mRNA_C-australica_Contig_10321.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10321.1.1
Unique NamemRNA_C-australica_Contig_10321.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10321.1.1 vs. uniprot
Match: UPI001391C8C4 (transposase n=2 Tax=Cyclobacterium TaxID=68288 RepID=UPI001391C8C4)

HSP 1 Score: 161 bits (407), Expect = 9.660e-48
Identity = 72/130 (55.38%), Postives = 104/130 (80.00%), Query Frame = 1
Query:    1 FLIWTTQESVVMKKVGTIMIPQVNDGFRSL*SSYAQSINKQENRSGSLFRQKTKGKIIDE-NRFYPTNCFHYIHQNPIRAGLTAKMEDWKYSSFQEYTDPSRNKICDKKLAYKLLEINEEVFYEESYKII 387
            FLI T ++S+V  +VG++M+P +N+GFR L SSYAQ+INKQE RSGSLFRQKTK K++++ +  YP  CFHYIHQNP+R+GL  K+EDW++SSF +Y       +CD++ A +LL+I++E+FY+ESY++I
Sbjct:   57 FLINTIKDSIVEMQVGSLMVPALNNGFRQLLSSYAQAINKQEGRSGSLFRQKTKAKLLEDGDEHYPLICFHYIHQNPLRSGLVGKLEDWEFSSFTDYLGMRNGSLCDQQTAIELLDISKELFYQESYRVI 186          
BLAST of mRNA_C-australica_Contig_10321.1.1 vs. uniprot
Match: L8JGS3_9BACT (Putative transposase n=1 Tax=Fulvivirga imtechensis AK7 TaxID=1237149 RepID=L8JGS3_9BACT)

HSP 1 Score: 150 bits (378), Expect = 2.470e-43
Identity = 70/130 (53.85%), Postives = 94/130 (72.31%), Query Frame = 1
Query:    1 FLIWTTQESVVMKKVGTIMIPQVNDGFRSL*SSYAQSINKQENRSGSLFRQKTKGKIIDENRF-YPTNCFHYIHQNPIRAGLTAKMEDWKYSSFQEYTDPSRNKICDKKLAYKLLEINEEVFYEESYKII 387
            FL++TT +S+ MKK G I +  + DGFR L SSY Q+INKQENR+GSLFRQKTK K +      YP  CFHYIHQNP+ AGL  +ME+W +SSFQ+Y       +CDK+LA+ L+ ++ + FYE+SY++I
Sbjct:   57 FLVYTTDKSIKMKKTGGIEMTALADGFRQLLSSYTQAINKQENRTGSLFRQKTKAKCLTNGGTNYPFVCFHYIHQNPMTAGLVDRMEEWPFSSFQDYCATRNGTLCDKELAFDLINLSRQSFYEQSYQVI 186          
BLAST of mRNA_C-australica_Contig_10321.1.1 vs. uniprot
Match: A0A239EZ61_9BACT (REP element-mobilizing transposase RayT n=1 Tax=Ekhidna lutea TaxID=447679 RepID=A0A239EZ61_9BACT)

HSP 1 Score: 138 bits (347), Expect = 7.210e-39
Identity = 64/120 (53.33%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    1 FLIWTTQESVVMKKVGTIMIPQVNDGFRSL*SSYAQSINKQENRSGSLFRQKTKGKIIDENRFYPTNCFHYIHQNPIRAGLTAKMEDWKYSSFQEYTDPSRNKICDKKLAYKLLEINEEV 360
            FLI TT+ S    KVG + +  +N+GFR L SSY Q+ NKQ NR+GSLFRQ+TK K++DE++ YP  CF+YIHQNP+ AGL +KMEDW++SSF++YT   +  +CDK LA +LL+++ ++
Sbjct:   57 FLISTTEASTREIKVGALNVTALNNGFRMLLSSYVQAFNKQINRTGSLFRQRTKSKLLDESKNYPFICFNYIHQNPMVAGLVSKMEDWEFSSFRDYTGIRKGTLCDKTLAAQLLDLDLQI 176          
BLAST of mRNA_C-australica_Contig_10321.1.1 vs. uniprot
Match: I4APK1_BERLS (Y1_Tnp domain-containing protein n=1 Tax=Bernardetia litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Fx l1 / Sio-4) TaxID=880071 RepID=I4APK1_BERLS)

