mRNA_C-australica_Contig_10321.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10321.2.1
Unique NamemRNA_C-australica_Contig_10321.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10321.2.1 vs. uniprot
Match: A0A353WUV0_9BACT (Alanine racemase n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A353WUV0_9BACT)

HSP 1 Score: 215 bits (547), Expect = 1.080e-66
Identity = 107/126 (84.92%), Postives = 115/126 (91.27%), Query Frame = 1 
Query:    1 KSDIMDIRYVDAGEFIGYGTAYHATRNMKVAVLPLGYSNGYPRAQSNNGYILIKGKKAPITGLINMNLFMVDISHIKDVAVGDEVVLIGRQNNTTINVSSFTNVTQLLNNEMLSRLPAAIPRKAVR 378
            K+DIMDIR+VD GEFIGYGTAY ATRNMK+AVLPLGYSNGYPRA SN G++LI GKKAPI GLINMNLFMVDISHI +V+VGDEVVLIGRQ N TIN+SSFTN TQLLNNEMLSRLPAAIPRK VR
Sbjct:  260 KTDIMDIRHVDEGEFIGYGTAYQATRNMKIAVLPLGYSNGYPRAMSNRGHVLIGGKKAPIVGLINMNLFMVDISHISNVSVGDEVVLIGRQKNNTINISSFTNFTQLLNNEMLSRLPAAIPRKTVR 385
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BLAST of mRNA_C-australica_Contig_10321.2.1 vs. uniprot
Match: A0A1N6G4E6_9BACT (Alanine racemase n=5 Tax=Algoriphagus TaxID=246875 RepID=A0A1N6G4E6_9BACT)

HSP 1 Score: 209 bits (531), Expect = 2.760e-64
Identity = 101/126 (80.16%), Postives = 116/126 (92.06%), Query Frame = 1 
Query:    1 KSDIMDIRYVDAGEFIGYGTAYHATRNMKVAVLPLGYSNGYPRAQSNNGYILIKGKKAPITGLINMNLFMVDISHIKDVAVGDEVVLIGRQNNTTINVSSFTNVTQLLNNEMLSRLPAAIPRKAVR 378
            K+D+MD+R V+AGEFIGYGT+Y A++NMKVAV+PLGYSNGYPRAQSN G++LIKGKKA I GLINMNLFMVD+SHI DV VGDEVVL+GRQNN TIN+SSFT VTQLLNNEMLSRLP+AIPRK V+
Sbjct:  260 KTDVMDVRDVEAGEFIGYGTSYQASQNMKVAVMPLGYSNGYPRAQSNRGHVLIKGKKAQIVGLINMNLFMVDVSHIPDVQVGDEVVLVGRQNNNTINISSFTQVTQLLNNEMLSRLPSAIPRKIVK 385
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BLAST of mRNA_C-australica_Contig_10321.2.1 vs. uniprot
Match: A0A654E712_9BACT (Alanine racemase n=1 Tax=Marinoscillum sp. 108 TaxID=2653151 RepID=A0A654E712_9BACT)

HSP 1 Score: 208 bits (529), Expect = 5.520e-64
Identity = 101/126 (80.16%), Postives = 115/126 (91.27%), Query Frame = 1 
Query:    1 KSDIMDIRYVDAGEFIGYGTAYHATRNMKVAVLPLGYSNGYPRAQSNNGYILIKGKKAPITGLINMNLFMVDISHIKDVAVGDEVVLIGRQNNTTINVSSFTNVTQLLNNEMLSRLPAAIPRKAVR 378
            K+D+MD+R VDAGEFIGYGTAY AT++MKVAVLPLGYSNGYPR QSN G++LIKGKKAPI GLINMNLFMVDISHI +V VGDEVVL+GRQ N TIN+SSFT +TQLLNNEMLSRLP+AIPR+ V+
Sbjct:  260 KTDVMDVRDVDAGEFIGYGTAYQATQDMKVAVLPLGYSNGYPRGQSNRGFVLIKGKKAPIVGLINMNLFMVDISHISNVEVGDEVVLVGRQQNNTINISSFTQLTQLLNNEMLSRLPSAIPRRIVK 385
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BLAST of mRNA_C-australica_Contig_10321.2.1 vs. uniprot
Match: A0A6I7MNI2_9BACT (Alanine racemase n=2 Tax=Cyclobacteriaceae TaxID=563798 RepID=A0A6I7MNI2_9BACT)

