mRNA_D-dudresnayi_contig10000.37.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10000.37.1
Unique NamemRNA_D-dudresnayi_contig10000.37.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig10000.37.1 vs. uniprot
Match: A0A6H5JZK9_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZK9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 7.810e-9
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:  121 QMDIERVQAEVQAKVAAEADNEDMVLRKIRAQGEEDRRRTQ 243
            QMD+ERVQAEV+AK AAE  NED++LRKI+AQGEEDRRRTQ
Sbjct:   12 QMDMERVQAEVEAKFAAEQQNEDVMLRKIKAQGEEDRRRTQ 52
[Close]
BLAST of mRNA_D-dudresnayi_contig10000.37.1 vs. uniprot
Match: D8LE55_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE55_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.580e-6
Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   85 MEIERAMDTEKLQMDIERVQAEVQAKVAAEADNEDMVLRKIRAQ 216
            M++E+ M+ +K QMDIERVQAEV+AK AAE  NED++LRKI+AQ
Sbjct:    1 MDLEQEMEAQKRQMDIERVQAEVEAKFAAEQQNEDVMLRKIQAQ 44
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10000.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZK9_9PHAE7.810e-980.49AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LE55_ECTSI1.580e-665.91AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10000contigD-dudresnayi_contig10000:7700..10209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-16_004460.1
Hectar predicted targeting categoryother localisation
Exons3
Model size244
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10000.37.1prot_D-dudresnayi_contig10000.37.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10000 7700..10209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927501.0408108-CDS-D-dudresnayi_contig10000:7699..77261622927501.0408108-CDS-D-dudresnayi_contig10000:7699..7726Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10000 7700..7726 -
1690556778.4673479-CDS-D-dudresnayi_contig10000:7699..77261690556778.4673479-CDS-D-dudresnayi_contig10000:7699..7726Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10000 7700..7726 -
1622927501.0506568-CDS-D-dudresnayi_contig10000:8899..89921622927501.0506568-CDS-D-dudresnayi_contig10000:8899..8992Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10000 8900..8992 -
1690556778.5662692-CDS-D-dudresnayi_contig10000:8899..89921690556778.5662692-CDS-D-dudresnayi_contig10000:8899..8992Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10000 8900..8992 -
1622927501.0643394-CDS-D-dudresnayi_contig10000:10086..102091622927501.0643394-CDS-D-dudresnayi_contig10000:10086..10209Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10000 10087..10209 -
1690556778.5985906-CDS-D-dudresnayi_contig10000:10086..102091690556778.5985906-CDS-D-dudresnayi_contig10000:10086..10209Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10000 10087..10209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10000.37.1

>prot_D-dudresnayi_contig10000.37.1 ID=prot_D-dudresnayi_contig10000.37.1|Name=mRNA_D-dudresnayi_contig10000.37.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=81bp
MFVPAQEESARRREALRLQTETEVRNKRMEIERAMDTEKLQMDIERVQAE
VQAKVAAEADNEDMVLRKIRAQGEEDRRRTQ
back to top