HSP 1 Score: 131 bits (330), Expect = 4.490e-36
Identity = 65/132 (49.24%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    1 FLIWTTQESVVMKKVGTIMIPQVNDGFRSL*SSYAQSINKQENRSGSLFRQKTKGKIIDENRF--YPTNCFHYIHQNPIRAGLTAKMEDWKYSSFQEYTDPSRNKICDKKLAYKLLEINEEVFYEESYKIID 390
            FL+ T   S     +G + + ++++GFR L S YA   N +  RSGSLFRQKTKGK ++++    YP  CFHYIHQNP++A L  KMEDW++SSF++Y       +  K+ AY L++INEE FYEESY+IID
Sbjct:   57 FLVNTNDYSTEEIMLGKLTLTRLSNGFRLLTSQYATYFNHKYKRSGSLFRQKTKGKNLEDSEQGNYPFTCFHYIHQNPMKAKLCQKMEDWEFSSFKDYLGVRTGSLITKQTAYDLIDINEEYFYEESYQIID 188          
BLAST of mRNA_C-australica_Contig_10321.1.1 vs. uniprot
Match: UPI0019BC2BC8 (Transposase n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI0019BC2BC8)

HSP 1 Score: 129 bits (323), Expect = 4.980e-35
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 1
Query:    1 FLIWTTQESVVMKKVGTIMIPQVNDGFRSL*SSYAQSINKQENRSGSLFRQKTKGKIIDE-NRFYPTNCFHYIHQNPIRAGLTAKMEDWKYSSFQEYTDPSRNKICDKKLAYKLLEINEEVFYEESYKIID 390
            FLI   Q ++  K+VG I    +++G R+L  +YA++INKQ   +GSLF+Q TK K I E ++ Y   CFHY HQNP++A L  KMEDW YSSF++YT      +C++ LA++LL+IN +  Y++SY+IID
Sbjct:   57 FLIHVDQRTIQTKRVGLIEKNILSEGIRNLLQTYAKAINKQNQSTGSLFQQNTKAKCISEGSKLYGEICFHYNHQNPMKARLVKKMEDWDYSSFKDYTRLRNGTLCNQALAFQLLDINPKTLYQDSYRIID 187          
BLAST of mRNA_C-australica_Contig_10321.1.1 vs. uniprot
Match: A0A2M7NLY9_9BACT (Transposase n=1 Tax=Flexibacter sp. CG_4_10_14_3_um_filter_32_15 TaxID=1975530 RepID=A0A2M7NLY9_9BACT)

HSP 1 Score: 128 bits (322), Expect = 7.660e-35
Identity = 66/132 (50.00%), Postives = 92/132 (69.70%), Query Frame = 1
Query:    1 FLIWTTQESVVMKKVGTIMIPQVNDGFRSL*SSYAQSINKQENRSGSLFRQKTKGKIIDE-NRFYPTNCFHYIHQNPIRAGLTAKMEDWKYSSFQEYTDPSRNKICDKKLAYKLLEINE--EVFYEESYKII 387
            F I  T+ES  + K+G I I ++ +GFR L S YA   N++  RSGSLFRQKTK K ++  N+ YP  CF+Y+HQNPI+AGL  KMEDW++SSF++Y      KI +K+ A+ L++I+E  E+FYE+SY  I
Sbjct:   57 FTINATEESSELMKLGGININKLTNGFRLLNSLYANQFNEKYKRSGSLFRQKTKAKSLEHSNKDYPFICFNYVHQNPIKAGLCEKMEDWEFSSFRDYWGVRNGKIINKEFAFDLIDISEDKELFYEDSYSNI 188          
BLAST of mRNA_C-australica_Contig_10321.1.1 vs. uniprot
Match: A0A7U4E658_RUNSL (Y1_Tnp domain-containing protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) TaxID=761193 RepID=A0A7U4E658_RUNSL)

