mRNA_C-australica_Contig_104.11.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_104.11.1
Unique NamemRNA_C-australica_Contig_104.11.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_104.11.1 vs. uniprot
Match: D8LMJ3_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ3_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.940e-16
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   28 VENMTRVLDIKDVTGKAALHHACADVEERLSVVTSLLQAKAQVNIRDAQGNSPLHIACRY 207
            V ++  +LD +D +GKAALHHA AD EER  VV +LL AK+QVNIRDA+GNSPLHIAC++
Sbjct:  333 VSDLQAMLDQRDFSGKAALHHAVADTEERHQVVQNLLTAKSQVNIRDARGNSPLHIACQH 392
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BLAST of mRNA_C-australica_Contig_104.11.1 vs. uniprot
Match: A0A6H5K7M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.090e-10
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   46 VLDIKDVTGKAALHHACADVEERLSVVTSLLQAKAQ---VNIRDAQGNSPLHIACRYVKLAPFSS 231
            +LD +D +GKAALHHA AD EER  VV +LL AK+Q   V   DA+G +PLH ACR + ++  S+
Sbjct:  286 MLDQRDFSGKAALHHAVADTEERHQVVQNLLAAKSQGGMVTAEDARGWTPLHYACRALAMSESST 350
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BLAST of mRNA_C-australica_Contig_104.11.1 vs. uniprot
Match: UPI0006B0DDD4 (tyrosine-protein kinase shark-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0DDD4)

HSP 1 Score: 52.4 bits (124), Expect = 5.220e-6
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   16 VGQGVENMTRVLDIKDVTGKAALHHACADVEERLSVVTSLLQAKAQVNIRDAQGNSPLHIACR 204
            VG+ +++  R LD K+  G++A+H AC  +     ++  LL A A VNI+DA+G +PLH ACR
Sbjct:  157 VGELLKSCYRSLDAKNQEGQSAMHLAC--INGNNEILDMLLDAGANVNIKDAKGLTPLHYACR 217
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BLAST of mRNA_C-australica_Contig_104.11.1 vs. uniprot
Match: A0A6A0GSJ9_HYAAZ (Uncharacterized protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GSJ9_HYAAZ)

HSP 1 Score: 48.9 bits (115), Expect = 8.680e-5
Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:   46 VLDIKDVTGKAALHHACADVEERLSVVTSLLQAKAQVNIRDAQGNSPLHIACRYVKLAP 222
            V+D+ DV G   LH+A  ++      +T+L+ AKA VN+R+ +G+SPLH+       AP
Sbjct:  102 VVDLPDVDGNTPLHYAVKELNS--DAITNLIDAKANVNLRNDEGDSPLHLLAYAAATAP 158
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_104.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMJ3_ECTSI1.940e-1665.00Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K7M8_9PHAE4.090e-1052.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0006B0DDD45.220e-642.86tyrosine-protein kinase shark-like n=1 Tax=Limulus... [more]
A0A6A0GSJ9_HYAAZ8.680e-538.98Uncharacterized protein n=1 Tax=Hyalella azteca Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_104contigC-australica_Contig_104:41529..42079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LMJ3
PFAMsAnk_2,Ank_3,Ank_5,PID,PKD_channel,SAM_1
Model size237
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00901,ko:K21413,ko:K21952
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515
Exons3
Evalue3.19e-17
EggNOG OGsCOG0666@1|root,KOG3599@1|root,KOG0507@2759|Eukaryota,KOG3599@2759|Eukaryota
EC2.7.1.107
Descriptiondetection of mechanical stimulus
Cds size237
COG categoryE
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586777.1311061-CDS-C-australica_Contig_104:41528..415881682586777.1311061-CDS-C-australica_Contig_104:41528..41588Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 41529..41588 +
1682586777.1485949-CDS-C-australica_Contig_104:41668..417611682586777.1485949-CDS-C-australica_Contig_104:41668..41761Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 41669..41761 +
1682586777.1623738-CDS-C-australica_Contig_104:41995..420791682586777.1623738-CDS-C-australica_Contig_104:41995..42079Chrysoparadoxa australica CS_1217CDSC-australica_Contig_104 41996..42079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_104.11.1prot_C-australica_Contig_104.11.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_104 41529..42079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_104.11.1

>prot_C-australica_Contig_104.11.1 ID=prot_C-australica_Contig_104.11.1|Name=mRNA_C-australica_Contig_104.11.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=79bp
DSVNSVGQGVENMTRVLDIKDVTGKAALHHACADVEERLSVVTSLLQAKA
QVNIRDAQGNSPLHIACRYVKLAPFSSE*
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mRNA from alignment at C-australica_Contig_104:41529..42079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_104.11.1 ID=mRNA_C-australica_Contig_104.11.1|Name=mRNA_C-australica_Contig_104.11.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=551bp|location=Sequence derived from alignment at C-australica_Contig_104:41529..42079+ (Chrysoparadoxa australica CS_1217)
GATAGTGTCAACTCTGTTGGGCAAGGTGTTGAGAACATGACAAGAGTACT
GGACATCAAGGTTAAAATGAAAACTAACAAATTGACAGGTGGAGCCCATC
ATCCAAATGTCTCTTATCAATGTGTTTCTTATTCTCTTAGGACGTAACGG
GCAAGGCAGCTTTACATCATGCATGTGCTGACGTAGAAGAAAGATTATCG
GTAGTTACATCTTTGCTTCAGGCCAAAGCACAGGTCAGCCAGTTGGCAGT
TGGCAGTCATGGGTTGTCAGCTGACAGTCATCAGTTTGTTTTTCTACGCA
CTACTGACATGCTAATCACTGATCTCAGTAGCGCCTTCCTTCAACTGTGC
CTAGAAAAGTAACCTGTCCTGTCCCTGTGCTAAGTGAAAGCTTATCAATG
CATCATATGGTTGTGCCTAACCAAATCTTAAACATATCACCAAATGGTGT
ATGGTATGTCATGACAGGTTAATATTAGAGATGCTCAAGGCAATTCACCA
CTTCACATAGCATGCCGGTATGTCAAGTTAGCACCGTTTAGCTCCGAGTA
G
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Coding sequence (CDS) from alignment at C-australica_Contig_104:41529..42079+

>mRNA_C-australica_Contig_104.11.1 ID=mRNA_C-australica_Contig_104.11.1|Name=mRNA_C-australica_Contig_104.11.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=237bp|location=Sequence derived from alignment at C-australica_Contig_104:41529..42079+ (Chrysoparadoxa australica CS_1217)
GATAGTGTCAACTCTGTTGGGCAAGGTGTTGAGAACATGACAAGAGTACT
GGACATCAAGGACGTAACGGGCAAGGCAGCTTTACATCATGCATGTGCTG
ACGTAGAAGAAAGATTATCGGTAGTTACATCTTTGCTTCAGGCCAAAGCA
CAGGTTAATATTAGAGATGCTCAAGGCAATTCACCACTTCACATAGCATG
CCGGTATGTCAAGTTAGCACCGTTTAGCTCCGAGTAG
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