mRNA_D-dudresnayi_contig10004.42.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10004.42.1
Unique NamemRNA_D-dudresnayi_contig10004.42.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10004.42.1 vs. uniprot
Match: D7FNR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR3_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 1.540e-84
Identity = 155/308 (50.32%), Postives = 182/308 (59.09%), Query Frame = 3
Query:    3 GVDANGAMLADARPADALLLLSGSHPGRHLPIFGWSLPDVYDELRLATRMRDSGLLPEGLAFWAVANPLTEASDEGVDRLRRKVQLGAEVILTQPPLAWQPFERWLRGVHLSGALRGGMPGHN------------------NKDSVHKATAPSHTPLADEQQNKSAGGATLLIGMPVITSPKGLRFWLELCGVEHHRSICKEAFKAFETPDENNAGRRPRSSGLDGPRHTTGNMTAHTDEATEKEVL--------PYGQAWFETTMSYLRCLDGAG--VAGVHVMAPGPGPRRRTKSLIDAGIFGPRR 842
            GVDA GA + + RPADALLL+SGSHPGR LP     LPDVYDELRLAT MR+SG LP+GLA WAVANPL EA + GVDR+R+KV+LGAEVILTQPPLAW+ FERWL+GVH SGAL       N                     S  +  +  H   A E +      A +L+G+PVITSPKGLRFWL+LCG+     +CK+ F+AF  P    A               TG+   H   A EK+          PYGQ W ETTM  L+ LDG+G  VAGVH+MAPG  PRRR   L   G FG  R
Sbjct:  163 GVDAEGAKVRNVRPADALLLVSGSHPGRRLPFAKSFLPDVYDELRLATSMRNSGRLPKGLALWAVANPLAEADEAGVDRVRKKVELGAEVILTQPPLAWELFERWLQGVHASGALGRSAAARNAGLTKPGEGTDATVKIFETSGSTGEERSTRHPLAAAEGRRGGDPAARILVGLPVITSPKGLRFWLDLCGLHDKPGVCKQVFEAFGQPSSVVA--------------RTGSEEPHAHPAGEKQATAVAGSPPSPYGQEWLETTMLKLKSLDGSGLGVAGVHLMAPGRAPRRRAIELAATGFFGKPR 456          
BLAST of mRNA_D-dudresnayi_contig10004.42.1 vs. uniprot
Match: A0A6H5L748_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L748_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 4.060e-84
Identity = 155/308 (50.32%), Postives = 183/308 (59.42%), Query Frame = 3
Query:    3 GVDANGAMLADARPADALLLLSGSHPGRHLPIFGWSLPDVYDELRLATRMRDSGLLPEGLAFWAVANPLTEASDEGVDRLRRKVQLGAEVILTQPPLAWQPFERWLRGVHLSGALRGGMPGHNN------------------KDSVHKATAPSHTPLADEQQNKSAGGATLLIGMPVITSPKGLRFWLELCGVEHHRSICKEAFKAFETPDENNAGRRPRSSGLDGPRHTTGNMTAHTDEATEKEVL--------PYGQAWFETTMSYLRCLDGAG--VAGVHVMAPGPGPRRRTKSLIDAGIFGPRR 842
            GVDA GA + + RPADALLL+SGSHPGR LP     L DVYDELRLAT MR+SG LP+GLA WAVANPLTE  + G+DR+R+KV+LGAEVILTQPPLAW+ FERWL+GVH SGAL G     N+                    S  +  +      A E Q      A +L+G+PVIT+PKGLRFWL LCG+  +  +CK+AF+AF  P    A               TG    H   A EK+          PYGQ W ETTM  L+ LDG+G  VAGVH+MAPG  PRRR   L  AG FG  R
Sbjct:  161 GVDAEGAKVPNVRPADALLLVSGSHPGRRLPFAKSFLMDVYDELRLATSMRNSGHLPKGLALWAVANPLTEVDEAGIDRVRKKVELGAEVILTQPPLAWELFERWLQGVHTSGALGGSAAARNDGLAKPGEGTDATMKMFEASGSTGEERSTRRPTAAAEGQRGGDSTARILVGLPVITAPKGLRFWLNLCGLHDNPGVCKQAFEAFGHPSSVVA--------------RTGTEEPHGHPAGEKQASAVAGSTPSPYGQEWLETTMLKLKSLDGSGLGVAGVHLMAPGRAPRRRAIQLAAAGFFGEPR 454          
