mRNA_C-australica_Contig_10287.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10287.1.1
Unique NamemRNA_C-australica_Contig_10287.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10287.1.1 vs. uniprot
Match: A0A222E610_9RHOB ((R)-citramalate synthase n=11 Tax=Rhodobacterales TaxID=204455 RepID=A0A222E610_9RHOB)

HSP 1 Score: 521 bits (1342), Expect = 2.420e-182
Identity = 273/276 (98.91%), Postives = 274/276 (99.28%), Query Frame = 1
Query:    1 IPTLLLKAPYKDMFEIGVTDEALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDPATYEHVDPALVGNRRVVPMSNQAGQSNLRRRLGEMGLEVDKSEPALARILDRVKELESEGYSYDTAQASFELLARDELGLLPEFFEVKRYRVTVERRKNKYNKMVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 828
            IPTLLLKAPYKD FEIGVTDEALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDP TYEHVDPAL+GNRRVVPMSNQAGQSNLRRRLGEMGLEVDKSEPALARILDRVKELESEGYSYDTAQASFELLARDELGLLPEFFEVKRYRVTVERRKNKYNKMVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL
Sbjct:  249 IPTLLLKAPYKDKFEIGVTDEALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDPTTYEHVDPALMGNRRVVPMSNQAGQSNLRRRLGEMGLEVDKSEPALARILDRVKELESEGYSYDTAQASFELLARDELGLLPEFFEVKRYRVTVERRKNKYNKMVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 524          
BLAST of mRNA_C-australica_Contig_10287.1.1 vs. uniprot
Match: A0A6F8Q5Y0_9RHOB (Cysteine--tRNA ligase n=2 Tax=Mameliella alba TaxID=561184 RepID=A0A6F8Q5Y0_9RHOB)

HSP 1 Score: 500 bits (1287), Expect = 1.060e-167
Identity = 260/276 (94.20%), Postives = 268/276 (97.10%), Query Frame = 1
Query:    1 IPTLLLKAPYKDMFEIGVTDEALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDPATYEHVDPALVGNRRVVPMSNQAGQSNLRRRLGEMGLEVDKSEPALARILDRVKELESEGYSYDTAQASFELLARDELGLLPEFFEVKRYRVTVERRKNKYNKMVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 828
            IPTLLLKAPYKD+FE GV+ EALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDP TYEH+DP LVGNRRVVPMSNQAGQSNLRRRL EMGLEVDK +PALARILDRVK  E+EGYSYDTAQASFELLARDELG+LPEFFEVKRYRVTVERRKNKY++MVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL
Sbjct:  741 IPTLLLKAPYKDLFETGVSMEALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDPTTYEHIDPGLVGNRRVVPMSNQAGQSNLRRRLSEMGLEVDKGDPALARILDRVKARETEGYSYDTAQASFELLARDELGMLPEFFEVKRYRVTVERRKNKYDRMVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 1016          
BLAST of mRNA_C-australica_Contig_10287.1.1 vs. uniprot
Match: A0A238L4T8_9RHOB ((R)-citramalate synthase n=1 Tax=Maliponia aquimaris TaxID=1673631 RepID=A0A238L4T8_9RHOB)

HSP 1 Score: 476 bits (1225), Expect = 1.300e-164
Identity = 249/276 (90.22%), Postives = 258/276 (93.48%), Query Frame = 1
Query:    1 IPTLLLKAPYKDMFEIGVTDEALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDPATYEHVDPALVGNRRVVPMSNQAGQSNLRRRLGEMGLEVDKSEPALARILDRVKELESEGYSYDTAQASFELLARDELGLLPEFFEVKRYRVTVERRKNKYNKMVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 828
            IPTLLLK PY   FE GV  EAL GLTR SRMLDD+LNRVPQKQVAYVGASAFAHKAGLHASAILKDP TYEH+DPALVGNRRVVPMSNQAGQSNLR+RL E GLEV  ++PALARILD+VK  ESEGYSYDTAQASFE+LAR+ELGLLPEFFEVKRYRVTVERRKNKYN+MVSLSEAVVVVKVDGEKKLSVSESMDE GNDRGPVNALSKALAKDLGRYQ AIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL
Sbjct:  249 IPTLLLKEPYASRFETGVDREALEGLTRISRMLDDVLNRVPQKQVAYVGASAFAHKAGLHASAILKDPTTYEHIDPALVGNRRVVPMSNQAGQSNLRKRLAEAGLEVAPTDPALARILDKVKARESEGYSYDTAQASFEILAREELGLLPEFFEVKRYRVTVERRKNKYNRMVSLSEAVVVVKVDGEKKLSVSESMDEDGNDRGPVNALSKALAKDLGRYQAAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 524          
BLAST of mRNA_C-australica_Contig_10287.1.1 vs. uniprot
Match: A0A316KNW4_9RHOB (Citramalate synthase (Fragment) n=1 Tax=Marivita sp. XM-24bin2 TaxID=2133951 RepID=A0A316KNW4_9RHOB)

