mRNA_D-dudresnayi_contig10.26.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10.26.1
Unique NamemRNA_D-dudresnayi_contig10.26.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
BLAST of mRNA_D-dudresnayi_contig10.26.1 vs. uniprot
Match: A0A0R3PIL2_ANGCS (ATP-grasp domain-containing protein n=1 Tax=Angiostrongylus costaricensis TaxID=334426 RepID=A0A0R3PIL2_ANGCS)

HSP 1 Score: 124 bits (312), Expect = 1.800e-35
Identity = 56/77 (72.73%), Postives = 70/77 (90.91%), Query Frame = 1
Query:   10 IIPGFEGEIRDEEHAVQLANEVGYPVMLKASAGGGGKGMRVAYNDAETREGYNLSKAEARSSFGDDRMLIERFIEDP 240
            +IPGF+GEI DE+  V++AN++GYPVM+KASAGGGGKGMR+A+ND E REGY LSK EARSSFGDDRML+E+FI++P
Sbjct:   18 MIPGFDGEIDDEDMCVKVANDIGYPVMIKASAGGGGKGMRIAWNDKEAREGYRLSKQEARSSFGDDRMLVEKFIDNP 94          
BLAST of mRNA_D-dudresnayi_contig10.26.1 vs. uniprot
Match: A0A3R6WV71_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WV71_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.150e-33
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 1
Query:   13 IPGFEGEIRDEEHAVQLANEVGYPVMLKASAGGGGKGMRVAYNDAETREGYNLSKAEARSSFGDDRMLIERFIEDP 240
            IPGF+G I+DE+ AV++A EVGYPVM+KASAGGGGKGMRVAYNDAE REGY LSK EA +SFGDDRM IE+FIEDP
Sbjct:  169 IPGFQGVIQDEDEAVKVAREVGYPVMVKASAGGGGKGMRVAYNDAEVREGYRLSKEEAANSFGDDRMFIEKFIEDP 244          
BLAST of mRNA_D-dudresnayi_contig10.26.1 vs. uniprot
Match: A0A0B6YHQ6_9EUPU (CbamoylP_synth_lsu-like_ATP-bd domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YHQ6_9EUPU)

HSP 1 Score: 119 bits (297), Expect = 3.680e-33
Identity = 53/77 (68.83%), Postives = 68/77 (88.31%), Query Frame = 1
Query:   10 IIPGFEGEIRDEEHAVQLANEVGYPVMLKASAGGGGKGMRVAYNDAETREGYNLSKAEARSSFGDDRMLIERFIEDP 240
            +IPG++GEI DE+H V+++N++GYPVM+KASAGGGGKGMRVA+ND E   GY LSK EA SSFGDDRML+E+FI++P
Sbjct:    3 MIPGYDGEITDEKHCVEISNQIGYPVMIKASAGGGGKGMRVAWNDKEAVIGYRLSKQEAASSFGDDRMLVEKFIDNP 79          
BLAST of mRNA_D-dudresnayi_contig10.26.1 vs. uniprot
Match: A0A183E923_9BILA (Uncharacterized protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183E923_9BILA)

HSP 1 Score: 123 bits (308), Expect = 2.170e-32
Identity = 54/77 (70.13%), Postives = 69/77 (89.61%), Query Frame = 1
Query:   10 IIPGFEGEIRDEEHAVQLANEVGYPVMLKASAGGGGKGMRVAYNDAETREGYNLSKAEARSSFGDDRMLIERFIEDP 240
            +IPG++GEI DE   V++ANE+GYPVM+KASAGGGGKGMR+A+ND E R+GY LSK EA+SSFGDDRML+E+FI++P
Sbjct:  175 MIPGYDGEINDENECVKVANEIGYPVMIKASAGGGGKGMRIAWNDKEARDGYRLSKQEAKSSFGDDRMLVEKFIDNP 251          
BLAST of mRNA_D-dudresnayi_contig10.26.1 vs. uniprot
Match: A0A0M3K7G7_ANISI (Uncharacterized protein n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3K7G7_ANISI)