BLAST of mRNA_D-dudresnayi_contig10004.42.1 vs. uniprot
Match: A0A8J9WJA9_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WJA9_9CHLO)

HSP 1 Score: 115 bits (288), Expect = 5.600e-25
Identity = 70/173 (40.46%), Postives = 86/173 (49.71%), Query Frame = 3
Query:    3 GVDANGAMLADARPADALLLLSGSHPGRHLPIFGWSLPDVYDELRLATRMRDSGLLPEGLAFWAVANPLTEASDEGVDRLRRKVQLGAEVILTQPPLAWQPFERWLRGVHLSGALRGGMPGHNNKDSVHKATAPSHTPLADEQQNKSAGGATLLIGMPVITSPKGLRFWLELC 521
            G++ +G   A  RPADALLL+SGSHP R    +   L D    L LA  +RD GLLP   + WAVANPL +  D     L RKV  GAEVILTQPPL +  FE W  GV   G                                  A  A ++IG+P++TS + + FWLELC
Sbjct:  133 GLEEDGRSAAGVRPADALLLVSGSHPLRRALAWSGVLQDSVSALHLAHSLRDQGLLPPQTSLWAVANPLVDTPDT----LERKVAAGAEVILTQPPLIYSKFESWFDGVDRLGV---------------------------------ASKAKIVIGIPMLTSSRSMLFWLELC 268          
BLAST of mRNA_D-dudresnayi_contig10004.42.1 vs. uniprot
Match: A0A2K3CVC3_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CVC3_CHLRE)

HSP 1 Score: 110 bits (275), Expect = 1.140e-22
Identity = 85/277 (30.69%), Postives = 119/277 (42.96%), Query Frame = 3
Query:   15 NGAMLADARPADALLLLSGSHPGRHLPIFGWSLPDVYDELRLATRMRDSGLLPEGLAFWAVANPLTEASDEGVDRLRRKVQLGAEVILTQPPLAWQPFERWLRGVHLSGALRGGMPGHNNKDSVHKATAPSHTPLADEQQNKSAGGATLLIGMPVITSPKGLRFWLELCGVEHH---RSICKEAFKAFETPDENNAGRRPRSSGLDGPRHTTGNMTAHTDEATEKEVLPYGQAWFETTMSYLRCLDGAGVAGVHVMAPGPGPRRRTKSLIDAGIFGP 836
            +GA  A  + A+ LL +SGSHP R LP     L    D LR+A R+R  G +P     W VANP TE    G   L RK +LGA  +LTQPPL W+ +  WL      G L   +P  N++     +T+ S +         SAG   L++G P+ +S   L FW+ L G       R +  +A +A        AG         G      +  A+  +  E +VL +G                 GVAG+HVM  G   +     ++  G   P
Sbjct:  221 DGAEAAGGQRANVLLCVSGSHPVRTLPGVASLLRSSLDTLRIADRLRQRGYIPPCTQLWVVANPNTE---RGAGLLERKTELGANAVLTQPPLDWEAYLAWLEDARRRGLLNEQLPPGNSR-----STSLSSSGXXXXXXXXSAGPLRLIVGHPMASSAANLSFWVSLAGCGGSAAARQLVADALRA-------EAG---------GKEAAAAHAAAYNSKLVE-QVLAHG-----------------GVAGLHVMPIGKASKALALRMLAEGALPP 455          
BLAST of mRNA_D-dudresnayi_contig10004.42.1 vs. uniprot
Match: A0A835WUH7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WUH7_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 1.400e-22
Identity = 83/277 (29.96%), Postives = 114/277 (41.16%), Query Frame = 3
Query:   15 NGAMLADARPADALLLLSGSHPGRHLPIFGWSLPDVYDELRLATRMRDSGLLPEGLAFWAVANPLTEASDEGVDRLRRKVQLGAEVILTQPPLAWQPFERWLRGVHLSGALRGGMPGHNNKDSVHKATAPSHTPLADEQQNKSAGGATLLIGMPVITSPKGLRFWLELCGVEHH---RSICKEAFKAFETPDENNAGRRPRSSGLDGPRHTTGNMTAHTDEATEKEVLPYGQAWFETTMSYLRCLDGAGVAGVHVMAPGPGPRRRTKSLIDAGIFGP 836