HSP 1 Score: 207 bits (528), Expect = 7.800e-64
Identity = 105/126 (83.33%), Postives = 112/126 (88.89%), Query Frame = 1 
Query:    1 KSDIMDIRYVDAGEFIGYGTAYHATRNMKVAVLPLGYSNGYPRAQSNNGYILIKGKKAPITGLINMNLFMVDISHIKDVAVGDEVVLIGRQNNTTINVSSFTNVTQLLNNEMLSRLPAAIPRKAVR 378
            K+DIMDIR V  GEFIGYGT++ AT+NMK+AVLPLGYSNGYPRA SN G +LIKGKKAPI GLINMNLFMVDISHI DVA+GDEVVLIGRQ N  INVSSFTN TQLLNNEMLSRLPAAIPRK VR
Sbjct:  260 KTDIMDIRPVQQGEFIGYGTSFQATQNMKIAVLPLGYSNGYPRALSNRGQVLIKGKKAPIVGLINMNLFMVDISHIDDVALGDEVVLIGRQQNNVINVSSFTNTTQLLNNEMLSRLPAAIPRKVVR 385
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BLAST of mRNA_C-australica_Contig_10321.2.1 vs. uniprot
Match: A0A3D9L585_MARFU (Alanine racemase n=1 Tax=Marinoscillum furvescens DSM 4134 TaxID=1122208 RepID=A0A3D9L585_MARFU)

HSP 1 Score: 206 bits (524), Expect = 3.200e-63
Identity = 99/126 (78.57%), Postives = 114/126 (90.48%), Query Frame = 1 
Query:    1 KSDIMDIRYVDAGEFIGYGTAYHATRNMKVAVLPLGYSNGYPRAQSNNGYILIKGKKAPITGLINMNLFMVDISHIKDVAVGDEVVLIGRQNNTTINVSSFTNVTQLLNNEMLSRLPAAIPRKAVR 378
            K+D+MD+R V AGEFIGYGTAY AT++M+VAVLPLGYSNGYPR QSN GY+LIKGKKAP+ GLINMNLFMVD+SHI DV VG+EVVL+G+Q N TIN+SSFT VTQL+NNEMLSRLPAAIPRK V+
Sbjct:  261 KTDVMDVRDVRAGEFIGYGTAYQATQDMRVAVLPLGYSNGYPRGQSNRGYVLIKGKKAPVVGLINMNLFMVDVSHIPDVEVGEEVVLVGKQKNNTINISSFTQVTQLMNNEMLSRLPAAIPRKIVK 386
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BLAST of mRNA_C-australica_Contig_10321.2.1 vs. uniprot
Match: A0A2E8N4C3_9RICK (Alanine racemase n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E8N4C3_9RICK)

HSP 1 Score: 202 bits (513), Expect = 3.990e-63
Identity = 97/126 (76.98%), Postives = 113/126 (89.68%), Query Frame = 1 
Query:    1 KSDIMDIRYVDAGEFIGYGTAYHATRNMKVAVLPLGYSNGYPRAQSNNGYILIKGKKAPITGLINMNLFMVDISHIKDVAVGDEVVLIGRQNNTTINVSSFTNVTQLLNNEMLSRLPAAIPRKAVR 378
            K+D+MD+R+V  GEFIGYGT+Y ATR+M+VAVLPLGYSNGYPR QSN G++LIKGKKAP+ GLINMNLFMVD+SHIK V VG+EVVL+GRQ + TIN+SSFT VTQLLNNEMLSRLPAAIPR  V+
Sbjct:  134 KTDVMDLRHVKEGEFIGYGTSYQATRDMEVAVLPLGYSNGYPRGQSNRGHVLIKGKKAPVVGLINMNLFMVDVSHIKGVEVGEEVVLVGRQKSNTINISSFTQVTQLLNNEMLSRLPAAIPRTVVK 259
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BLAST of mRNA_C-australica_Contig_10321.2.1 vs. uniprot
Match: A0A5E8ANT0_9BACT (Alanine racemase n=1 Tax=Imperialibacter sp. EC-SDR9 TaxID=2038371 RepID=A0A5E8ANT0_9BACT)

HSP 1 Score: 204 bits (519), Expect = 1.760e-62
Identity = 99/126 (78.57%), Postives = 112/126 (88.89%), Query Frame = 1 
Query:    1 KSDIMDIRYVDAGEFIGYGTAYHATRNMKVAVLPLGYSNGYPRAQSNNGYILIKGKKAPITGLINMNLFMVDISHIKDVAVGDEVVLIGRQNNTTINVSSFTNVTQLLNNEMLSRLPAAIPRKAVR 378
            K+D+MD+R VD GEFIGYGT+Y AT+ MK+AV+PLGYSNGYPRA SN G +LI GKKAPI GLINMNLFMVD+SHI  V VGDEVVL+GRQNN TIN+SSFTNVTQL+NNEMLSRLPAAIPRK V+
Sbjct:  260 KTDVMDVRDVDPGEFIGYGTSYQATQKMKIAVMPLGYSNGYPRALSNRGQVLIHGKKAPIVGLINMNLFMVDVSHIPGVEVGDEVVLVGRQNNNTINISSFTNVTQLINNEMLSRLPAAIPRKIVK 385
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BLAST of mRNA_C-australica_Contig_10321.2.1 vs. uniprot
Match: G0J5N8_CYCMS (Alanine racemase n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745 / LMG 13164 / NCIMB 1802) TaxID=880070 RepID=G0J5N8_CYCMS)