HSP 1 Score: 124 bits (310), Expect = 2.720e-32
Identity = 55/77 (71.43%), Postives = 69/77 (89.61%), Query Frame = 1
Query:   10 IIPGFEGEIRDEEHAVQLANEVGYPVMLKASAGGGGKGMRVAYNDAETREGYNLSKAEARSSFGDDRMLIERFIEDP 240
            +IPG++GEI DEE  V++ANE+GYPVM+KASAGGGGKGMR+A+ND E R GY LSK EA+SSFGDDRML+E+FI++P
Sbjct:  157 MIPGYDGEIDDEEQCVKVANEIGYPVMIKASAGGGGKGMRIAWNDTEARNGYRLSKQEAKSSFGDDRMLVEKFIDNP 233          
BLAST of mRNA_D-dudresnayi_contig10.26.1 vs. uniprot
Match: A0A3R6ZUE5_9STRA (Propionyl-CoA carboxylase alpha chain, mitochondrial n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZUE5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.970e-32
Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    1 QCFIIPGFEGEIRDEEHAVQLANEVGYPVMLKASAGGGGKGMRVAYNDAETREGYNLSKAEARSSFGDDRMLIERFIEDP 240
            Q   IPGF+G I+DE+ AV++A EVGYPVM+KASAGGGGKGMRVAYNDAE REGY LSK EA +SFGDDRM IE+FIEDP
Sbjct:  166 QVNTIPGFQGVIQDEDEAVKVAREVGYPVMVKASAGGGGKGMRVAYNDAEVREGYRLSKEEAANSFGDDRMFIEKFIEDP 245          
BLAST of mRNA_D-dudresnayi_contig10.26.1 vs. uniprot
Match: A0A397AKQ3_9STRA (Propionyl-CoA carboxylase alpha chain, mitochondrial (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AKQ3_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.790e-32
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 1
Query:   13 IPGFEGEIRDEEHAVQLANEVGYPVMLKASAGGGGKGMRVAYNDAETREGYNLSKAEARSSFGDDRMLIERFIEDP 240
            IPGF+G I+DE+ AV++A EVGYPVM+KASAGGGGKGMRVAYNDAE REGY LSK EA +SFGDDRM IE+FIEDP
Sbjct:  159 IPGFQGVIQDEDEAVKVAREVGYPVMVKASAGGGGKGMRVAYNDAEVREGYRLSKEEAANSFGDDRMFIEKFIEDP 234          
BLAST of mRNA_D-dudresnayi_contig10.26.1 vs. uniprot
Match: A0A485K927_9STRA (Propionyl-CoA carboxylase alpha chain, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K927_9STRA)

HSP 1 Score: 126 bits (316), Expect = 5.600e-32
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 1
Query:   13 IPGFEGEIRDEEHAVQLANEVGYPVMLKASAGGGGKGMRVAYNDAETREGYNLSKAEARSSFGDDRMLIERFIEDP 240
            IPGF+G I+DE  AV++AN++GYPVM+KASAGGGGKGMRVAYNDAE REGY LSK EA +SFGDDRM IE+FIEDP
Sbjct:  158 IPGFQGVIQDETEAVKVANDIGYPVMVKASAGGGGKGMRVAYNDAEVREGYRLSKEEAANSFGDDRMFIEKFIEDP 233          
BLAST of mRNA_D-dudresnayi_contig10.26.1 vs. uniprot
Match: A0A067D9C1_SAPPC (Propionyl-CoA carboxylase alpha chain, mitochondrial n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D9C1_SAPPC)