HSP 1 Score: 462 bits (1189), Expect = 7.790e-161
Identity = 238/276 (86.23%), Postives = 254/276 (92.03%), Query Frame = 1
Query:    1 IPTLLLKAPYKDMFEIGVTDEALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDPATYEHVDPALVGNRRVVPMSNQAGQSNLRRRLGEMGLEVDKSEPALARILDRVKELESEGYSYDTAQASFELLARDELGLLPEFFEVKRYRVTVERRKNKYNKMVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 828
            IPTLLLK PY   +E GVT EAL G+TR SRMLD+ILNRVP KQ AYVG+SAFAHKAGLHASAILK+P TYEH+DP LVGNRRV+PMSNQAGQSNLRRRL E G+EV   +PALARILDR+K  E+EGYSYDTAQASFELLARDELG+LPEFFEVKRYRVTVERRKNKYNKM+S SEAVVVVKVDG+KKLSVSESMDE GNDRGPVNALSKALAKDLGRYQ+ IDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANI+DASFEAL
Sbjct:  134 IPTLLLKEPYASSYETGVTLEALEGMTRISRMLDEILNRVPLKQSAYVGSSAFAHKAGLHASAILKNPTTYEHIDPGLVGNRRVIPMSNQAGQSNLRRRLAEAGIEVPDKDPALARILDRIKAREAEGYSYDTAQASFELLARDELGMLPEFFEVKRYRVTVERRKNKYNKMISHSEAVVVVKVDGDKKLSVSESMDELGNDRGPVNALSKALAKDLGRYQDLIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIIDASFEAL 409          
BLAST of mRNA_C-australica_Contig_10287.1.1 vs. uniprot
Match: UPI000EF4680A (citramalate synthase n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF4680A)

HSP 1 Score: 466 bits (1198), Expect = 1.510e-160
Identity = 245/276 (88.77%), Postives = 253/276 (91.67%), Query Frame = 1
Query:    1 IPTLLLKAPYKDMFEIGVTDEALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDPATYEHVDPALVGNRRVVPMSNQAGQSNLRRRLGEMGLEVDKSEPALARILDRVKELESEGYSYDTAQASFELLARDELGLLPEFFEVKRYRVTVERRKNKYNKMVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 828
            IPTL LK PY   FEIGV+D AL GLT TSRMLDDILNRVP KQVAYVGASAFAHKAGLHASAILKDP+TYEHVDP LVGNRRVVPMSNQAGQSNLR RL   GL VDK +PALARILDRVK  E+EGYSYDTAQASFELLARDELG +P+FFEVKRYRVTVERRKNKYN+MVSLSEAVVVVKVDGEKKLSVSESMDE GNDRGPVNAL+KALAKDLG YQ  IDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL
Sbjct:  248 IPTLKLKEPYASRFEIGVSDAALEGLTYTSRMLDDILNRVPAKQVAYVGASAFAHKAGLHASAILKDPSTYEHVDPGLVGNRRVVPMSNQAGQSNLRERLTAAGLVVDKGDPALARILDRVKAREAEGYSYDTAQASFELLARDELGQMPDFFEVKRYRVTVERRKNKYNRMVSLSEAVVVVKVDGEKKLSVSESMDEIGNDRGPVNALAKALAKDLGPYQAVIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 523          
BLAST of mRNA_C-australica_Contig_10287.1.1 vs. uniprot
Match: A3JYN8_9RHOB ((R)-citramalate synthase n=3 Tax=Sagittula TaxID=58842 RepID=A3JYN8_9RHOB)

