mRNA_D-dudresnayi_contig10.25.1 (mRNA) Desmarestia dudresnayi DdudBR16 monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dudresnayi_contig10.25.1
Unique NamemRNA_D-dudresnayi_contig10.25.1
TypemRNA
OrganismDesmarestia dudresnayi DdudBR16 monoicous (Desmarestia dudresnayi DdudBR16 monoicous)
Homology
[Close]
BLAST of mRNA_D-dudresnayi_contig10.25.1 vs. uniprot
Match: A0A482UWH2_9ARCH (Biotin carboxylation domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UWH2_9ARCH)

HSP 1 Score: 103 bits (256), Expect = 6.490e-27
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:   49 SRVYAEDPLRGFLPSIGPLITYKEPLQVVNDPEIGTVRIDTGVFEGGTISMYYDPMISKLCTWAPTR 249
            SRVYAE+P R FLPSIGPLITYKEP    +D   G +RIDTGV+EGG IS +YDPMI+KLCTWAPTR
Sbjct:    2 SRVYAEEPRRNFLPSIGPLITYKEPRTFTSDE--GVLRIDTGVYEGGVISPFYDPMIAKLCTWAPTR 66
[Close]
BLAST of mRNA_D-dudresnayi_contig10.25.1 vs. uniprot
Match: A0A5S3PBD3_9RHOB (Propionyl-CoA carboxylase n=1 Tax=Sulfitobacter sabulilitoris TaxID=2562655 RepID=A0A5S3PBD3_9RHOB)

HSP 1 Score: 106 bits (264), Expect = 6.910e-25
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:   31 KGSAIESRVYAEDPLRGFLPSIGPLITYKEPLQVVNDPEIGTVRIDTGVFEGGTISMYYDPMISKLCTWAPTR 249
            KG AIE+R+YAEDP RGFLPSIG L  Y+ P +V +D  I  VR DTGVFEGG ISMYYDPMI+KLCTWAPTR
Sbjct:  331 KGWAIENRLYAEDPYRGFLPSIGRLTRYRPPAEVGSDHAI--VRNDTGVFEGGEISMYYDPMIAKLCTWAPTR 401
[Close]
BLAST of mRNA_D-dudresnayi_contig10.25.1 vs. uniprot
Match: A0A7G3CYE8_9RHOB (Propionyl-CoA carboxylase n=1 Tax=Carideicomes alvinocaridis TaxID=2541728 RepID=A0A7G3CYE8_9RHOB)

HSP 1 Score: 106 bits (264), Expect = 6.910e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:   19 HLTAKGSAIESRVYAEDPLRGFLPSIGPLITYKEPLQVVNDPEIGTVRIDTGVFEGGTISMYYDPMISKLCTWAPTR 249
            +LT  G AIE+R+YAEDP RGFLPSIG L  Y+ P +V  D  +  VR DTGVFEGG ISMYYDPMI+KLCTWAPTR
Sbjct:  327 NLTINGWAIENRLYAEDPYRGFLPSIGRLTRYRPPEEVSLDTHV--VRNDTGVFEGGEISMYYDPMIAKLCTWAPTR 401
[Close]
BLAST of mRNA_D-dudresnayi_contig10.25.1 vs. uniprot
Match: A0A1H9EGI5_9RHOB (Propionyl-CoA carboxylase n=1 Tax=Thalassobius taeanensis TaxID=657014 RepID=A0A1H9EGI5_9RHOB)

HSP 1 Score: 106 bits (264), Expect = 6.910e-25
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   34 GSAIESRVYAEDPLRGFLPSIGPLITYKEPLQVVNDPEIGTVRIDTGVFEGGTISMYYDPMISKLCTWAPTR 249
            G A+ESR+YAEDP RGFLPSIG L  Y+ P +VV D  +  VR DTGVFEGG ISMYYDPMI+KLCTWAPTR
Sbjct:  332 GWAMESRLYAEDPYRGFLPSIGRLSRYRPPAEVVEDNRV--VRNDTGVFEGGEISMYYDPMIAKLCTWAPTR 401
[Close]
BLAST of mRNA_D-dudresnayi_contig10.25.1 vs. uniprot
Match: A0A345QQ84_9RHOB (Propionyl-CoA carboxylase n=1 Tax=Sulfitobacter sp. SK012 TaxID=1389005 RepID=A0A345QQ84_9RHOB)