HSP 1 Score: 126 bits (316), Expect = 5.690e-32
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 1
Query:   13 IPGFEGEIRDEEHAVQLANEVGYPVMLKASAGGGGKGMRVAYNDAETREGYNLSKAEARSSFGDDRMLIERFIEDP 240
            IPGF+G I+DE  AV++AN++GYPVM+KASAGGGGKGMRVAYNDAE REGY LSK EA +SFGDDRM IE+FIEDP
Sbjct:  158 IPGFQGVIQDETEAVKVANDIGYPVMVKASAGGGGKGMRVAYNDAEVREGYRLSKEEAANSFGDDRMFIEKFIEDP 233          
BLAST of mRNA_D-dudresnayi_contig10.26.1 vs. uniprot
Match: A0A024T8T8_9STRA (Propionyl-CoA carboxylase alpha chain, mitochondrial n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024T8T8_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.440e-31
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 1
Query:   13 IPGFEGEIRDEEHAVQLANEVGYPVMLKASAGGGGKGMRVAYNDAETREGYNLSKAEARSSFGDDRMLIERFIEDP 240
            IPG++G I+DEE AV++A ++GYPVM+KASAGGGGKGMRVAYNDAE REGY LSK EA +SFGDDRM IE+FIEDP
Sbjct:  158 IPGYQGVIQDEEEAVKVARDIGYPVMVKASAGGGGKGMRVAYNDAEVREGYRLSKEEAANSFGDDRMFIEKFIEDP 233          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0R3PIL2_ANGCS1.800e-3572.73ATP-grasp domain-containing protein n=1 Tax=Angios... [more]
A0A3R6WV71_9STRA1.150e-3378.95Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A0B6YHQ6_9EUPU3.680e-3368.83CbamoylP_synth_lsu-like_ATP-bd domain-containing p... [more]
A0A183E923_9BILA2.170e-3270.13Uncharacterized protein n=1 Tax=Gongylonema pulchr... [more]
A0A0M3K7G7_ANISI2.720e-3271.43Uncharacterized protein n=1 Tax=Anisakis simplex T... [more]
A0A3R6ZUE5_9STRA2.970e-3276.25Propionyl-CoA carboxylase alpha chain, mitochondri... [more]
A0A397AKQ3_9STRA3.790e-3278.95Propionyl-CoA carboxylase alpha chain, mitochondri... [more]
A0A485K927_9STRA5.600e-3277.63Propionyl-CoA carboxylase alpha chain, mitochondri... [more]
A0A067D9C1_SAPPC5.690e-3277.63Propionyl-CoA carboxylase alpha chain, mitochondri... [more]
A0A024T8T8_9STRA1.440e-3176.32Propionyl-CoA carboxylase alpha chain, mitochondri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10contigD-dudresnayi_contig10:73407..73846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue6.4e-27
Seed eggNOG ortholog112098.XP_008620103.1
KEGG rclassRC00064,RC00090,RC00097,RC00367,RC00609,RC00942
KEGG koko:K01965,ko:K01968,ko:K14755
KEGG ReactionR00910,R00912,R01164,R01859,R01991,R03286,R04138
KEGG Pathwayko00280,ko00330,ko00340,ko00410,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00330,map00340,map00410,map00630,map00640,map01100,map01120,map01130,map01200
KEGG ModuleM00036,M00373,M00741
EggNOG free text desc.CoA carboxylase activity
EggNOG OGsCOG4770@1,KOG0238@2759
EC6.3.2.11,6.4.1.3,6.4.1.4
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionpropionyl-CoA carboxylase, alpha subunit
Ec32 orthologEc-01_010970.3
Exons3
Model size244
Cds size243
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10.26.1prot_D-dudresnayi_contig10.26.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10 73407..73846 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927500.250467-CDS-D-dudresnayi_contig10:73406..734991622927500.250467-CDS-D-dudresnayi_contig10:73406..73499Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 73407..73499 -
1690556777.962674-CDS-D-dudresnayi_contig10:73406..734991690556777.962674-CDS-D-dudresnayi_contig10:73406..73499Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 73407..73499 -
1622927500.2673967-CDS-D-dudresnayi_contig10:73588..736701622927500.2673967-CDS-D-dudresnayi_contig10:73588..73670Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 73589..73670 -
1690556777.995927-CDS-D-dudresnayi_contig10:73588..736701690556777.995927-CDS-D-dudresnayi_contig10:73588..73670Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 73589..73670 -
1622927500.2822454-CDS-D-dudresnayi_contig10:73778..738461622927500.2822454-CDS-D-dudresnayi_contig10:73778..73846Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 73779..73846 -
1690556778.0119088-CDS-D-dudresnayi_contig10:73778..738461690556778.0119088-CDS-D-dudresnayi_contig10:73778..73846Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 73779..73846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10.26.1