HSP 1 Score: 462 bits (1190), Expect = 2.550e-159
Identity = 243/276 (88.04%), Postives = 252/276 (91.30%), Query Frame = 1
Query:    1 IPTLLLKAPYKDMFEIGVTDEALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDPATYEHVDPALVGNRRVVPMSNQAGQSNLRRRLGEMGLEVDKSEPALARILDRVKELESEGYSYDTAQASFELLARDELGLLPEFFEVKRYRVTVERRKNKYNKMVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 828
            IPTLLLK PY   +E GV+ EAL GLTR SRMLDD+LNRVP KQVAYVGASAFAHKAGLHASAILKDP TYEH+DPALVGNRRVVPMSNQAGQSNLRRRL E GLEV   +PALARIL+ VK  E+EGYSYDTAQASFELLAR+ELGLLPEFFEVKRYRVTVERRKNKYN+MVSLSEAVVVVKVDGEKKLSVSESMDE GNDRGPVNALSKALAKDLG YQ  IDDMRLVDFKVRITQGGTEAVTRVIIDSED  GRRWATVGVSANIVDASFEAL
Sbjct:  249 IPTLLLKEPYASRYETGVSHEALEGLTRVSRMLDDVLNRVPLKQVAYVGASAFAHKAGLHASAILKDPTTYEHIDPALVGNRRVVPMSNQAGQSNLRRRLAEAGLEVAPGDPALARILELVKTREAEGYSYDTAQASFELLAREELGLLPEFFEVKRYRVTVERRKNKYNRMVSLSEAVVVVKVDGEKKLSVSESMDEEGNDRGPVNALSKALAKDLGSYQAYIDDMRLVDFKVRITQGGTEAVTRVIIDSEDSSGRRWATVGVSANIVDASFEAL 524          
BLAST of mRNA_C-australica_Contig_10287.1.1 vs. uniprot
Match: A0A0P1GQ39_9RHOB ((R)-citramalate synthase n=2 Tax=Tropicibacter naphthalenivorans TaxID=441103 RepID=A0A0P1GQ39_9RHOB)

HSP 1 Score: 461 bits (1186), Expect = 1.030e-158
Identity = 240/276 (86.96%), Postives = 253/276 (91.67%), Query Frame = 1
Query:    1 IPTLLLKAPYKDMFEIGVTDEALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDPATYEHVDPALVGNRRVVPMSNQAGQSNLRRRLGEMGLEVDKSEPALARILDRVKELESEGYSYDTAQASFELLARDELGLLPEFFEVKRYRVTVERRKNKYNKMVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 828
            IPTLLLK PY   F+ GVT EAL GLTR +RMLDDILNRVP KQVAYVGASAFAHKAGLHASAILKDP TYEH++P LVGNRRVVPMSNQAGQSNLRRRL + GL V+K +PALARILDRVK  E+EGYSYDTAQASFELLAR+ELG LPEFFEVKRYRVTVERRKNKY++MVSLSEAVVVVKV GEKKLSVSESMD+ GNDRGPVNAL+KALAKDLG YQ  IDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL
Sbjct:  248 IPTLLLKEPYASRFDTGVTAEALKGLTRVARMLDDILNRVPAKQVAYVGASAFAHKAGLHASAILKDPTTYEHIEPGLVGNRRVVPMSNQAGQSNLRRRLADAGLSVEKGDPALARILDRVKAREAEGYSYDTAQASFELLAREELGQLPEFFEVKRYRVTVERRKNKYDRMVSLSEAVVVVKVGGEKKLSVSESMDDCGNDRGPVNALAKALAKDLGPYQSMIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 523          
BLAST of mRNA_C-australica_Contig_10287.1.1 vs. uniprot
Match: A0A369TQI8_9RHOB ((R)-citramalate synthase n=1 Tax=Thalassococcus profundi TaxID=2282382 RepID=A0A369TQI8_9RHOB)