HSP 1 Score: 105 bits (263), Expect = 9.440e-25
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   34 GSAIESRVYAEDPLRGFLPSIGPLITYKEPLQVVNDPEIGTVRIDTGVFEGGTISMYYDPMISKLCTWAPTR 249
            G AIE+R+YAEDP RGFLPSIG L  Y+ P +VV D  +  VR DTGV+EGG ISMYYDPMI+KLCTWAPTR
Sbjct:  332 GWAIENRLYAEDPYRGFLPSIGRLTRYRPPAEVVEDTHV--VRNDTGVYEGGEISMYYDPMIAKLCTWAPTR 401
[Close]
BLAST of mRNA_D-dudresnayi_contig10.25.1 vs. uniprot
Match: A0A3T0N4A1_9RHOB (Propionyl-CoA carboxylase n=6 Tax=Rhodobacterales TaxID=204455 RepID=A0A3T0N4A1_9RHOB)

HSP 1 Score: 105 bits (262), Expect = 1.290e-24
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   34 GSAIESRVYAEDPLRGFLPSIGPLITYKEPLQVVNDPEIGTVRIDTGVFEGGTISMYYDPMISKLCTWAPTR 249
            G AIE+R+YAEDP RGFLPSIG L  Y+ P +VV +  I  VR DTGVFEGG ISMYYDPMI+KLCTWAPTR
Sbjct:  332 GWAIENRLYAEDPYRGFLPSIGRLSRYRPPAEVVEETHI--VRNDTGVFEGGEISMYYDPMIAKLCTWAPTR 401
[Close]
BLAST of mRNA_D-dudresnayi_contig10.25.1 vs. uniprot
Match: A0A7C9L713_9RHOB (Propionyl-CoA carboxylase n=2 Tax=Sediminimonas qiaohouensis TaxID=552061 RepID=A0A7C9L713_9RHOB)

HSP 1 Score: 105 bits (262), Expect = 1.290e-24
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:   22 LTAKGSAIESRVYAEDPLRGFLPSIGPLITYKEPLQVVNDPEIGTVRIDTGVFEGGTISMYYDPMISKLCTWAPTR 249
            +   G AIESR+YAEDP RGFLPSIG L  Y+ P + V+D     VR DTGVFEGG ISMYYDPMI+KLCTWAPTR
Sbjct:  328 IALNGWAIESRLYAEDPYRGFLPSIGRLTRYRPPQETVSDT--AKVRNDTGVFEGGEISMYYDPMIAKLCTWAPTR 401
[Close]
BLAST of mRNA_D-dudresnayi_contig10.25.1 vs. uniprot
Match: A0A357FGP8_9RHOB (Propionyl-CoA carboxylase n=5 Tax=Rhodobacterales TaxID=204455 RepID=A0A357FGP8_9RHOB)

HSP 1 Score: 104 bits (260), Expect = 2.420e-24
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   34 GSAIESRVYAEDPLRGFLPSIGPLITYKEPLQVVNDPEIGTVRIDTGVFEGGTISMYYDPMISKLCTWAPTR 249
            G AIE+R+YAEDP RGFLPSIG L  Y+ P+++  D  +  +R DTGVFEGG I+MYYDPMI+KLCTWAPTR
Sbjct:  332 GWAIENRLYAEDPYRGFLPSIGRLTRYRPPIEIATDTHV--IRNDTGVFEGGEITMYYDPMIAKLCTWAPTR 401
[Close]
BLAST of mRNA_D-dudresnayi_contig10.25.1 vs. uniprot
Match: A0A1I6YBX8_9RHOB (Propionyl-CoA carboxylase n=4 Tax=Rhodobacterales TaxID=204455 RepID=A0A1I6YBX8_9RHOB)

