mRNA_C-australica_Contig_1032.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1032.2.1
Unique NamemRNA_C-australica_Contig_1032.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1032.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1032contigC-australica_Contig_1032:1625..2279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size416
Hectar predicted targeting categorysignal peptide
Exons4
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586769.672992-CDS-C-australica_Contig_1032:1624..16511682586769.672992-CDS-C-australica_Contig_1032:1624..1651Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 1625..1651 -
1682586769.6856048-CDS-C-australica_Contig_1032:1759..18361682586769.6856048-CDS-C-australica_Contig_1032:1759..1836Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 1760..1836 -
1682586769.6973472-CDS-C-australica_Contig_1032:1908..20311682586769.6973472-CDS-C-australica_Contig_1032:1908..2031Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 1909..2031 -
1682586769.7184834-CDS-C-australica_Contig_1032:2090..22591682586769.7184834-CDS-C-australica_Contig_1032:2090..2259Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1032 2091..2259 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586769.7309682-UTR-C-australica_Contig_1032:2259..22791682586769.7309682-UTR-C-australica_Contig_1032:2259..2279Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1032 2260..2279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1032.2.1prot_C-australica_Contig_1032.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1032 1625..2259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1032.2.1

>prot_C-australica_Contig_1032.2.1 ID=prot_C-australica_Contig_1032.2.1|Name=mRNA_C-australica_Contig_1032.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=132bp
MRLVHVTLLAALGGVAAEEAASLTTGGLMDASRVLHEMGSDQAKSFVDEV
LQGCDDDESQGAALCSRAAYFKGVMLRQEASEQAARAKGVDPAGCEPEAP
SAMAVESVLAFRDFFLNYELERKAVHLTDLED
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mRNA from alignment at C-australica_Contig_1032:1625..2279-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1032.2.1 ID=mRNA_C-australica_Contig_1032.2.1|Name=mRNA_C-australica_Contig_1032.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=655bp|location=Sequence derived from alignment at C-australica_Contig_1032:1625..2279- (Chrysoparadoxa australica CS_1217)
GCCTGGGAGGGGTGGGGGGAATGAGGCTAGTGCATGTCACACTGTTGGCG
GCACTCGGCGGGGTTGCCGCCGAGGAGGCTGCTTCGCTCACTACTGGCGG
GCTGATGGACGCTTCAAGGGTGCTACACGAGATGGGGAGTGACCAGGCCA
AGAGCTTCGTGGACGAGGTCTTGCAGGGCTGTGATGATGGTAAGATTAAG
CCCAGGTGCATTGCCGAGGATACGGAGCTCTGACCCAATATGCTGCAGAT
GAGAGCCAGGGCGCAGCGCTTTGCAGCCGAGCAGCTTACTTCAAGGGGGT
CATGCTCAGACAGGAAGCATCAGAGCAGGCCGCAAGGGCAAAGGGCGTCG
ATCCTGCTGGTTGCGAGCCAGGTGACCTAACTTGTCCCATCTGCCATCCA
TACCAAGCCCTTCCTTACCCATTCTGATTGATCCCTACCACAGAGGCCCC
TTCAGCCATGGCAGTTGAGAGTGTCTTAGCATTTCGCGACTTCTTCCTCA
ACTATGAGTTGGAAAGGAAGGTAAGAGATTGAAAACGCAAGTTAGCTGCT
GGTTTCCTCTCTGTCACTGAATACCCAACCATCCCTGACCTGCTTGTCAC
ATTTTCTCCTGACTGCCAATGCTTGCAGGCAGTTCACCTAACCGACCTGG
AGGAC
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Coding sequence (CDS) from alignment at C-australica_Contig_1032:1625..2279-

>mRNA_C-australica_Contig_1032.2.1 ID=mRNA_C-australica_Contig_1032.2.1|Name=mRNA_C-australica_Contig_1032.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=396bp|location=Sequence derived from alignment at C-australica_Contig_1032:1625..2279- (Chrysoparadoxa australica CS_1217)
ATGAGGCTAGTGCATGTCACACTGTTGGCGGCACTCGGCGGGGTTGCCGC
CGAGGAGGCTGCTTCGCTCACTACTGGCGGGCTGATGGACGCTTCAAGGG
TGCTACACGAGATGGGGAGTGACCAGGCCAAGAGCTTCGTGGACGAGGTC
TTGCAGGGCTGTGATGATGATGAGAGCCAGGGCGCAGCGCTTTGCAGCCG
AGCAGCTTACTTCAAGGGGGTCATGCTCAGACAGGAAGCATCAGAGCAGG
CCGCAAGGGCAAAGGGCGTCGATCCTGCTGGTTGCGAGCCAGAGGCCCCT
TCAGCCATGGCAGTTGAGAGTGTCTTAGCATTTCGCGACTTCTTCCTCAA
CTATGAGTTGGAAAGGAAGGCAGTTCACCTAACCGACCTGGAGGAC
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