            +GA+ A  + AD LL +SGSHP R LP     L    D LRLA R+R +G +P     W VANP TE    G   L RK +LGA  +LTQPPL W  +  WL      G L   +P   +  S       S T       + + G   L++G P+ +S   L FW+ L G       R +  +A +A                   G +      TA  +    ++VL +G                 GVAG+HVM  G   +     ++  G   P
Sbjct:  210 DGAVAAGGQRADVLLCVSGSHPVRTLPGVSSLLRSSLDTLRLADRLRQAGYIPPSTQLWVVANPNTE---RGAGLLERKSELGANAVLTQPPLDWNAYLAWLEDARSRGLLNEQLPMPGSSSSS------SSTGXXXXXGSSTGGPVRLIVGHPMASSAANLSFWVSLAGCGGSVAARQLVADAMRAEA-----------------GGKEAAAAHTASYNRKLVEQVLAHG-----------------GVAGLHVMPIGKASKGLALRMLADGSLPP 443          
BLAST of mRNA_D-dudresnayi_contig10004.42.1 vs. uniprot
Match: A0A835YF65_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YF65_9CHLO)

HSP 1 Score: 108 bits (269), Expect = 3.840e-22
Identity = 68/176 (38.64%), Postives = 88/176 (50.00%), Query Frame = 3
Query:   45 ADALLLLSGSHPGRHLPIFGWSLPDVYDELRLATRMRDSGLLPEGLAFWAVANPLTEASDEGVDRLRRKVQLGAEVILTQPPLAWQPFERWLRGVHLSGALRGGMPGHNNKDSVHKATAPSHTPLADEQQ----------------NKSAGGATLLIGMPVITSPKGLRFWLELCG 524
            A ALL +SGSHP R LP+         D LR+ATR+R +G +P     WAVANP TE    G   L RKV+LGA+V+LTQPPL W+ +  WL      G L   +P          ++APS +  A E                  + +  GA LL+G P+ +S   L FWL L G
Sbjct:  159 ARALLCVSGSHPVRSLPLVPSLFRSSLDTLRIATRLRAAGAIPPDTQLWAVANPNTE---RGAGLLERKVELGAQVVLTQPPLDWEAYLAWLGDAERRGLLLPALP---------SSSAPSPSAPASEAAGADXXXXXXXXXXXTPSPTDAGARLLVGHPMASSAGNLSFWLALSG 322          
BLAST of mRNA_D-dudresnayi_contig10004.42.1 vs. uniprot
Match: A0A061R353_9CHLO (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R353_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 5.180e-22
Identity = 63/160 (39.38%), Postives = 80/160 (50.00%), Query Frame = 3
Query:   45 ADALLLLSGSHPGRHLPIFGWSLPDVYDELRLATRMRDSGLLPEGLAFWAVANPLTEASDEGVDRLRRKVQLGAEVILTQPPLAWQPFERWLRGVHLSGALRGGMPGHNNKDSVHKATAPSHTPLADEQQNKSAGGATLLIGMPVITSPKGLRFWLELCG 524
            A+ALL +SGSHP R L I G  LP   D L +A  M+  G LP  L  WAV NPL E   +   RLRRK++ GAEV++TQPPL W  F+RW       G L                          EQ         L++G+P+++S   L FWL+LCG
Sbjct:   61 ANALLCVSGSHPVRQLSIMGRLLPSSLDTLAMAGEMKARGNLPGSLRLWAVENPLLEYDAQ---RLRRKIEAGAEVVVTQPPLDWDSFQRWADDADRLGLL--------------------------EQ-------CQLVVGLPMLSSAGNLAFWLQLCG 184          
BLAST of mRNA_D-dudresnayi_contig10004.42.1 vs. uniprot
Match: A0A2P6VAW2_9CHLO (5,10-methylenetetrahydrofolate reductase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VAW2_9CHLO)

HSP 1 Score: 105 bits (262), Expect = 2.660e-21
Identity = 65/177 (36.72%), Postives = 86/177 (48.59%), Query Frame = 3
Query:    3 GVDANGAMLADARPADALLLLSGSHPGRHLPIFGWSLPDVYDELRLATRMRDSGLLPEGLAFWAVANPLTEASDEGVDRLRRKVQLGAEVILTQPPLAWQPFERWLRGVHLSGALRGGMPGHNNKDSVHKATAPSHTPLADEQQNKSAGGATLLIGMPVITSPKGLRFWLELCGVEH 533
