mRNA_C-australica_Contig_103.10.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_103.10.1
Unique NamemRNA_C-australica_Contig_103.10.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_103.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_103contigC-australica_Contig_103:42728..43714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G398
PFAMsGPS,REJ
Model size349
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue3.96e-05
EggNOG OGsKOG3599@1|root,KOG3599@2759|Eukaryota
Descriptiondetection of mechanical stimulus
Cds size348
COG categoryE
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_103.10.1prot_C-australica_Contig_103.10.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_103 42728..43713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586766.8586864-CDS-C-australica_Contig_103:42727..427501682586766.8586864-CDS-C-australica_Contig_103:42727..42750Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 42728..42750 +
1682586766.8722477-CDS-C-australica_Contig_103:42834..428951682586766.8722477-CDS-C-australica_Contig_103:42834..42895Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 42835..42895 +
1682586766.885205-CDS-C-australica_Contig_103:43085..431751682586766.885205-CDS-C-australica_Contig_103:43085..43175Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 43086..43175 +
1682586766.894735-CDS-C-australica_Contig_103:43257..433511682586766.894735-CDS-C-australica_Contig_103:43257..43351Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 43258..43351 +
1682586766.9073696-CDS-C-australica_Contig_103:43539..435841682586766.9073696-CDS-C-australica_Contig_103:43539..43584Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 43540..43584 +
1682586766.9224784-CDS-C-australica_Contig_103:43678..437131682586766.9224784-CDS-C-australica_Contig_103:43678..43713Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 43679..43713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_103.10.1

>prot_C-australica_Contig_103.10.1 ID=prot_C-australica_Contig_103.10.1|Name=mRNA_C-australica_Contig_103.10.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=116bp
AGGNYIEVVRSRRQVIKAVVTMPTCDGEEPTLASFQTTWAEVTGDEYASL
LSEPLNDLAQGDTIVLPKYSLGPAGSRHKLSVTVSTAAIGGASTTAYVEI
LVKPGALTAVIFGGKT
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mRNA from alignment at C-australica_Contig_103:42728..43714+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_103.10.1 ID=mRNA_C-australica_Contig_103.10.1|Name=mRNA_C-australica_Contig_103.10.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=987bp|location=Sequence derived from alignment at C-australica_Contig_103:42728..43714+ (Chrysoparadoxa australica CS_1217)
GCAGGAGGTAATTACATTGAAGTGTAAGTACACCACCTCTTGCTTATGTT
AGCTCTTTTTGACTAGTCAAGCATGTAGCTCAGACGTACACTTAACTGCC
ATCTCAGAGTGAGGAGCAGGCGGCAAGTAATCAAAGCAGTGGTGACTATG
CCAACATGCGATGGCGAGGTACTTAACACCAGCAAAAAGTGTTTGAGAAG
AAACAGAGCAGCTGCACTCAACAATGTCAAGCTAGTATAAAACCTCACAT
CCAGTCACAGCCTTGACCTGCAGAGAGTTCGTCGCTTCAGCCATCCCTAG
GCCACCTTCTTTTCCAATTGAGGATTAATAGAAGCCACCTTCTTTCTCCA
TCAATCAGGAACCTACCCTAGCCAGCTTTCAGACAACATGGGCGGAGGTC
ACTGGTGATGAATACGCTTCACTGCTCAGTGAACCATTGAATGACTTGGT
ATGATTAATATGTCTGCCATTCTGTCCCTAGCTGATATCATAAGAGGGAT
TAAAGTTTCCCTTGTCTTGATCTGAAATAGGCACAAGGCGATACTATTGT
CCTACCGAAGTACAGCCTGGGTCCAGCAGGTAGCCGTCACAAGCTCTCAG
TTACAGTGTCAACAGCAGCTATAGGTTTGTTAATTATAACCTGAGCTCCC
TGCCGTGGCGTCACATGAAGTACCTTTACCTCATAAGATGGTTCAGAGCT
GGAAATCGCTGCACACGATTGTGTGCAAGAGGATCGAATGCACTGGTGGC
TGCTTTTGCCAAGCCCCTAGCATAGTTTGATCTGACATCAATGAACTCTA
ACCGTGTTGAAGGTGGAGCATCTACCACTGCATATGTGGAGATTCTAGTC
AAGCCGGGTAGGTTATGTATGCAATTTCCCCGTAGTGGATTTGACTTGAT
GAAAATTCAGCCTGCCTGCATGAAATTTACAAGATGTGTGTCATGTCCCA
GGGGCTTTGACGGCAGTCATTTTTGGAGGGAAAACAC
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Coding sequence (CDS) from alignment at C-australica_Contig_103:42728..43714+

>mRNA_C-australica_Contig_103.10.1 ID=mRNA_C-australica_Contig_103.10.1|Name=mRNA_C-australica_Contig_103.10.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=348bp|location=Sequence derived from alignment at C-australica_Contig_103:42728..43714+ (Chrysoparadoxa australica CS_1217)
GCAGGAGGTAATTACATTGAAGTAGTGAGGAGCAGGCGGCAAGTAATCAA
AGCAGTGGTGACTATGCCAACATGCGATGGCGAGGAACCTACCCTAGCCA
GCTTTCAGACAACATGGGCGGAGGTCACTGGTGATGAATACGCTTCACTG
CTCAGTGAACCATTGAATGACTTGGCACAAGGCGATACTATTGTCCTACC
GAAGTACAGCCTGGGTCCAGCAGGTAGCCGTCACAAGCTCTCAGTTACAG
TGTCAACAGCAGCTATAGGTGGAGCATCTACCACTGCATATGTGGAGATT
CTAGTCAAGCCGGGGGCTTTGACGGCAGTCATTTTTGGAGGGAAAACA
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