HSP 1 Score: 204 bits (519), Expect = 1.760e-62
Identity = 102/126 (80.95%), Postives = 111/126 (88.10%), Query Frame = 1 
Query:    1 KSDIMDIRYVDAGEFIGYGTAYHATRNMKVAVLPLGYSNGYPRAQSNNGYILIKGKKAPITGLINMNLFMVDISHIKDVAVGDEVVLIGRQNNTTINVSSFTNVTQLLNNEMLSRLPAAIPRKAVR 378
            K+DIMDIR VD GEFIGYGTA+ AT+NMK+AVLPLGYSNGYPRA SN G +LI GKKAPI GLINMNLFMVDI+HIK+V VGDEVVLIGRQ N  INVSSFTN TQLLNNEMLSRLPAAIPR  ++
Sbjct:  260 KTDIMDIRTVDQGEFIGYGTAFQATQNMKIAVLPLGYSNGYPRALSNRGQVLIHGKKAPIVGLINMNLFMVDITHIKNVEVGDEVVLIGRQKNNVINVSSFTNATQLLNNEMLSRLPAAIPRSVIK 385
[Close]
BLAST of mRNA_C-australica_Contig_10321.2.1 vs. uniprot
Match: A0A1M7L3A5_9BACT (Alanine racemase n=3 Tax=Cyclobacterium TaxID=68288 RepID=A0A1M7L3A5_9BACT)

HSP 1 Score: 204 bits (519), Expect = 1.760e-62
Identity = 104/126 (82.54%), Postives = 111/126 (88.10%), Query Frame = 1 
Query:    1 KSDIMDIRYVDAGEFIGYGTAYHATRNMKVAVLPLGYSNGYPRAQSNNGYILIKGKKAPITGLINMNLFMVDISHIKDVAVGDEVVLIGRQNNTTINVSSFTNVTQLLNNEMLSRLPAAIPRKAVR 378
            K+D+MDIR VD GEFIGYGTA+ AT  M VAVLPLGYSNGYPRA SN G +LIKGKKAPI GLINMNLFMVDI+HI +V VGDEVVLIGRQNN+ INVSSFTNVTQLLNNEMLSRLPAAIPR  VR
Sbjct:  260 KTDVMDIRKVDQGEFIGYGTAFQATHAMTVAVLPLGYSNGYPRALSNRGQVLIKGKKAPIVGLINMNLFMVDITHIPEVEVGDEVVLIGRQNNSVINVSSFTNVTQLLNNEMLSRLPAAIPRTVVR 385
[Close]
BLAST of mRNA_C-australica_Contig_10321.2.1 vs. uniprot
Match: A0A6N2CXS0_9BACT (Alanine racemase n=1 Tax=Saprospirales bacterium TaxID=2026790 RepID=A0A6N2CXS0_9BACT)

