mRNA_C-australica_Contig_10298.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10298.1.1
Unique NamemRNA_C-australica_Contig_10298.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10298.1.1 vs. uniprot
Match: A0A222DYY2_9RHOB (Uncharacterized protein n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222DYY2_9RHOB)

HSP 1 Score: 469 bits (1206), Expect = 5.220e-165
Identity = 248/254 (97.64%), Postives = 251/254 (98.82%), Query Frame = 1
Query:    1 MRSIFSFAAALALAGFSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGRRYVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGMTEAWSVSDVDDMAYDAQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMILSTNVESMMLGPDGTGAL 762
            MRSIFSFAAALALAG SAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGR+YVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGM EAWSVSDVDDMAYDAQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMIL TNV+SM+LGPDGTGAL
Sbjct:    1 MRSIFSFAAALALAGLSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGRQYVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGMAEAWSVSDVDDMAYDAQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMILRTNVDSMLLGPDGTGAL 254          
BLAST of mRNA_C-australica_Contig_10298.1.1 vs. uniprot
Match: A0A0B3SR94_9RHOB (Uncharacterized protein n=6 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0B3SR94_9RHOB)

HSP 1 Score: 358 bits (920), Expect = 1.640e-121
Identity = 187/254 (73.62%), Postives = 217/254 (85.43%), Query Frame = 1
Query:    1 MRSIFSFAAALALAGFSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGRRYVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGMTEAWSVSDVDDMAYDAQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMILSTNVESMMLGPDGTGAL 762
            MRS+ S AAA A++G +A  A +QSIETISVSPDG+TVLVGG+NRTVY +SA+++EVT RRYV  LVRQIVHG  GELVFFRDDAD +TAYK   M+ AW  SDVDDMAYD +   IA LDQH+KDDSV LL A+TGEQ+ARVAMGKIK+NLIAL PGA KALILT YTKTDAE+K DEP+DL+KLQKADFKQ+ DGYVSNVVTVDF +G+FEM+ETPYRVSYPKAVR++  KMM+L TN++SMML PDGTGAL
Sbjct:    1 MRSLISLAAAAAVSGIAATCAPAQSIETISVSPDGQTVLVGGTNRTVYALSAETLEVTDRRYVSELVRQIVHGVDGELVFFRDDADTLTAYKTADMSFAWKASDVDDMAYDPRAGAIAVLDQHYKDDSVSLLFAATGEQMARVAMGKIKSNLIALAPGADKALILTNYTKTDAEEKADEPDDLSKLQKADFKQLHDGYVSNVVTVDFGTGAFEMSETPYRVSYPKAVRMAGDKMMVLRTNMDSMMLAPDGTGAL 254          
BLAST of mRNA_C-australica_Contig_10298.1.1 vs. uniprot
Match: UPI001C95E85B (hypothetical protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=UPI001C95E85B)

HSP 1 Score: 350 bits (899), Expect = 2.540e-118
Identity = 181/254 (71.26%), Postives = 214/254 (84.25%), Query Frame = 1
Query:    1 MRSIFSFAAALALAGFSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGRRYVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGMTEAWSVSDVDDMAYDAQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMILSTNVESMMLGPDGTGAL 762
            MR++ S  A LA+AG +A +A +QSIETISVSPDGKT+LVGG+NRTVYT++A ++EVTGRRYVP LVRQIVHGA GE+VFFRDDAD +TAYK   M+ AW  SDVDDM YDA+   IAALDQH+KDDSV L  A+TGEQ+ARVAMGKIKANLIAL PGA KA++LT Y K+DAE+KQDEP DLTKLQKADFKQ+ DGYVSNVV+VDF +GSFEMAETPYRVS+PK VR+   ++M+L TN +SMM   DG+GAL
Sbjct:    1 MRTLISLIAGLAVAGVAASSAGAQSIETISVSPDGKTLLVGGTNRTVYTVTAGTLEVTGRRYVPQLVRQIVHGADGEMVFFRDDADTLTAYKTADMSVAWKASDVDDMVYDARAGAIAALDQHYKDDSVTLFFAATGEQMARVAMGKIKANLIALAPGADKAMVLTNYDKSDAEEKQDEPADLTKLQKADFKQLHDGYVSNVVSVDFGTGSFEMAETPYRVSFPKDVRMMGDQLMVLRTNFDSMMFSADGSGAL 254          
BLAST of mRNA_C-australica_Contig_10298.1.1 vs. uniprot
Match: A0A238J6E6_9RHOB (Uncharacterized protein n=1 Tax=Pelagimonas phthalicica TaxID=1037362 RepID=A0A238J6E6_9RHOB)