HSP 1 Score: 104 bits (259), Expect = 3.290e-24
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   34 GSAIESRVYAEDPLRGFLPSIGPLITYKEPLQVVNDPEIGTVRIDTGVFEGGTISMYYDPMISKLCTWAPTR 249
            G AIE+R+YAEDP RGFLPSIG L  Y+ P +V +D  +  VR DTGV+EGG ISMYYDPMI+KLCTWAPTR
Sbjct:  332 GWAIENRLYAEDPYRGFLPSIGRLSRYRPPAEVADDSHV--VRNDTGVYEGGEISMYYDPMIAKLCTWAPTR 401
[Close]
BLAST of mRNA_D-dudresnayi_contig10.25.1 vs. uniprot
Match: A0A2N3BN15_9PROT (Propionyl-CoA carboxylase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2N3BN15_9PROT)

HSP 1 Score: 104 bits (259), Expect = 3.290e-24
Identity = 51/76 (67.11%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:   22 LTAKGSAIESRVYAEDPLRGFLPSIGPLITYKEPLQVVNDPEIGTVRIDTGVFEGGTISMYYDPMISKLCTWAPTR 249
            L   G A+ESR+YAEDP RGFLPSIG L  Y+ P++  +    G VR DTGVFEGG ISMYYDPMI+KLCTWAPTR
Sbjct:  328 LKINGWAMESRLYAEDPYRGFLPSIGRLTRYRPPVEAAH--ATGVVRNDTGVFEGGEISMYYDPMIAKLCTWAPTR 401
The following BLAST results are available for this feature:
BLAST of mRNA_D-dudresnayi_contig10.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482UWH2_9ARCH6.490e-2773.13Biotin carboxylation domain-containing protein n=1... [more]
A0A5S3PBD3_9RHOB6.910e-2572.60Propionyl-CoA carboxylase n=1 Tax=Sulfitobacter sa... [more]
A0A7G3CYE8_9RHOB6.910e-2568.83Propionyl-CoA carboxylase n=1 Tax=Carideicomes alv... [more]
A0A1H9EGI5_9RHOB6.910e-2572.22Propionyl-CoA carboxylase n=1 Tax=Thalassobius tae... [more]
A0A345QQ84_9RHOB9.440e-2570.83Propionyl-CoA carboxylase n=1 Tax=Sulfitobacter sp... [more]
A0A3T0N4A1_9RHOB1.290e-2472.22Propionyl-CoA carboxylase n=6 Tax=Rhodobacterales ... [more]
A0A7C9L713_9RHOB1.290e-2468.42Propionyl-CoA carboxylase n=2 Tax=Sediminimonas qi... [more]
A0A357FGP8_9RHOB2.420e-2466.67Propionyl-CoA carboxylase n=5 Tax=Rhodobacterales ... [more]
A0A1I6YBX8_9RHOB3.290e-2469.44Propionyl-CoA carboxylase n=4 Tax=Rhodobacterales ... [more]
A0A2N3BN15_9PROT3.290e-2467.11Propionyl-CoA carboxylase n=2 Tax=Alphaproteobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dudresnayi_contig10contigD-dudresnayi_contig10:72341..72737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Desmarestia dudresnayi DdudBR16 monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score108.6
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog1123247.AUIJ01000001_gene1641
Preferred namepccA
KEGG rclassRC00097,RC00609
KEGG koko:K01965
KEGG ReactionR01859
KEGG Pathwayko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200
KEGG ModuleM00373,M00741
EggNOG free text desc.Acetyl propionyl-CoA carboxylase alpha subunit
EggNOG OGs1P6RE@1224,2TRC2@28211,COG4770@1,COG4770@2
Ec32 ortholog descriptionpropionyl-CoA carboxylase, alpha subunit
Ec32 orthologEc-01_010970.1
EC6.4.1.3
COG Functional cat.I
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927500.1937826-CDS-D-dudresnayi_contig10:72340..725151622927500.1937826-CDS-D-dudresnayi_contig10:72340..72515Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 72341..72515 -
1690556777.932403-CDS-D-dudresnayi_contig10:72340..725151690556777.932403-CDS-D-dudresnayi_contig10:72340..72515Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 72341..72515 -
1622927500.2105854-CDS-D-dudresnayi_contig10:72660..727371622927500.2105854-CDS-D-dudresnayi_contig10:72660..72737Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 72661..72737 -
1690556777.9519844-CDS-D-dudresnayi_contig10:72660..727371690556777.9519844-CDS-D-dudresnayi_contig10:72660..72737Desmarestia dudresnayi DdudBR16 monoicousCDSD-dudresnayi_contig10 72661..72737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dudresnayi_contig10.25.1prot_D-dudresnayi_contig10.25.1Desmarestia dudresnayi DdudBR16 monoicouspolypeptideD-dudresnayi_contig10 72341..72737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dudresnayi_contig10.25.1