mRNA from alignment at D-dudresnayi_contig10000:7700..10209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10000.37.1 ID=mRNA_D-dudresnayi_contig10000.37.1|Name=mRNA_D-dudresnayi_contig10000.37.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=2510bp|location=Sequence derived from alignment at D-dudresnayi_contig10000:7700..10209- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTTGTTCCTGCACAGGAGGAATCTGCACGCCGAAGAGAAGCCTTGCG
GCTCCAGACGGAGACTGAAGTGCGCAACAAAAGGATGGAAATCGAGCGAG
CTATGGACACCGAAAAGCTTCAGGTGTTCCTTTCACACGTCAACGTACTC
CATGGTGGTAACAAGGAACAGCAGCCATCATAGTGCACTTTGAGTATTAG
GCTTCCCCATTGCATTGAAAGATAACAAAGGACCGCTGAAGTTTACATTA
AAATATTTGGAGTATATCTGGAGGTTGTGGTTGTATGTACGTTTTCTGTA
TTGACAGTCGATATCTCAAGTCCAGCTCAAAGCCGGCGGCCCGTCGCATC
AAGGTGTCGGCTTACCAGGGCGTTTTCCGTAAGAGCAAAAACTCAAGTAG
TACAAACAAAGGAGCAATGTTTGTCGCCCAGTACCGACTCGACAATACAC
AATCGGCGTTCTTGATACCTCTGCGCACAACAACGAAAACAACCCAAACA
TTCGAAACGTCGGCATAGCACAGCACTACCCTACAACGGAAGTGCCGGGT
ATCCGCTTCACGTGGAAGGGCGCTGCTACGCTAGAACAACGCATACGTTG
CGGTATATGATTGGAGGTTGATAAGACAGACCCCGCTAGTAACGAAGTGG
CCTCTTGTGGTAATTTTGTCAGGGAACACCTGATCGATCACTATGTCCTC
CTGTGGGAGTTATTCCAAAGCAAGCAAAAGGTGGTCAAGAGAATGCGGGA
CACCCCGTCTAAAATAATTCAAAGCATGCTTCAAGTATGTACGTAGTCAC
GTGCTGTACTACCCCGGCGCAACAGTACGTCACCCGGCTTCCATTCCCAA
AAACGATAAAAACAAAAACAAAAAAAAGTGCAAGCCCACTGGACGCCACC
ATCGCTAGGTTTTGAAGGCTGTAGCGACATCCACAATGACAACTCGCGTA
TCAAGTCCCGAAGGCATGCTGACCAATAGCCACAATGTCAGACCGGCTCC
ACTAGAAGGAGGTATCCCAAACAAGCCATCTATTTGAGAGGCTCCGGGCT
TGTAAATCGTCGGCTGAGGAGCAAGAATGTAAAACTCGTGCGCCGGAAAC
CCGTCATGCTATGCCATGTACTCTACCTATCTAGTGTGCTCGGAATATGT
CTTTTCTTTGTTCTCTATTGGGCTCTTCTTGAGACAGATCGTGGCTTTGT
GTTTTTCGTGGTGGCAGATGGATATAGAGCGGGTACAGGCGGAGGTGCAG
GCTAAGGTCGCTGCCGAGGCGGACAACGAAGACATGGTCCTGAGAAAAAT
ACGTGCTCAGGTAAGGGATGCACTGTACTCCGTGACTTGCTACCAGTCGT
CGTCTTGCTGACGCTGCTATAACAGGGCTATTGTACACCGAAGCTTGGGT
GATGTACACTGCCGCAGTAGGCGCAATTTTTACAGTTCTGCGTCATACAC
GGTTCAGGAGGGGTTATCTTCACCAAACGTGTCTCCAGTCGAAATGCTTG
CCATTAGCCCGTACTGTAAAATAATGTAAAATAATATACTACCCGGAGTG
GTTGGTGAATTTTGACCCGGCGAGGGGAGGGTGTGGGTGGCTCAATTTGC
AACTTGCTCCTCTATTCTTCACGAAGAAGTTGACGCCGTGAATCCGATGA
GATTCAAGATCTTGATCGACGTTTCGTGGGTTTCGCCGATCCGACAGATT
GCTTACTGCCCGTGGCCCAGACAGGCATCACCACCTTCGATGTCCGTTGA
TGCACTGGATTGTAGGAACTCCCAAGGGGGCATATTCCCAACAATATTAC
GTGTCACGAATTCATTCGGCACACTATACATCAAATACATCACGCGCACC
GCTGTAGACCTTCAATTTAACGAGGCGATATTTACACGACCACACCGAGG
CCGACGTCCCCGGCGAAATTGTGGGCGTAGTCGCGCCTGCAACATATTGC
GGTTACTGGGGATGCCCGATAAATCCATGCCAAACCCGGTCTGGCGCAAC
GCAAGGGCGATTAATAACAGCTGGTATCGTCCTCATGGGACACGTGCTGG
AGTGGCGACAACCCGGTAACTTGCTCCGCCCCGGACGCGAGGTCAACAAT
CTGTTACTACGTCCGGTGTACTCTCGGCACCATCCCTTTTACCCTCCCCT
CCCTTAGTGGACGGGTCGGACAAACACAGCAACATCATGAGCGGTACTAC
GGTATGAGGGGGGTACCCCCATTTTCATTCGCAGCTTTAGGCCACCTGCG
CGAGCGGTTCTGCGCCGCCGCAAAACCTCCCCCTAATATTTTACCTTCTG
CCGTAGCCCGGGTCTCGTCAGGCATATCTATAGTATCGGTCGCTGTGCTG
TAGTAGATTGCCGTGGCGTGAGTATTGTTCCTTAAGTTCAACGCAATTGG
GAATATTTAGCTTATCTTACATTAAAAAAACTCGAGCGGGTCAACCTTAT
GTTTGCCGTCATCGTCAAATTCCTTAATTGTAGGGTGAAGAAGATCGCAG
GCGCACCCAA
back to top

Coding sequence (CDS) from alignment at D-dudresnayi_contig10000:7700..10209-

>mRNA_D-dudresnayi_contig10000.37.1 ID=mRNA_D-dudresnayi_contig10000.37.1|Name=mRNA_D-dudresnayi_contig10000.37.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at D-dudresnayi_contig10000:7700..10209- (Desmarestia dudresnayi DdudBR16 monoicous)
ATGTTTGTTCCTGCACAGGAGGAATCTGCACGCCGAAGAGAAGCCTTGCG
GCTCCAGACGGAGACTGAAGTGCGCAACAAAAGGATGGAAATCGAGCGAG
CTATGGACACCGAAAAGCTTCAGATGTTTGTTCCTGCACAGGAGGAATCT
GCACGCCGAAGAGAAGCCTTGCGGCTCCAGACGGAGACTGAAGTGCGCAA
CAAAAGGATGGAAATCGAGCGAGCTATGGACACCGAAAAGCTTCAGATGG
ATATAGAGCGGGTACAGGCGGAGGTGCAGGCTAAGGTCGCTGCCGAGGCG
GACAACGAAGACATGGTCCTGAGAAAAATACGTGCTCAGATGGATATAGA
GCGGGTACAGGCGGAGGTGCAGGCTAAGGTCGCTGCCGAGGCGGACAACG
AAGACATGGTCCTGAGAAAAATACGTGCTCAGGGTGAAGAAGATCGCAGG
CGCACCCAAGGTGAAGAAGATCGCAGGCGCACCCAA
back to top