HSP 1 Score: 254 bits (648), Expect = 2.440e-80
Identity = 133/246 (54.07%), Postives = 179/246 (72.76%), Query Frame = 1
Query:   34 ALAG---FSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGRRYVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGMTEAWSVSDVDDMAYDAQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMILSTNVESMMLGPDGTGAL 762
            ALAG   F+AGA Q+QSIE +SVSPDGKTVL+ G+NR VY++S ++MEVT RRYVP +VRQI+H   G +V+ RD+   + AY    M+EAW   D D++ Y  +   +A LD+H+KDDS+RL+ A +G Q AR+A+GK+K ++ AL P    ALILT  +K+DAE K+DEP D+TKLQKADFKQ TDGYVS V+ VDF  G F  AE+ YRVS+P  V + DGK++IL +N++S ++G DG+  L
Sbjct:    7 ALAGLLLFAAGA-QAQSIEGLSVSPDGKTVLMSGTNRVVYSVSTETMEVTDRRYVPQMVRQIIHSDDGSMVYLRDNDKRLIAYNTADMSEAWRTEDADEVVYAPEQGTLAILDEHWKDDSIRLMAADSGSQTARIALGKMKTDMFALGPDGRSALILTQSSKSDAEVKKDEPADMTKLQKADFKQRTDGYVSQVIAVDFDLGEFTQAESHYRVSFPHDVNMVDGKLLILRSNLDSAIVGSDGSAEL 251          
BLAST of mRNA_C-australica_Contig_10298.1.1 vs. uniprot
Match: A0A3M2EGZ1_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2EGZ1_9PROT)

HSP 1 Score: 85.1 bits (209), Expect = 1.440e-15
Identity = 65/244 (26.64%), Postives = 115/244 (47.13%), Query Frame = 1
Query:   34 ALAGFSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTISADSMEVTGRRYVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGMTEAWSVSDVDDMAYD-AQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKANLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVSNVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMILSTNVESMMLGPDGTGAL 762
            ALA  +A    +  I ++SVSPDG+TVL    NR VY +    + V  R ++      I H A G  V  R     + A+  +G  E W VS    + +  A  +V+ A+ Q  ++  + +L A++ E +A   +G+++   +A+ P  G+  +L    K ++E++Q+ P  L  L +  F Q  D   + +VT+D  SG     ++ Y     + +  +    ++L+       + P G  AL
Sbjct:   13 ALAATAAADTPANGIGSLSVSPDGRTVLAAAENRVVYVLDGQDLSVRERIWIKVSPVWIRHVAGGRQVLVRGTQGELIAFDSEGFEELWRVSRTAAVDHARAADQVVFAVRQG-RNTIIGVLDAASTETVASFDLGEMRVREVAISPDGGRITVLGVDDKRESEERQNPPAGLADLAREQFAQEHDQRGARIVTIDVASGQITAVDSWYSGKTVRGMAFAGDDTIVLAHGRNVARISPAGEVAL 255          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10298.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A222DYY2_9RHOB5.220e-16597.64Uncharacterized protein n=3 Tax=Roseobacteraceae T... [more]
A0A0B3SR94_9RHOB1.640e-12173.62Uncharacterized protein n=6 Tax=Roseobacteraceae T... [more]
UPI001C95E85B2.540e-11871.26hypothetical protein n=2 Tax=Rhodobacterales TaxID... [more]
A0A238J6E6_9RHOB2.440e-8054.07Uncharacterized protein n=1 Tax=Pelagimonas phthal... [more]
A0A3M2EGZ1_9PROT1.440e-1526.64Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10298contigC-australica_Contig_10298:67..828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog313606.M23134_02378
Model size762
Max annot lvl2|Bacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.53e-08
EggNOG OGs2B96C@1|root,322HH@2|Bacteria
Cds size762
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586765.4214246-CDS-C-australica_Contig_10298:66..8281682586765.4214246-CDS-C-australica_Contig_10298:66..828Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10298 67..828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10298.1.1prot_C-australica_Contig_10298.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10298 67..828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10298.1.1