HSP 1 Score: 461 bits (1185), Expect = 1.560e-158
Identity = 241/276 (87.32%), Postives = 254/276 (92.03%), Query Frame = 1
Query:    1 IPTLLLKAPYKDMFEIGVTDEALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDPATYEHVDPALVGNRRVVPMSNQAGQSNLRRRLGEMGLEVDKSEPALARILDRVKELESEGYSYDTAQASFELLARDELGLLPEFFEVKRYRVTVERRKNKYNKMVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 828
            IPTL+LK PY+D FEIGVT EAL GLTR SRMLDDILNRVP KQ+AYVG SAFAHKAGLHASAILK+PATYEH+DPALVGNRR VPMSNQAGQSNLRRRL E GLEVD  +PAL RIL+ VK  E+EGYSYDTA+ASFELLAR ELG LPEFFEVKRYRVTVERRKNK N+MVSLSEAVVVVKVDGEKKLSVSESMDE G+DRGPVNALSKALAKDLGRYQ AI+DMRLVDFKVRITQGGTEAVTRVIIDSEDG GRRW+TVGVSANIVDASFEAL
Sbjct:  249 IPTLMLKPPYRDQFEIGVTAEALEGLTRLSRMLDDILNRVPLKQLAYVGGSAFAHKAGLHASAILKNPATYEHIDPALVGNRRFVPMSNQAGQSNLRRRLAEAGLEVDPGDPALGRILEAVKAREAEGYSYDTAEASFELLARAELGRLPEFFEVKRYRVTVERRKNKRNRMVSLSEAVVVVKVDGEKKLSVSESMDETGSDRGPVNALSKALAKDLGRYQTAIEDMRLVDFKVRITQGGTEAVTRVIIDSEDGAGRRWSTVGVSANIVDASFEAL 524          
BLAST of mRNA_C-australica_Contig_10287.1.1 vs. uniprot
Match: X6L182_9RHOB ((R)-citramalate synthase n=1 Tax=Rhodobacteraceae bacterium PD-2 TaxID=1169855 RepID=X6L182_9RHOB)

HSP 1 Score: 459 bits (1182), Expect = 4.040e-158
Identity = 238/276 (86.23%), Postives = 254/276 (92.03%), Query Frame = 1
Query:    1 IPTLLLKAPYKDMFEIGVTDEALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDPATYEHVDPALVGNRRVVPMSNQAGQSNLRRRLGEMGLEVDKSEPALARILDRVKELESEGYSYDTAQASFELLARDELGLLPEFFEVKRYRVTVERRKNKYNKMVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 828
            IPTLLLK PY   +E GV+ EAL GLTRTSRMLDDILNRVP +Q+AYVG+SAFAHKAGLHASAILKDP TYEH+DP +VGNRRVVPMSNQAGQSNLRRRL E GLEV+   PALARILD +K  E+EGYSYDTAQASFELLAR ELG+LP+FFEVKRYRVTVERRKNKY++MVSLSEAVVV+KVDGEKKLSVSESMDE G DRGPVNALSKALAKDLGRYQE IDDMRLVDFKVRITQGGTEAVTRVIIDSEDG+GRRWATVGVSANIVDASFEAL
Sbjct:  249 IPTLLLKEPYASAYETGVSMEALEGLTRTSRMLDDILNRVPMRQMAYVGSSAFAHKAGLHASAILKDPTTYEHIDPGVVGNRRVVPMSNQAGQSNLRRRLAEAGLEVEPGNPALARILDLIKTREAEGYSYDTAQASFELLARSELGMLPDFFEVKRYRVTVERRKNKYDRMVSLSEAVVVLKVDGEKKLSVSESMDEEGCDRGPVNALSKALAKDLGRYQELIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGEGRRWATVGVSANIVDASFEAL 524          
BLAST of mRNA_C-australica_Contig_10287.1.1 vs. uniprot
Match: A0A4S4NKS7_9RHOB ((R)-citramalate synthase n=1 Tax=Aliishimia ponticola TaxID=2499833 RepID=A0A4S4NKS7_9RHOB)

