYHGLYVDVDFIRARHYFELAAKQNDDIALNALGVIYRDGLGVAANVSLSLDYFKRSAKLGLAEAMYNLG 823
[Close]
BLAST of mRNA_D-dudresnayi_contig10022.62.1 vs. uniprot
Match: UPI0019A45B57 (SEL1-like repeat protein n=1 Tax=Ramlibacter sp. TaxID=1917967 RepID=UPI0019A45B57)

HSP 1 Score: 56.6 bits (135), Expect = 1.500e-6
Identity = 38/122 (31.15%), Postives = 58/122 (47.54%), Query Frame = 1 
Query:    4 SEKGNIEAMLCLSQCYLHGKGVDKSESKGLEWLAKAANSGIYSAHGAYLLGHLYLKGKLSVSKTRTFALLKHASRGGQNEAFHDIGVCYEHGIGVDANLSIAIDYYRRSAKESNKLSMYNLG 369
            +E G   AM      +L G  V +    G +WL KAA+ G    HG       YL G +S    +     + A+  G   A  D+G+CYE G GV+A++  A+ +Y R+  + N  + +N G
Sbjct:  220 AEAGEAAAMYEYGLHHLQGGDVPQGGRVGYDWLVKAADRG----HGQAQ----YLVGAMSKDPVKAARYRRIAAEQGHALAQFDLGMCYETGRGVEADVLAAMHWYGRAMAQGNMAAHFNFG 333
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10022.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1Y1WK86_9FUNG3.640e-1234.75HCP-like protein (Fragment) n=1 Tax=Linderina penn... [more]
UPI001F18D0DC1.120e-1033.61sel1 repeat family protein n=1 Tax=Pseudoalteromon... [more]
UPI0019A45B571.500e-631.15SEL1-like repeat protein n=1 Tax=Ramlibacter sp. T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10022contigD-dudresnayi_contig10022:7136..8047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.2
Seed ortholog evalue4.2e-07
Seed eggNOG ortholog38654.XP_006034343.1
Preferred nameKIAA0141
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006915,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008219,GO:0008625,GO:0009987,GO:0010941,GO:0012501,GO:0019222,GO:0023052,GO:0030162,GO:0042981,GO:0043067,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043281,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051336,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0065007,GO:0065009,GO:0080090,GO:0097190,GO:0097191,GO:2000116
EggNOG free text desc.extrinsic apoptotic signaling pathway via death domain receptors
EggNOG OGs39HCN@33154,3BDM9@33208,3CZ00@33213,48CCG@7711,495AS@7742,COG0790@1,KOG1550@2759
COG Functional cat.MOT
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size435
Cds size408
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10022.62.1prot_D-dudresnayi_contig10022.62.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10022 7163..8047 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927503.671453-UTR-D-dudresnayi_contig10022:7135..71621622927503.671453-UTR-D-dudresnayi_contig10022:7135..7162Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10022 7136..7162 +
1690556780.9557788-UTR-D-dudresnayi_contig10022:7135..71621690556780.9557788-UTR-D-dudresnayi_contig10022:7135..7162Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10022 7136..7162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927503.6840742-CDS-D-dudresnayi_contig10022:7162..72621622927503.6840742-CDS-D-dudresnayi_contig10022:7162..7262Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10022 7163..7262 +
1690556780.971256-CDS-D-dudresnayi_contig10022:7162..72621690556780.971256-CDS-D-dudresnayi_contig10022:7162..7262Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10022 7163..7262 +
1622927503.69447-CDS-D-dudresnayi_contig10022:7739..80471622927503.69447-CDS-D-dudresnayi_contig10022:7739..8047Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10022 7740..8047 +
1690556780.9805384-CDS-D-dudresnayi_contig10022:7739..80471690556780.9805384-CDS-D-dudresnayi_contig10022:7739..8047Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10022 7740..8047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10022.62.1