HSP 1 Score: 204 bits (518), Expect = 2.480e-62
Identity = 100/126 (79.37%), Postives = 114/126 (90.48%), Query Frame = 1 
Query:    1 KSDIMDIRYVDAGEFIGYGTAYHATRNMKVAVLPLGYSNGYPRAQSNNGYILIKGKKAPITGLINMNLFMVDISHIKDVAVGDEVVLIGRQNNTTINVSSFTNVTQLLNNEMLSRLPAAIPRKAVR 378
            K+DIMDIR V+ GEFIGYGTAY AT++M++AVLPLGYSNGYPRAQSN GY+LI+GKKA ITGLINMNLFMVDISHI DV VGDEV+L+GRQ N +IN++SFT VTQLLNNEMLSRLP+ IPRK VR
Sbjct:  260 KTDIMDIREVEEGEFIGYGTAYQATQSMRIAVLPLGYSNGYPRAQSNRGYVLIRGKKARITGLINMNLFMVDISHIPDVKVGDEVILVGRQKNKSINIASFTQVTQLLNNEMLSRLPSDIPRKPVR 385
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10321.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A353WUV0_9BACT1.080e-6684.92Alanine racemase n=1 Tax=Cytophagales bacterium Ta... [more]
A0A1N6G4E6_9BACT2.760e-6480.16Alanine racemase n=5 Tax=Algoriphagus TaxID=246875... [more]
A0A654E712_9BACT5.520e-6480.16Alanine racemase n=1 Tax=Marinoscillum sp. 108 Tax... [more]
A0A6I7MNI2_9BACT7.800e-6483.33Alanine racemase n=2 Tax=Cyclobacteriaceae TaxID=5... [more]
A0A3D9L585_MARFU3.200e-6378.57Alanine racemase n=1 Tax=Marinoscillum furvescens ... [more]
A0A2E8N4C3_9RICK3.990e-6376.98Alanine racemase n=1 Tax=Rickettsiales bacterium T... [more]
A0A5E8ANT0_9BACT1.760e-6278.57Alanine racemase n=1 Tax=Imperialibacter sp. EC-SD... [more]
G0J5N8_CYCMS1.760e-6280.95Alanine racemase n=1 Tax=Cyclobacterium marinum (s... [more]
A0A1M7L3A5_9BACT1.760e-6282.54Alanine racemase n=3 Tax=Cyclobacterium TaxID=6828... [more]
A0A6N2CXS0_9BACT2.480e-6279.37Alanine racemase n=1 Tax=Saprospirales bacterium T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10321contigC-australica_Contig_10321:447..827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1189612.A33Q_0289
PFAMsAla_racemase_C,Ala_racemase_N
Model size381
Max annot lvl976|Bacteroidetes
KEGG rclassRC00285
KEGG koko:K01775
KEGG ReactionR00401
KEGG Pathwayko00473,ko01100,ko01502,map00473,map01100,map01502
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.07e-64
EggNOG OGsCOG0787@1|root,COG0787@2|Bacteria,4NG3U@976|Bacteroidetes,47TJV@768503|Cytophagia
EC5.1.1.1
DescriptionCatalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
Cds size369
COG categoryM
BRITEko00000,ko00001,ko01000,ko01011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586770.3766525-CDS-C-australica_Contig_10321:446..8151682586770.3766525-CDS-C-australica_Contig_10321:446..815Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10321 447..815 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586770.3862293-UTR-C-australica_Contig_10321:815..8271682586770.3862293-UTR-C-australica_Contig_10321:815..827Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10321 816..827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10321.2.1prot_C-australica_Contig_10321.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10321 447..815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10321.2.1

>prot_C-australica_Contig_10321.2.1 ID=prot_C-australica_Contig_10321.2.1|Name=mRNA_C-australica_Contig_10321.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=123bp
MDIRYVDAGEFIGYGTAYHATRNMKVAVLPLGYSNGYPRAQSNNGYILIK
GKKAPITGLINMNLFMVDISHIKDVAVGDEVVLIGRQNNTTINVSSFTNV
TQLLNNEMLSRLPAAIPRKAVR*
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mRNA from alignment at C-australica_Contig_10321:447..827-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10321.2.1 ID=mRNA_C-australica_Contig_10321.2.1|Name=mRNA_C-australica_Contig_10321.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=381bp|location=Sequence derived from alignment at C-australica_Contig_10321:447..827- (Chrysoparadoxa australica CS_1217)
AAATCAGACATCATGGACATCAGGTACGTAGACGCAGGAGAGTTTATTGG
ATATGGTACAGCTTATCATGCTACAAGAAATATGAAAGTGGCTGTTCTTC
CATTGGGATATTCCAATGGGTATCCACGAGCCCAATCCAATAATGGTTAT
ATACTTATCAAAGGAAAGAAAGCGCCTATTACCGGGCTGATTAACATGAA
CCTTTTTATGGTTGATATCTCACATATCAAAGATGTAGCTGTGGGTGATG
AGGTGGTATTGATTGGCCGACAAAATAACACTACTATCAATGTAAGCTCA
TTTACCAATGTCACGCAATTATTAAACAATGAAATGCTTAGTCGTTTACC
CGCCGCTATTCCGAGGAAGGCGGTGCGGTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_10321:447..827-

>mRNA_C-australica_Contig_10321.2.1 ID=mRNA_C-australica_Contig_10321.2.1|Name=mRNA_C-australica_Contig_10321.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=369bp|location=Sequence derived from alignment at C-australica_Contig_10321:447..827- (Chrysoparadoxa australica CS_1217)
ATGGACATCAGGTACGTAGACGCAGGAGAGTTTATTGGATATGGTACAGC
TTATCATGCTACAAGAAATATGAAAGTGGCTGTTCTTCCATTGGGATATT
CCAATGGGTATCCACGAGCCCAATCCAATAATGGTTATATACTTATCAAA
GGAAAGAAAGCGCCTATTACCGGGCTGATTAACATGAACCTTTTTATGGT
TGATATCTCACATATCAAAGATGTAGCTGTGGGTGATGAGGTGGTATTGA
TTGGCCGACAAAATAACACTACTATCAATGTAAGCTCATTTACCAATGTC
ACGCAATTATTAAACAATGAAATGCTTAGTCGTTTACCCGCCGCTATTCC
GAGGAAGGCGGTGCGGTGA
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