mRNA_C-australica_Contig_103.5.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_103.5.1
Unique NamemRNA_C-australica_Contig_103.5.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_103.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_103contigC-australica_Contig_103:16150..17329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size568
Hectar predicted targeting categoryother localisation
Exons5
Cds size564
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586765.4607506-CDS-C-australica_Contig_103:16151..162011682586765.4607506-CDS-C-australica_Contig_103:16151..16201Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 16152..16201 -
1682586765.4722645-CDS-C-australica_Contig_103:16323..164201682586765.4722645-CDS-C-australica_Contig_103:16323..16420Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 16324..16420 -
1682586765.4849522-CDS-C-australica_Contig_103:16605..166671682586765.4849522-CDS-C-australica_Contig_103:16605..16667Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 16606..16667 -
1682586765.4943585-CDS-C-australica_Contig_103:16892..169861682586765.4943585-CDS-C-australica_Contig_103:16892..16986Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 16893..16986 -
1682586765.5038364-CDS-C-australica_Contig_103:17068..173291682586765.5038364-CDS-C-australica_Contig_103:17068..17329Chrysoparadoxa australica CS_1217CDSC-australica_Contig_103 17069..17329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_103.5.1prot_C-australica_Contig_103.5.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_103 16152..17329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_103.5.1

>prot_C-australica_Contig_103.5.1 ID=prot_C-australica_Contig_103.5.1|Name=mRNA_C-australica_Contig_103.5.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=188bp
QSEAREGAASTTGEATRKTSLANGTSQTSQTSKTCRTSGTSKSAERLKAL
GLVGEADELHVMECCKELEQDEGELDGDEVDESCLHEISLELVSHGVGGP
KTVLHVTIDYIQNEHVYYVEPVPNGMHGSPLFLDGVLFAVHWETQAGIPS
DMGLLARHLFREELVANGDCSAPMGGFDTPVGAEALIK
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mRNA from alignment at C-australica_Contig_103:16150..17329-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_103.5.1 ID=mRNA_C-australica_Contig_103.5.1|Name=mRNA_C-australica_Contig_103.5.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1180bp|location=Sequence derived from alignment at C-australica_Contig_103:16150..17329- (Chrysoparadoxa australica CS_1217)
CAGAGCGAAGCAAGAGAAGGAGCGGCTAGCACTACAGGAGAAGCTACTCG
CAAGACAAGCCTTGCCAACGGAACAAGTCAAACAAGTCAAACCAGTAAAA
CATGCCGAACCAGTGGAACTAGCAAAAGCGCAGAGAGGCTCAAGGCCCTT
GGATTAGTGGGTGAGGCAGATGAGCTGCATGTGATGGAATGCTGCAAGGA
GCTTGAGCAGGATGAGGGGGAGCTCGATGGTGATGAGGTGGATGAGAGCT
GCCTCCATGAGGTGAGTACGCGTCTAGAGCATTCAAGGAGGAGTTATTCA
GGGGTGATAAAAGAGTACCAACATGCAGCTTGTATTCGCGTAGATCTCAT
TGGAGCTGGTGAGCCATGGTGTGGGCGGGCCAAAGACTGTGCTGCATGTC
ACTATTGACTACATTCAGAACGAGCACGTCTATTACGGTGAGTTGAGTTG
GGGAGCACCACATATTTCCCTAGCCACTTTGACAGCTCCATGCCGCAGCT
TCGTCCATCCACCAAATGACATGTAACAAACAGTTCACTGTTGGTTATGC
TGTGTTTGTGACGGCACCTGCTGACTGATGTCTGACCGATATCATGAACA
CTGATGCGCCCTCAAGCTTCTCTACTACTTGAACCATGCTGATGTGCTGC
CAATGCTTCCAGTGGAGCCGGTCCCCAATGGAATGCACGGCTCCCCACTG
TTTCTGGATGGAGTGCTGTTTGCGGTAAGTCTCTGAGTTCCCATGACACC
GGCATGGCTAGCTGGGGCAAGCCCCTATGCTAGGCAGCTCTAGAGGAGCT
CTGCCGGTGAAAATGAGTGAGGGGACAACAAGAGTGAGCAAAGTGAGAAA
GGCTGTGACCTCAGCAACTTTAAAGTTTTGTTAAAGACCACTGAGCTTTT
CCTGCACAGGTCCATTGGGAGACTCAAGCTGGCATCCCCAGTGATATGGG
TCTGCTGGCTCGTCACCTGTTCAGGGAAGAGCTTGTTGCTAATGGGGACT
GCTCAGGTGAGTTATCGTAATTTATGGCATTTTGCCAGCAGACCAAGCTG
GATAGTGTGGTACGGGCGAAGCCTTCAACCTCTGAACTACTCAGCTGACA
CAGAAACCTCTCCCTTTGTGTGCCACAGCCCCGATGGGAGGTTTTGACAC
ACCAGTCGGCGCTGAGGCTCTGATCAAGAG
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Coding sequence (CDS) from alignment at C-australica_Contig_103:16150..17329-

>mRNA_C-australica_Contig_103.5.1 ID=mRNA_C-australica_Contig_103.5.1|Name=mRNA_C-australica_Contig_103.5.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=564bp|location=Sequence derived from alignment at C-australica_Contig_103:16150..17329- (Chrysoparadoxa australica CS_1217)
CAGAGCGAAGCAAGAGAAGGAGCGGCTAGCACTACAGGAGAAGCTACTCG
CAAGACAAGCCTTGCCAACGGAACAAGTCAAACAAGTCAAACCAGTAAAA
CATGCCGAACCAGTGGAACTAGCAAAAGCGCAGAGAGGCTCAAGGCCCTT
GGATTAGTGGGTGAGGCAGATGAGCTGCATGTGATGGAATGCTGCAAGGA
GCTTGAGCAGGATGAGGGGGAGCTCGATGGTGATGAGGTGGATGAGAGCT
GCCTCCATGAGATCTCATTGGAGCTGGTGAGCCATGGTGTGGGCGGGCCA
AAGACTGTGCTGCATGTCACTATTGACTACATTCAGAACGAGCACGTCTA
TTACGTGGAGCCGGTCCCCAATGGAATGCACGGCTCCCCACTGTTTCTGG
ATGGAGTGCTGTTTGCGGTCCATTGGGAGACTCAAGCTGGCATCCCCAGT
GATATGGGTCTGCTGGCTCGTCACCTGTTCAGGGAAGAGCTTGTTGCTAA
TGGGGACTGCTCAGCCCCGATGGGAGGTTTTGACACACCAGTCGGCGCTG
AGGCTCTGATCAAG
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