HSP 1 Score: 459 bits (1182), Expect = 4.310e-158
Identity = 236/276 (85.51%), Postives = 257/276 (93.12%), Query Frame = 1
Query:    1 IPTLLLKAPYKDMFEIGVTDEALAGLTRTSRMLDDILNRVPQKQVAYVGASAFAHKAGLHASAILKDPATYEHVDPALVGNRRVVPMSNQAGQSNLRRRLGEMGLEVDKSEPALARILDRVKELESEGYSYDTAQASFELLARDELGLLPEFFEVKRYRVTVERRKNKYNKMVSLSEAVVVVKVDGEKKLSVSESMDEAGNDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGRRWATVGVSANIVDASFEAL 828
            IPTL LKAPY D  +IGV+D+AL GLTR SRMLDDILNRVP KQ AYVG+SAFAHKAGLHASAILK+PATYEHVDPA VGN R++PMSNQAGQSNLR+RL E GLEV+  +PALARILDRVK+ E+EGYSYDTAQASFELLARDELG +P+ FEVKRYRV+VERRKNKY++MVSLSEAVVVVKVDGEKKLSVSESMDE G+DRGPVNALSKALAKDLGRYQ+AIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQG+RW+TVGVS NIVDASFEAL
Sbjct:  249 IPTLKLKAPYADTLDIGVSDDALEGLTRVSRMLDDILNRVPMKQSAYVGSSAFAHKAGLHASAILKNPATYEHVDPARVGNSRIIPMSNQAGQSNLRKRLAEAGLEVEAGDPALARILDRVKDREAEGYSYDTAQASFELLARDELGRMPDLFEVKRYRVSVERRKNKYDRMVSLSEAVVVVKVDGEKKLSVSESMDETGSDRGPVNALSKALAKDLGRYQDAIDDMRLVDFKVRITQGGTEAVTRVIIDSEDGQGKRWSTVGVSPNIVDASFEAL 524          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10287.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E610_9RHOB2.420e-18298.91(R)-citramalate synthase n=11 Tax=Rhodobacterales ... [more]
A0A6F8Q5Y0_9RHOB1.060e-16794.20Cysteine--tRNA ligase n=2 Tax=Mameliella alba TaxI... [more]
A0A238L4T8_9RHOB1.300e-16490.22(R)-citramalate synthase n=1 Tax=Maliponia aquimar... [more]
A0A316KNW4_9RHOB7.790e-16186.23Citramalate synthase (Fragment) n=1 Tax=Marivita s... [more]
UPI000EF4680A1.510e-16088.77citramalate synthase n=1 Tax=Tropicibacter sp. LMI... [more]
A3JYN8_9RHOB2.550e-15988.04(R)-citramalate synthase n=3 Tax=Sagittula TaxID=5... [more]
A0A0P1GQ39_9RHOB1.030e-15886.96(R)-citramalate synthase n=2 Tax=Tropicibacter nap... [more]
A0A369TQI8_9RHOB1.560e-15887.32(R)-citramalate synthase n=1 Tax=Thalassococcus pr... [more]
X6L182_9RHOB4.040e-15886.23(R)-citramalate synthase n=1 Tax=Rhodobacteraceae ... [more]
A0A4S4NKS7_9RHOB4.310e-15885.51(R)-citramalate synthase n=1 Tax=Aliishimia pontic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10287contigC-australica_Contig_10287:2..829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog388399.SSE37_07283
Preferred nameMA20_26350
PFAMsHMGL-like,LeuA_dimer
Model size828
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00004,RC00470,RC02754
KEGG koko:K01649
KEGG ReactionR01213
KEGG Pathwayko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230
KEGG ModuleM00432
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.19e-160
EggNOG OGsCOG0119@1|root,COG0119@2|Bacteria,1MUNQ@1224|Proteobacteria,2TSK4@28211|Alphaproteobacteria
EC2.3.3.13
DescriptionBelongs to the alpha-IPM synthase homocitrate synthase family
Cds size828
COG categoryE
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586764.7239738-CDS-C-australica_Contig_10287:1..8291682586764.7239738-CDS-C-australica_Contig_10287:1..829Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10287 2..829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10287.1.1prot_C-australica_Contig_10287.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10287 2..829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10287.1.1