            GVDA+G        ADALL +SGSHP RHLP     L   +D L LA+ MR+ G LP  L+ WAV NP+       V RL +K++ GAEVI+TQPPL W     W                                  AD+Q  + +    +++G+P++ S   L FWL LCGV +
Sbjct:  164 GVDASGDPKPGGSSADALLFVSGSHPARHLPGATKWLQSSFDLLLLASAMREEGYLPPSLSLWAVENPMLSP----VSRLDKKIENGAEVIITQPPLLWNRTALWFE-------------------------------QADKQ--RLSQNVKVVLGLPIVPSVGNLEFWLRLCGVRN 303          
BLAST of mRNA_D-dudresnayi_contig10004.42.1 vs. uniprot
Match: A0A7J7Q9T3_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q9T3_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 5.010e-21
Identity = 67/182 (36.81%), Postives = 90/182 (49.45%), Query Frame = 3
Query:    3 GVDANGAMLA--DARP-ADALLLLSGSHPGRHLPIFGWSLPDVYDELRLATRMRDSGLLPEGLAFWAVANPLTEASDEGVDRLRRKVQLGAEVILTQPPLAWQPFERWLRGVHLSGALRGGMPGHNNKDSVHKATAPSHTPLADEQQNKSAGGATLLIGMPVITSPKGLRFWLELCGVEHHR 539
            GV  +G  +A  + RP ADALLL+SGSHP R LP+    LP     LR A++++  G+LP+ LA WAVANP+ E      ++   K+  GAEVILTQPPL W  F  W+                                  D QQ +    A LL+G P+++S   + FW  LCG   +R
Sbjct:   45 GVTPSGMRMAVGEQRPHADALLLVSGSHPVRTLPLLQQFLPGSVAMLRQASQLKQCGVLPQQLALWAVANPVMEPDASYAEQ---KIAAGAEVILTQPPLDWAKFVAWME---------------------------------DAQQRQLHTAARLLVGFPLLSSAANMTFWAALCGAGGNR 190          
BLAST of mRNA_D-dudresnayi_contig10004.42.1 vs. uniprot
Match: A0A2V0PHH2_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PHH2_9CHLO)

HSP 1 Score: 102 bits (255), Expect = 3.910e-20
Identity = 60/161 (37.27%), Postives = 75/161 (46.58%), Query Frame = 3
Query:   42 PADALLLLSGSHPGRHLPIFGWSLPDVYDELRLATRMRDSGLLPEGLAFWAVANPLTEASDEGVDRLRRKVQLGAEVILTQPPLAWQPFERWLRGVHLSGALRGGMPGHNNKDSVHKATAPSHTPLADEQQNKSAGGATLLIGMPVITSPKGLRFWLELCG 524
            PADALLL+SGSHP R +P     LP     LR AT +R +G +P   + WAVANP+TE       R   KV+ GAE ILTQPPL W  FERW                                  AD ++      A +++G P ++S     FWL L G
Sbjct:  230 PADALLLVSGSHPARQVPGIASVLPGSISMLRTATGLRAAGAIPAATSLWAVANPVTERD---ASRTEAKVEAGAEAILTQPPLDWPAFERW---------------------------------WADAERRGLTRAAKIVVGFPALSSAANATFWLALAG 354          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10004.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FNR3_ECTSI1.540e-8450.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L748_9PHAE4.060e-8450.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J9WJA9_9CHLO5.600e-2540.46Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A2K3CVC3_CHLRE1.140e-2230.69Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A835WUH7_9CHLO1.400e-2229.96Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A835YF65_9CHLO3.840e-2238.64Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A061R353_9CHLO5.180e-2239.38Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A2P6VAW2_9CHLO2.660e-2136.725,10-methylenetetrahydrofolate reductase n=1 Tax=M... [more]