>prot_D-dudresnayi_contig10.25.1 ID=prot_D-dudresnayi_contig10.25.1|Name=mRNA_D-dudresnayi_contig10.25.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=polypeptide|length=84bp
RLTSAPHLTAKGSAIESRVYAEDPLRGFLPSIGPLITYKEPLQVVNDPEI
GTVRIDTGVFEGGTISMYYDPMISKLCTWAPTR*
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mRNA from alignment at D-dudresnayi_contig10:72341..72737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dudresnayi_contig10.25.1 ID=mRNA_D-dudresnayi_contig10.25.1|Name=mRNA_D-dudresnayi_contig10.25.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=mRNA|length=397bp|location=Sequence derived from alignment at D-dudresnayi_contig10:72341..72737- (Desmarestia dudresnayi DdudBR16 monoicous)
CGCCTGACCAGCGCGCCCCACCTCACCGCCAAGGGCAGCGCTATTGAGAG
TCGTGTGTATGCTGAGGATCCTCTCAGGTGCGTGTCTGTTCCCTGTCTGT
ATTGCTGTATGTACTCCTGTCCTTCCCAACTTCTGCTCTCTTTACTTTAC
TTTGCTGTGATCCCCACTGAGCCTAACCCTCTCTCCCCCCTCACTCTTCC
TGTCTGTCTGCTACTCGCACAGAGGTTTCCTGCCCTCGATTGGCCCCCTG
ATCACTTACAAGGAGCCCCTGCAGGTGGTCAACGACCCCGAGATCGGCAC
CGTGCGCATCGACACCGGCGTGTTCGAGGGCGGCACCATCTCCATGTACT
ACGACCCCATGATCTCCAAGCTCTGCACCTGGGCGCCCACCAGGTAG
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Coding sequence (CDS) from alignment at D-dudresnayi_contig10:72341..72737-

>mRNA_D-dudresnayi_contig10.25.1 ID=mRNA_D-dudresnayi_contig10.25.1|Name=mRNA_D-dudresnayi_contig10.25.1|organism=Desmarestia dudresnayi DdudBR16 monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at D-dudresnayi_contig10:72341..72737- (Desmarestia dudresnayi DdudBR16 monoicous)
CGCCTGACCAGCGCGCCCCACCTCACCGCCAAGGGCAGCGCTATTGAGAG
TCGTGTGTATGCTGAGGATCCTCTCAGCGCCTGACCAGCGCGCCCCACCT
CACCGCCAAGGGCAGCGCTATTGAGAGTCGTGTGTATGCTGAGGATCCTC
TCAGAGGTTTCCTGCCCTCGATTGGCCCCCTGATCACTTACAAGGAGCCC
CTGCAGGTGGTCAACGACCCCGAGATCGGCACCGTGCGCATCGACACCGG
CGTGTTCGAGGGCGGCACCATCTCCATGTACTACGACCCCATGATCTCCA
AGCTCTGCACCTGGGCGCCCACCAGGTAGAGGTTTCCTGCCCTCGATTGG
CCCCCTGATCACTTACAAGGAGCCCCTGCAGGTGGTCAACGACCCCGAGA
TCGGCACCGTGCGCATCGACACCGGCGTGTTCGAGGGCGGCACCATCTCC
ATGTACTACGACCCCATGATCTCCAAGCTCTGCACCTGGGCGCCCACCAG
GTAG
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