>prot_D-dudresnayi_contig10022.62.1 ID=prot_D-dudresnayi_contig10022.62.1|Name=mRNA_D-dudresnayi_contig10022.62.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=136bp
MLCLSQCYLHGKGVDKSESKGLEWLAKAANSGIYSAHGAYLLGHLYLKGK
LSVSKTRTFALLKHASRGGQNEAFHDIGVCYEHGIGVDANLSIAIDYYRR
SAKESNKLSMYNLGYILVQQAIEINKKLNQLQPYNN
back to top

mRNA from alignment at D-dudresnayi_contig10022:7136..8047+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10022.62.1 ID=mRNA_D-dudresnayi_contig10022.62.1|Name=mRNA_D-dudresnayi_contig10022.62.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=912bp|location=Sequence derived from alignment at D-dudresnayi_contig10022:7136..8047+ (Desmarestia dudresnayi DdudBR16 monoicous)
GCATCTGAAAAAGGTAATATTGAAGCAATGTTATGTTTAAGTCAATGTTA
TTTACATGGGAAAGGTGTTGATAAAAGTGAAAGTAAAGGGTTAGAATGGC
TAGCTAAAGCTGCAAATTCTGGTATTTGTCCAACAGCACAAAATGATTTA
GCAATGTTAATAATTAATAATATAAAAGAAAGAAATCCTAATTGTATTAT
AGAATATTGTGCTAGTTTAATTGATGAATGTAGTATTCGTCCTAATAATA
CTACTACTACTGGTACTTCTCCCTATAATAACACTAGTAGTACTACTGGC
AGTAATGAATATACAGTGGAGGATGCAATTAAGCTGCTCCTGGCTGCGGC
ACTGGAGGGTAGTGTGGAGGCGAAGTGCAGTCTGGGTGCAGTGTATGAGG
AGGCTGGGGATATTGACCAGGCGGCTGACTGGTGAGTTATAGGAGGAGTA
GTTTTGTGGTGGAAGTAGTATTTGTGTTATTGTCACTACTACTGCTACTG
TATTCTTGTTTAAATGGTGCAAATATTATATATTACTGCATATATAATAA
TAACCTTATCCTATATATGATTGTTACATAGGTATGCGCAAGCTGCTAAC
GAAGACAGTGCACATGGCGCTTATCTTCTTGGTCATCTTTATTTAAAAGG
AAAACTATCTGTGAGTAAAACACGTACTTTTGCACTCTTAAAACATGCTT
CTAGAGGCGGTCAAAACGAAGCTTTTCATGATATAGGCGTATGTTATGAG
CATGGTATAGGTGTTGACGCCAATCTTTCAATTGCAATTGATTATTATCG
TCGTAGTGCAAAAGAATCAAATAAATTAAGTATGTATAATTTAGGTTATA
TTTTAGTACAACAAGCAATAGAAATAAATAAAAAATTAAATCAATTACAA
CCATATAATAAT
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10022:7136..8047+

>mRNA_D-dudresnayi_contig10022.62.1 ID=mRNA_D-dudresnayi_contig10022.62.1|Name=mRNA_D-dudresnayi_contig10022.62.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at D-dudresnayi_contig10022:7136..8047+ (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTATGTTTAAGTCAATGTTATTTACATGGGAAAGGTGTTGATAAAAG
TGAAAGTAAAGGGTTAGAATGGCTAGCTAAAGCTGCAAATTCTGGTATTT
ATGTTATGTTTAAGTCAATGTTATTTACATGGGAAAGGTGTTGATAAAAG
TGAAAGTAAAGGGTTAGAATGGCTAGCTAAAGCTGCAAATTCTGGTATTT
ACAGTGCACATGGCGCTTATCTTCTTGGTCATCTTTATTTAAAAGGAAAA
CTATCTGTGAGTAAAACACGTACTTTTGCACTCTTAAAACATGCTTCTAG
AGGCGGTCAAAACGAAGCTTTTCATGATATAGGCGTATGTTATGAGCATG
GTATAGGTGTTGACGCCAATCTTTCAATTGCAATTGATTATTATCGTCGT
AGTGCAAAAGAATCAAATAAATTAAGTATGTATAATTTAGGTTATATTTT
AGTACAACAAGCAATAGAAATAAATAAAAAATTAAATCAATTACAACCAT
ATAATAATACAGTGCACATGGCGCTTATCTTCTTGGTCATCTTTATTTAA
AAGGAAAACTATCTGTGAGTAAAACACGTACTTTTGCACTCTTAAAACAT
GCTTCTAGAGGCGGTCAAAACGAAGCTTTTCATGATATAGGCGTATGTTA
TGAGCATGGTATAGGTGTTGACGCCAATCTTTCAATTGCAATTGATTATT
ATCGTCGTAGTGCAAAAGAATCAAATAAATTAAGTATGTATAATTTAGGT
TATATTTTAGTACAACAAGCAATAGAAATAAATAAAAAATTAAATCAATT
ACAACCATATAATAAT
back to top