A0A7J7Q9T3_9CHLO5.010e-2136.81Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A2V0PHH2_9CHLO3.910e-2037.27Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10004contigD-dudresnayi_contig10004:7620..9594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score105.9
Seed ortholog evalue3e-20
Seed eggNOG ortholog554065.XP_005846552.1
EggNOG OGs2E0ZU@1,2S8CR@2759,34N70@3041,37XFJ@33090
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1362
Cds size825
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10004.42.1prot_D-dudresnayi_contig10004.42.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10004 8134..9571 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927501.488936-UTR-D-dudresnayi_contig10004:7619..81331622927501.488936-UTR-D-dudresnayi_contig10004:7619..8133Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10004 7620..8133 -
1690556779.1092508-UTR-D-dudresnayi_contig10004:7619..81331690556779.1092508-UTR-D-dudresnayi_contig10004:7619..8133Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10004 7620..8133 -
1622927501.5356977-UTR-D-dudresnayi_contig10004:9571..95941622927501.5356977-UTR-D-dudresnayi_contig10004:9571..9594Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10004 9572..9594 -
1690556779.2024155-UTR-D-dudresnayi_contig10004:9571..95941690556779.2024155-UTR-D-dudresnayi_contig10004:9571..9594Desmarestia dudresnayi DdudBR16 monoicousUTRD-dudresnayi_contig10004 9572..9594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927501.5005531-CDS-D-dudresnayi_contig10004:8133..86681622927501.5005531-CDS-D-dudresnayi_contig10004:8133..8668Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10004 8134..8668 -
1690556779.1331754-CDS-D-dudresnayi_contig10004:8133..86681690556779.1331754-CDS-D-dudresnayi_contig10004:8133..8668Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10004 8134..8668 -
1622927501.5142324-CDS-D-dudresnayi_contig10004:8935..90881622927501.5142324-CDS-D-dudresnayi_contig10004:8935..9088Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10004 8936..9088 -
1690556779.1588855-CDS-D-dudresnayi_contig10004:8935..90881690556779.1588855-CDS-D-dudresnayi_contig10004:8935..9088Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10004 8936..9088 -