>prot_C-australica_Contig_10287.1.1 ID=prot_C-australica_Contig_10287.1.1|Name=mRNA_C-australica_Contig_10287.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=276bp
IPTLLLKAPYKDMFEIGVTDEALAGLTRTSRMLDDILNRVPQKQVAYVGA
SAFAHKAGLHASAILKDPATYEHVDPALVGNRRVVPMSNQAGQSNLRRRL
GEMGLEVDKSEPALARILDRVKELESEGYSYDTAQASFELLARDELGLLP
EFFEVKRYRVTVERRKNKYNKMVSLSEAVVVVKVDGEKKLSVSESMDEAG
NDRGPVNALSKALAKDLGRYQEAIDDMRLVDFKVRITQGGTEAVTRVIID
SEDGQGRRWATVGVSANIVDASFEAL
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mRNA from alignment at C-australica_Contig_10287:2..829-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10287.1.1 ID=mRNA_C-australica_Contig_10287.1.1|Name=mRNA_C-australica_Contig_10287.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=828bp|location=Sequence derived from alignment at C-australica_Contig_10287:2..829- (Chrysoparadoxa australica CS_1217)
ATCCCGACCTTGCTGTTGAAAGCGCCCTATAAGGATATGTTCGAGATTGG CGTCACCGATGAGGCGCTCGCCGGGTTGACCCGCACCAGCCGGATGCTGG ACGACATCCTGAACCGGGTGCCGCAAAAGCAAGTTGCCTATGTTGGGGCG TCTGCCTTTGCCCATAAGGCTGGTCTGCACGCCAGCGCGATCCTCAAGGA CCCGGCCACCTATGAGCATGTCGACCCCGCGCTGGTGGGCAACCGCCGCG TGGTGCCAATGTCCAATCAGGCGGGGCAGTCGAACCTGCGCAGGCGGCTG GGCGAGATGGGGCTGGAGGTCGACAAGAGCGAGCCGGCGCTTGCCCGAAT CCTCGACCGCGTCAAGGAACTGGAGAGTGAGGGGTATTCCTATGACACCG CGCAGGCCAGTTTTGAGCTGCTGGCGCGGGATGAACTGGGACTGCTGCCC GAGTTTTTTGAGGTCAAACGCTACCGGGTGACGGTGGAGCGGCGCAAGAA CAAGTACAACAAGATGGTGTCCCTGTCCGAGGCGGTGGTTGTCGTGAAGG TAGACGGCGAAAAGAAACTGTCTGTGTCGGAATCGATGGACGAGGCGGGC AATGACCGCGGCCCGGTCAACGCGCTGTCCAAGGCATTGGCAAAGGATCT GGGCCGTTACCAAGAGGCGATCGACGACATGCGATTGGTCGACTTCAAGG TGCGCATCACACAGGGCGGCACGGAGGCGGTGACGCGCGTCATCATCGAC AGTGAGGATGGGCAGGGGCGTCGGTGGGCCACCGTCGGTGTCAGCGCCAA CATCGTGGATGCCTCGTTCGAGGCGCTG
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Coding sequence (CDS) from alignment at C-australica_Contig_10287:2..829-

>mRNA_C-australica_Contig_10287.1.1 ID=mRNA_C-australica_Contig_10287.1.1|Name=mRNA_C-australica_Contig_10287.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=828bp|location=Sequence derived from alignment at C-australica_Contig_10287:2..829- (Chrysoparadoxa australica CS_1217)
ATCCCGACCTTGCTGTTGAAAGCGCCCTATAAGGATATGTTCGAGATTGG
CGTCACCGATGAGGCGCTCGCCGGGTTGACCCGCACCAGCCGGATGCTGG
ACGACATCCTGAACCGGGTGCCGCAAAAGCAAGTTGCCTATGTTGGGGCG
TCTGCCTTTGCCCATAAGGCTGGTCTGCACGCCAGCGCGATCCTCAAGGA
CCCGGCCACCTATGAGCATGTCGACCCCGCGCTGGTGGGCAACCGCCGCG
TGGTGCCAATGTCCAATCAGGCGGGGCAGTCGAACCTGCGCAGGCGGCTG
GGCGAGATGGGGCTGGAGGTCGACAAGAGCGAGCCGGCGCTTGCCCGAAT
CCTCGACCGCGTCAAGGAACTGGAGAGTGAGGGGTATTCCTATGACACCG
CGCAGGCCAGTTTTGAGCTGCTGGCGCGGGATGAACTGGGACTGCTGCCC
GAGTTTTTTGAGGTCAAACGCTACCGGGTGACGGTGGAGCGGCGCAAGAA
CAAGTACAACAAGATGGTGTCCCTGTCCGAGGCGGTGGTTGTCGTGAAGG
TAGACGGCGAAAAGAAACTGTCTGTGTCGGAATCGATGGACGAGGCGGGC
AATGACCGCGGCCCGGTCAACGCGCTGTCCAAGGCATTGGCAAAGGATCT
GGGCCGTTACCAAGAGGCGATCGACGACATGCGATTGGTCGACTTCAAGG
TGCGCATCACACAGGGCGGCACGGAGGCGGTGACGCGCGTCATCATCGAC
AGTGAGGATGGGCAGGGGCGTCGGTGGGCCACCGTCGGTGTCAGCGCCAA
CATCGTGGATGCCTCGTTCGAGGCGCTG
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