HSP 1 Score: 128 bits (321), Expect = 1.030e-34
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = 1
Query:    1 FLIWTTQESVVMKKVGTIMIPQVNDGFRSL*SSYAQSINKQENRSGSLFRQKTKGKIID-ENRFYPTNCFHYIHQNPIRAGLTAKMEDWKYSSFQEYTDPSRNKICDKKLAYKLLEINEEVFYEESYKII 387
            FLI  T+ S V  K+G   +  + DGFR L SSY Q+INKQE+R+GSLFRQK K K ++  +  YP  CFHYIHQNP++A L   +EDW YSSF +Y    +  +CD+ LA +LL+ N+E F  +S+ +I
Sbjct:   57 FLINATKNSAVKIKIGHNEMSLLADGFRKLLSSYCQAINKQEDRTGSLFRQKPKAKNVEISDIHYPFQCFHYIHQNPLKASLIKSLEDWPYSSFCDYAALRQGTLCDQTLAMQLLDFNKESFISDSHAMI 186          
BLAST of mRNA_C-australica_Contig_10321.1.1 vs. uniprot
Match: UPI00191D40FC (transposase n=1 Tax=Marivirga atlantica TaxID=1548457 RepID=UPI00191D40FC)

HSP 1 Score: 125 bits (314), Expect = 1.080e-33
Identity = 62/129 (48.06%), Postives = 94/129 (72.87%), Query Frame = 1
Query:    1 FLIWTTQESVVMKKVGTIMIPQVNDGFRSL*SSYAQSINKQENRSGSLFRQKTKGKIIDENRFYPTNCFHYIHQNPIRAGLTAKMEDWKYSSFQEYTDPSRNKICDKKLAYKLLEINEEVFYEESYKII 387
            FL+ TT ESV  KK+G++   ++ +G R L +SYA+  N++ +RSGSLFRQ TK K+I E+  Y   CF+YIHQNP+ A L  KMEDW++SSF++Y +  +  + +K++A +L+ I++E+ Y+ESYKII
Sbjct:   57 FLLNTTMESVATKKIGSLESTELQNGVRLLLTSYAKIYNEKYDRSGSLFRQNTKYKMI-ESEEYAFICFNYIHQNPMSAQLCQKMEDWEFSSFRDYINQRKGTLVNKQMARELIGIDDEIVYKESYKII 184          
BLAST of mRNA_C-australica_Contig_10321.1.1 vs. uniprot
Match: A0A1X7IJ02_9BACT (Putative transposase n=1 Tax=Marivirga sericea TaxID=1028 RepID=A0A1X7IJ02_9BACT)

HSP 1 Score: 124 bits (311), Expect = 3.220e-33
Identity = 60/133 (45.11%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    1 FLIWTTQESVVMKKVGTIMIPQVNDGFRSL*SSYAQSINKQENRSGSLFRQKTKGKIIDENRF-YPTNCFHYIHQNPIRAGLTAKMEDWKYSSFQEYTDPSRNKICDKKLAYKLLEINEEVFYEESYKIIDFK 396
            FLI+T Q+S+   ++G +    + + FR + SS++   N +  R+GSLFRQKTK K+++  +  YP  CF+YIHQNP++AGL  KMEDWKYSSFQ+Y       +C+ +LA KL++I+++ FY  SY +I+ K
Sbjct:   57 FLIYTNQKSIESIQLGLLESQVLKNSFRLINSSFSIEFNNKYTRTGSLFRQKTKFKLLENKKDNYPFICFNYIHQNPLKAGLVKKMEDWKYSSFQDYLGIREGTLCNFELAEKLIDIHKDDFYNTSYSVINEK 189          
BLAST of mRNA_C-australica_Contig_10321.1.1 vs. uniprot
Match: A0A150Y3U5_9BACT (Transposase n=2 Tax=Roseivirga seohaensis TaxID=1914963 RepID=A0A150Y3U5_9BACT)