>prot_C-australica_Contig_10298.1.1 ID=prot_C-australica_Contig_10298.1.1|Name=mRNA_C-australica_Contig_10298.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=254bp
MRSIFSFAAALALAGFSAGAAQSQSIETISVSPDGKTVLVGGSNRTVYTI
SADSMEVTGRRYVPHLVRQIVHGAIGELVFFRDDADVVTAYKVDGMTEAW
SVSDVDDMAYDAQTRVIAALDQHFKDDSVRLLQASTGEQLARVAMGKIKA
NLIALEPGAGKALILTGYTKTDAEQKQDEPEDLTKLQKADFKQMTDGYVS
NVVTVDFVSGSFEMAETPYRVSYPKAVRVSDGKMMILSTNVESMMLGPDG
TGAL
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mRNA from alignment at C-australica_Contig_10298:67..828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10298.1.1 ID=mRNA_C-australica_Contig_10298.1.1|Name=mRNA_C-australica_Contig_10298.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=762bp|location=Sequence derived from alignment at C-australica_Contig_10298:67..828+ (Chrysoparadoxa australica CS_1217)
ATGCGTTCCATTTTTTCCTTTGCAGCGGCGCTTGCGCTGGCCGGGTTTTC TGCCGGCGCTGCCCAATCCCAGTCCATTGAGACAATCAGTGTATCGCCTG ACGGCAAGACGGTGCTTGTCGGCGGATCAAACCGGACAGTCTATACAATT TCCGCCGACTCGATGGAGGTGACCGGGCGCCGGTATGTGCCCCATCTGGT GCGCCAGATCGTGCATGGTGCCATCGGAGAGTTGGTGTTTTTCCGCGATG ATGCGGATGTCGTGACCGCCTACAAGGTCGATGGCATGACCGAGGCGTGG TCCGTGTCGGATGTCGATGACATGGCCTATGATGCGCAAACGCGGGTGAT CGCCGCGCTGGATCAGCATTTCAAGGACGATTCGGTGCGATTGTTGCAGG CCTCCACGGGCGAACAGCTGGCGCGCGTTGCCATGGGCAAGATCAAGGCG AATCTGATCGCCTTGGAACCGGGGGCGGGCAAGGCGCTGATCCTGACCGG CTATACCAAGACCGATGCCGAGCAGAAACAGGATGAGCCTGAGGATCTGA CCAAGCTGCAAAAGGCCGATTTCAAGCAAATGACAGATGGCTATGTCAGC AACGTGGTCACGGTTGATTTTGTCTCGGGCAGTTTCGAGATGGCCGAGAC ACCCTATCGTGTTTCTTACCCCAAGGCCGTGCGGGTGAGTGATGGCAAGA TGATGATTTTGAGCACCAATGTGGAGTCGATGATGCTGGGCCCGGATGGC ACCGGCGCGCTG
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Coding sequence (CDS) from alignment at C-australica_Contig_10298:67..828+

>mRNA_C-australica_Contig_10298.1.1 ID=mRNA_C-australica_Contig_10298.1.1|Name=mRNA_C-australica_Contig_10298.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=762bp|location=Sequence derived from alignment at C-australica_Contig_10298:67..828+ (Chrysoparadoxa australica CS_1217)
ATGCGTTCCATTTTTTCCTTTGCAGCGGCGCTTGCGCTGGCCGGGTTTTC
TGCCGGCGCTGCCCAATCCCAGTCCATTGAGACAATCAGTGTATCGCCTG
ACGGCAAGACGGTGCTTGTCGGCGGATCAAACCGGACAGTCTATACAATT
TCCGCCGACTCGATGGAGGTGACCGGGCGCCGGTATGTGCCCCATCTGGT
GCGCCAGATCGTGCATGGTGCCATCGGAGAGTTGGTGTTTTTCCGCGATG
ATGCGGATGTCGTGACCGCCTACAAGGTCGATGGCATGACCGAGGCGTGG
TCCGTGTCGGATGTCGATGACATGGCCTATGATGCGCAAACGCGGGTGAT
CGCCGCGCTGGATCAGCATTTCAAGGACGATTCGGTGCGATTGTTGCAGG
CCTCCACGGGCGAACAGCTGGCGCGCGTTGCCATGGGCAAGATCAAGGCG
AATCTGATCGCCTTGGAACCGGGGGCGGGCAAGGCGCTGATCCTGACCGG
CTATACCAAGACCGATGCCGAGCAGAAACAGGATGAGCCTGAGGATCTGA
CCAAGCTGCAAAAGGCCGATTTCAAGCAAATGACAGATGGCTATGTCAGC
AACGTGGTCACGGTTGATTTTGTCTCGGGCAGTTTCGAGATGGCCGAGAC
ACCCTATCGTGTTTCTTACCCCAAGGCCGTGCGGGTGAGTGATGGCAAGA
TGATGATTTTGAGCACCAATGTGGAGTCGATGATGCTGGGCCCGGATGGC
ACCGGCGCGCTG
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