1622927501.5258021-CDS-D-dudresnayi_contig10004:9434..95711622927501.5258021-CDS-D-dudresnayi_contig10004:9434..9571Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10004 9435..9571 -
1690556779.1821504-CDS-D-dudresnayi_contig10004:9434..95711690556779.1821504-CDS-D-dudresnayi_contig10004:9434..9571Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10004 9435..9571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10004.42.1

>prot_D-dudresnayi_contig10004.42.1 ID=prot_D-dudresnayi_contig10004.42.1|Name=mRNA_D-dudresnayi_contig10004.42.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=275bp
MLADARPADALLLLSGSHPGRHLPIFGWSLPDVYDELRLATRMRDSGLLP
EGLAFWAVANPLTEASDEGVDRLRRKVQLGAEVILTQPPLAWQPFERWLR
GVHLSGALRGGMPGHNNKDSVHKATAPSHTPLADEQQNKSAGGATLLIGM
PVITSPKGLRFWLELCGVEHHRSICKEAFKAFETPDENNAGRRPRSSGLD
GPRHTTGNMTAHTDEATEKEVLPYGQAWFETTMSYLRCLDGAGVAGVHVM
APGPGPRRRTKSLIDAGIFGPRRE*
back to top

mRNA from alignment at D-dudresnayi_contig10004:7620..9594-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10004.42.1 ID=mRNA_D-dudresnayi_contig10004.42.1|Name=mRNA_D-dudresnayi_contig10004.42.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=1975bp|location=Sequence derived from alignment at D-dudresnayi_contig10004:7620..9594- (Desmarestia dudresnayi DdudBR16 monoicous)
CCGGGGTCGACGCAAACGGAGCAATGCTTGCGGATGCGCGGCCGGCCGAT GCGCTGCTGCTTCTGTCGGGGAGCCACCCCGGGAGACACTTGCCGATATT CGGGTGGTCTCTTCCCGATGTTTACGATGAGCTTCGGTTGGCAACGAGAA TGAGAGATAGGTGTGTGAACATGAACGCCTACTTCCTTTTATTTTTGCCA GTAGGCAACCATGGCGTTGCCCGTGCATTGTGCGCTCGAAGTGTGAGTGG AATCCTACCCACCCCCACCCCTAACGCCAACCAAAACTCCAACCCATCCC AACCCTATCTCCAACCTAAACCATCGCATGCTGCTTTGGGTACTGTTTAC GGGCGGCGAGTATATCTAACTATTTCACCAGTCTAGCTGCCGACAATGTA CGATCAACACGAAATCTAGGGACCATGATCCTGCAAGTGCAAGCTCCGTT CTTGCACTGGTTCATCCCGCGTGTCCGCTTGCTGTGCCTTTTGCCTCTAT CTGCAGCGGTCTTTTGCCCGAGGGGTTGGCTTTTTGGGCGGTTGCGAACC CTTTGACCGAGGCCAGCGACGAAGGCGTGGATCGCCTCCGGCGGAAGGTA CAGCTAGGAGCGGAGGTTATCCTCACCCAGCCTCCCCTTGCCTGGCAGCC TTTTGAACGGTGAGAATGTCAGAATCCCCGGCAGGACGGCTTTTGTGCCG GCCTCGCTGTTCTGGCAGTTGTTCGTGCGATTTCCGCATTTATTGGTAGT TTACACACATCAGCCTTGACGTTCGAAACAGATTTAAAGTCAGGCAGGGG ATAATCATAATCGTCACCTTCACCACTACTACTTACTACGGTGTAATATC TCGTGCATTTGCCTTCTTCTGCTTTGTATCCGACTGCGGGCGAATTCGGA TCCTCTCGCTGATTGACCATTTTCAGGTGGCTTCGAGGCGTTCATTTGAG CGGGGCTTTGAGGGGGGGCATGCCTGGCCACAATAATAAGGACAGCGTCC ACAAGGCGACCGCTCCGTCGCACACACCTCTGGCGGACGAGCAGCAAAAC AAGTCAGCAGGAGGGGCCACACTTCTGATTGGCATGCCGGTCATCACCTC TCCGAAGGGACTTCGTTTCTGGCTAGAGCTATGTGGAGTGGAGCACCACC GGAGCATCTGTAAGGAGGCGTTTAAAGCCTTCGAGACCCCAGACGAGAAT AACGCAGGCCGGCGTCCGCGGAGTTCTGGGTTAGATGGTCCTCGACATAC GACAGGGAACATGACAGCACATACGGATGAGGCCACGGAGAAGGAAGTGT TGCCATATGGACAGGCGTGGTTTGAAACAACGATGTCGTACCTGCGATGC CTTGATGGCGCAGGTGTGGCAGGGGTGCATGTCATGGCACCCGGCCCGGG