>prot_D-dudresnayi_contig10.26.1 ID=prot_D-dudresnayi_contig10.26.1|Name=mRNA_D-dudresnayi_contig10.26.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=81bp
QCFIIPGFEGEIRDEEHAVQLANEVGYPVMLKASAGGGGKGMRVAYNDAE
TREGYNLSKAEARSSFGDDRMLIERFIEDPH
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mRNA from alignment at D-dudresnayi_contig10:73407..73846-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10.26.1 ID=mRNA_D-dudresnayi_contig10.26.1|Name=mRNA_D-dudresnayi_contig10.26.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=440bp|location=Sequence derived from alignment at D-dudresnayi_contig10:73407..73846- (Desmarestia dudresnayi DdudBR16 monoicous)
CAATGCTTCATCATTCCTGGATTCGAGGGAGAGATCCGCGACGAGGAGCA CGCTGTCCAGCTGGCCAAGTAAGCACTTACCTACTATATGTACCGATATT GGTGCTATGTGTTCGTAACCTTTATGGCGTTCTACTTACTTTGTGTTTAT TTGCTGTGCATATTACTGGAACACAGCGAGGTGGGCTACCCCGTCATGCT CAAGGCATCTGCTGGTGGCGGAGGCAAAGGTATGCGCGTTGCCTATAACG ATGCCGAGGTAAGACGCACATTTCGTTAACCTATATTTTTAGTATGTATA AAGCTAAAACCTAACTCAAACATGGGTGAAAATATTGTTCCCACCAGACC AGAGAGGGTTATAACCTCAGTAAGGCGGAGGCCCGCAGCTCCTTCGGTGA CGACCGCATGTTGATCGAGCGGTTCATCGAGGACCCGCAC
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10:73407..73846-

>mRNA_D-dudresnayi_contig10.26.1 ID=mRNA_D-dudresnayi_contig10.26.1|Name=mRNA_D-dudresnayi_contig10.26.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at D-dudresnayi_contig10:73407..73846- (Desmarestia dudresnayi DdudBR16 monoicous)
CAATGCTTCATCATTCCTGGATTCGAGGGAGAGATCCGCGACGAGGAGCA
CGCTGTCCAGCTGGCCAACAATGCTTCATCATTCCTGGATTCGAGGGAGA
GATCCGCGACGAGGAGCACGCTGTCCAGCTGGCCAACGAGGTGGGCTACC
CCGTCATGCTCAAGGCATCTGCTGGTGGCGGAGGCAAAGGTATGCGCGTT
GCCTATAACGATGCCGAGCGAGGTGGGCTACCCCGTCATGCTCAAGGCAT
CTGCTGGTGGCGGAGGCAAAGGTATGCGCGTTGCCTATAACGATGCCGAG
ACCAGAGAGGGTTATAACCTCAGTAAGGCGGAGGCCCGCAGCTCCTTCGG
TGACGACCGCATGTTGATCGAGCGGTTCATCGAGGACCCGCACACCAGAG
AGGGTTATAACCTCAGTAAGGCGGAGGCCCGCAGCTCCTTCGGTGACGAC
CGCATGTTGATCGAGCGGTTCATCGAGGACCCGCAC
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