HSP 1 Score: 123 bits (308), Expect = 9.130e-33
Identity = 58/129 (44.96%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    1 FLIWTTQESVVMKKVGTIMIPQVNDGFRSL*SSYAQSINKQENRSGSLFRQKTKGKI-IDENRFYPTNCFHYIHQNPIRAGLTAKMEDWKYSSFQEYTDPSRNKICDKKLAYKLLEINEEVFYEESYKI 384
            FL+  T++S  + K G I + ++++ FR L S YA   NK+ +RSGSLFRQKTK K+ +D N+ +   CF Y HQNP +AGL  KMEDW++SSF++Y+      +C+K++A+ L+ +NE+ F E+SY +
Sbjct:   57 FLLNVTEKSTELVKQGNIEVTRLSNSFRLLLSQYALGFNKKHDRSGSLFRQKTKSKLMVDSNQAFI--CFQYTHQNPWKAGLVGKMEDWEFSSFRDYSLMRNGSLCNKEIAFNLINVNEKTFVEDSYGV 183          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10321.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001391C8C49.660e-4855.38transposase n=2 Tax=Cyclobacterium TaxID=68288 Rep... [more]
L8JGS3_9BACT2.470e-4353.85Putative transposase n=1 Tax=Fulvivirga imtechensi... [more]
A0A239EZ61_9BACT7.210e-3953.33REP element-mobilizing transposase RayT n=1 Tax=Ek... [more]
I4APK1_BERLS4.490e-3649.24Y1_Tnp domain-containing protein n=1 Tax=Bernardet... [more]
UPI0019BC2BC84.980e-3547.33Transposase n=1 Tax=Chitinophagaceae bacterium Tax... [more]
A0A2M7NLY9_9BACT7.660e-3550.00Transposase n=1 Tax=Flexibacter sp. CG_4_10_14_3_u... [more]
A0A7U4E658_RUNSL1.030e-3449.23Y1_Tnp domain-containing protein n=1 Tax=Runella s... [more]
UPI00191D40FC1.080e-3348.06transposase n=1 Tax=Marivirga atlantica TaxID=1548... [more]
A0A1X7IJ02_9BACT3.220e-3345.11Putative transposase n=1 Tax=Marivirga sericea Tax... [more]
A0A150Y3U5_9BACT9.130e-3344.96Transposase n=2 Tax=Roseivirga seohaensis TaxID=19... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10321contigC-australica_Contig_10321:6..413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog880071.Fleli_3567
PFAMsY1_Tnp
Model size408
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.76e-09
EggNOG OGsCOG1943@1|root,COG1943@2|Bacteria,4NPUC@976|Bacteroidetes,47Q09@768503|Cytophagia
DescriptionTransposase IS200 like
Cds size156
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586770.3391643-UTR-C-australica_Contig_10321:5..2571682586770.3391643-UTR-C-australica_Contig_10321:5..257Chrysoparadoxa australica CS_1217UTRC-australica_Contig_10321 6..257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586770.3488781-CDS-C-australica_Contig_10321:257..4131682586770.3488781-CDS-C-australica_Contig_10321:257..413Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10321 258..413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10321.1.1prot_C-australica_Contig_10321.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10321 258..413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10321.1.1

>prot_C-australica_Contig_10321.1.1 ID=prot_C-australica_Contig_10321.1.1|Name=mRNA_C-australica_Contig_10321.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=52bp
MEDWKYSSFQEYTDPSRNKICDKKLAYKLLEINEEVFYEESYKIIDFKGF
K*
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mRNA from alignment at C-australica_Contig_10321:6..413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10321.1.1 ID=mRNA_C-australica_Contig_10321.1.1|Name=mRNA_C-australica_Contig_10321.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=408bp|location=Sequence derived from alignment at C-australica_Contig_10321:6..413+ (Chrysoparadoxa australica CS_1217)
TTCCTTATTTGGACAACACAAGAATCAGTAGTAATGAAAAAAGTGGGGAC AATAATGATCCCTCAAGTAAATGATGGATTTAGGAGTCTGTAAAGCTCCT ATGCTCAATCCATAAATAAGCAAGAGAATCGATCCGGATCATTATTCAGA CAAAAAACAAAAGGAAAAATCATTGATGAGAATAGATTCTATCCAACTAA CTGCTTCCATTATATCCACCAGAATCCCATCCGTGCGGGATTAACGGCTA AAATGGAGGATTGGAAATATTCATCTTTTCAGGAATATACAGATCCCTCC AGAAATAAAATCTGCGATAAGAAACTTGCCTATAAGCTATTAGAGATCAA TGAGGAGGTATTTTATGAAGAATCTTATAAGATTATTGATTTTAAGGGGT TTAAGTAG
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Coding sequence (CDS) from alignment at C-australica_Contig_10321:6..413+

>mRNA_C-australica_Contig_10321.1.1 ID=mRNA_C-australica_Contig_10321.1.1|Name=mRNA_C-australica_Contig_10321.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=156bp|location=Sequence derived from alignment at C-australica_Contig_10321:6..413+ (Chrysoparadoxa australica CS_1217)
ATGGAGGATTGGAAATATTCATCTTTTCAGGAATATACAGATCCCTCCAG
AAATAAAATCTGCGATAAGAAACTTGCCTATAAGCTATTAGAGATCAATG
AGGAGGTATTTTATGAAGAATCTTATAAGATTATTGATTTTAAGGGGTTT
AAGTAG
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