GCCTAGACGAAGGACGAAGTCGCTCATCGACGCTGGTATTTTTGGGCCAC GACGGGAATAACCCTGTTTTCCAAGAATTACCAACAGCGTTTTTCATCCT TCTTTGGCAAGCATCTATTTTGCCTGCAATATCACTCGTAGTAGTAGTGA CTTGCCCGCTGGAGCGCTTGTCTTCTTGCACAATCGCGAAAACAACACGT ACTCGTACGTCTCTAGAAGAGTAGAACTGAATCATGATCTGCAATGAAAG CGCTCAACCTCATTCCAACCCCACAGGCTACATGATGGGCTGGCGTCACA TCAGCAAGATAAGAAGCAGCCGTACGAGAGTGTACCATCACAGATGACGT GTGCCATAAGACATGCGAAGGCAAAAGCTTCAGCATGCTACAACATCGTA TCATAATCTGAGCGTTTTACACTCTGTTGTATTTAAGACCAAGGGGGAAA CCCAGGGATCGAATAAGAACAAAATGAATATGAACCGTAACGGAGACAAA AAAGGTGTGACAATCTCTCCAATTGCTCAGCGATGGGCTGATTCATCAGA GTTCGTACACTATACCCACGTCAAA
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10004:7620..9594-

>mRNA_D-dudresnayi_contig10004.42.1 ID=mRNA_D-dudresnayi_contig10004.42.1|Name=mRNA_D-dudresnayi_contig10004.42.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at D-dudresnayi_contig10004:7620..9594- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGCTTGCGGATGCGCGGCCGGCCGATGCGCTGCTGCTTCTGTCGGGGAG
CCACCCCGGGAGACACTTGCCGATATTCGGGTGGTCTCTTCCCGATGTTT
ACGATGAGCTTCGGTTGGCAACGAGAATGAGAGATAGATGCTTGCGGATG
CGCGGCCGGCCGATGCGCTGCTGCTTCTGTCGGGGAGCCACCCCGGGAGA
CACTTGCCGATATTCGGGTGGTCTCTTCCCGATGTTTACGATGAGCTTCG
GTTGGCAACGAGAATGAGAGATAGCGGTCTTTTGCCCGAGGGGTTGGCTT
TTTGGGCGGTTGCGAACCCTTTGACCGAGGCCAGCGACGAAGGCGTGGAT
CGCCTCCGGCGGAAGGTACAGCTAGGAGCGGAGGTTATCCTCACCCAGCC
TCCCCTTGCCTGGCAGCCTTTTGAACGCGGTCTTTTGCCCGAGGGGTTGG
CTTTTTGGGCGGTTGCGAACCCTTTGACCGAGGCCAGCGACGAAGGCGTG
GATCGCCTCCGGCGGAAGGTACAGCTAGGAGCGGAGGTTATCCTCACCCA
GCCTCCCCTTGCCTGGCAGCCTTTTGAACGGTGGCTTCGAGGCGTTCATT
TGAGCGGGGCTTTGAGGGGGGGCATGCCTGGCCACAATAATAAGGACAGC
GTCCACAAGGCGACCGCTCCGTCGCACACACCTCTGGCGGACGAGCAGCA
AAACAAGTCAGCAGGAGGGGCCACACTTCTGATTGGCATGCCGGTCATCA
CCTCTCCGAAGGGACTTCGTTTCTGGCTAGAGCTATGTGGAGTGGAGCAC
CACCGGAGCATCTGTAAGGAGGCGTTTAAAGCCTTCGAGACCCCAGACGA
GAATAACGCAGGCCGGCGTCCGCGGAGTTCTGGGTTAGATGGTCCTCGAC
ATACGACAGGGAACATGACAGCACATACGGATGAGGCCACGGAGAAGGAA
GTGTTGCCATATGGACAGGCGTGGTTTGAAACAACGATGTCGTACCTGCG
ATGCCTTGATGGCGCAGGTGTGGCAGGGGTGCATGTCATGGCACCCGGCC
CGGGGCCTAGACGAAGGACGAAGTCGCTCATCGACGCTGGTATTTTTGGG
CCACGACGGGAATAAGTGGCTTCGAGGCGTTCATTTGAGCGGGGCTTTGA
GGGGGGGCATGCCTGGCCACAATAATAAGGACAGCGTCCACAAGGCGACC
GCTCCGTCGCACACACCTCTGGCGGACGAGCAGCAAAACAAGTCAGCAGG
AGGGGCCACACTTCTGATTGGCATGCCGGTCATCACCTCTCCGAAGGGAC
TTCGTTTCTGGCTAGAGCTATGTGGAGTGGAGCACCACCGGAGCATCTGT
AAGGAGGCGTTTAAAGCCTTCGAGACCCCAGACGAGAATAACGCAGGCCG
GCGTCCGCGGAGTTCTGGGTTAGATGGTCCTCGACATACGACAGGGAACA
TGACAGCACATACGGATGAGGCCACGGAGAAGGAAGTGTTGCCATATGGA
CAGGCGTGGTTTGAAACAACGATGTCGTACCTGCGATGCCTTGATGGCGC
AGGTGTGGCAGGGGTGCATGTCATGGCACCCGGCCCGGGGCCTAGACGAA
GGACGAAGTCGCTCATCGACGCTGGTATTTTTGGGCCACGACGGGAATAA
back to top