mRNA_C-australica_Contig_1028.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1028.2.1
Unique NamemRNA_C-australica_Contig_1028.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1028.2.1 vs. uniprot
Match: A0A6H5L351_9PHAE (DNMT1-RFD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L351_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 4.450e-38
Identity = 87/229 (37.99%), Postives = 118/229 (51.53%), Query Frame = 1 
Query:    1 DEFIDRGSFRLARYGTRSAAREDDSGAVATANKSSTWGCIWVPQRRTLRIKLTALEDWCIDYSIAGKPVLWIISKYAWYKVAGGSWWDKVQSAPHYASTFTPTERKFRLMSLVMRALTANPNLTLSQVARRADAGTSGELTIQDLVQHHSFIL-------------------GQLEGLV-------PFVVTTQAGATQEVYPPDSQFAIGLAEAGNDWESAGATATITP 609
            DE++D  SFRLA  G+RS+A+ +   A   A K S   C+ VP RRT+RI++  ++DWCIDYS    PVLWIIS +AWYKVAG  WWD V   P YA  F P+ + F L  LV RAL ++P  +L+ V RR    TSG    +D+V+ H  +                    G L+G+        P       G++  V   D+ F   LA  G +WE+ G +    P
Sbjct:  229 DEWMDWESFRLAPCGSRSSAKREGESASTAARKESLTRCVLVPARRTVRIRINCVDDWCIDYSDTNHPVLWIISGHAWYKVAGSGWWDFVAPHPIYAPVFEPSRKSFALTCLVARALQSSPTSSLAAVGRRVSQITSGVFETRDIVEEHEVVAATIAGMGALSTKKKPDNAEGMLDGVGEDGPGSWPGANGDNNGSSDSVDAKDTLFLKELATKGQEWEANGRSFVRRP 457
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BLAST of mRNA_C-australica_Contig_1028.2.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 8.360e-38
Identity = 73/159 (45.91%), Postives = 98/159 (61.64%), Query Frame = 1 
Query:    1 DEFIDRGSFRLARYGTRSAAREDDSGAVATANKSSTWGCIWVPQRRTLRIKLTALEDWCIDYSIAGKPVLWIISKYAWYKVAGGSWWDKVQSAPHYASTFTPTERKFRLMSLVMRALTANPNLTLSQVARRADAGTSGELTIQDLVQHHSFILGQLEGL 477
            DE++D  SFRLA  G+RS+A+ +   A   A K S   C+ VP RRT+RI++  ++DWCIDYS    PVLWIIS +AWYKVAG  WWD V   P YA  F P+ + F L  LV RAL ++P  +L+ V RR    TSG    +D+V+ H  +   + G+
Sbjct:  108 DEWMDWESFRLAPCGSRSSAKREGESASTAARKESLTRCVLVPARRTVRIRINCVDDWCIDYSDTNHPVLWIISGHAWYKVAGSGWWDFVAPHPIYAPVFEPSRKSFALTCLVARALQSSPTSSLAAVGRRVSQITSGVFETRDIVEEHEVVAATIAGM 266
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BLAST of mRNA_C-australica_Contig_1028.2.1 vs. uniprot
Match: A0A835ZDW7_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW7_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.560e-35
Identity = 70/161 (43.48%), Postives = 106/161 (65.84%), Query Frame = 1 
Query:    1 DEFIDRGSFRLARYGTRSAAREDDSGAVATANKSSTWGCIWVPQRRTLRIKLTALEDWCIDYSIAGKPVLWIISKYAWYKVAGGSWWDKVQSAPHYASTFTPTERKFRLMSLVMRALTANPNLTLSQVARR--ADAGTSGELTIQDLVQHHSFILGQLEGL 477
            DE I R SFRLA YGTRS A  D  GA +   K  +W C+WVP R+T R+++ A+ DWC+D+S+  +P+LW+IS+ AWY V G SWWD+V+  P YA    P+  +F+L S ++R +   PN++L+ + +R  A +G  G + ++DL+++  +I  QLE L
Sbjct:  422 DEDIPRDSFRLAPYGTRSVA--DGGGAPSHLKKDKSWLCMWVPGRQTARVRIGAIVDWCVDFSVPARPLLWLISEAAWYLVGGESWWDQVRPHPTYARVCAPSNYRFQLASALVRGMQPQPNMSLNLIGKRLQASSGMWGFM-VRDLIENFPYIHQQLESL 579
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BLAST of mRNA_C-australica_Contig_1028.2.1 vs. uniprot
Match: A0A6G0WE00_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WE00_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.010e-8
Identity = 41/117 (35.04%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:  145 RIKLTALEDWCIDYSIAGKPVLWIISKYAWYKVAG--GSWWDKVQSAPHYASTFTPTERKFRLMSLVMRALTANPNL----TLSQVARRADAGTSGELTIQDLVQHHSFILGQLEGL 477
            RI L  + DWC+DYS  G P LW+I+K+AWYK+AG            PH+       E  F +  ++   L  NP L    TL QV  ++  G    LT + +++++ FI  QL  L
Sbjct:  506 RIWLPEISDWCLDYS-DGDPTLWVITKHAWYKIAGPISGMLPHWSYRPHFTKPRLMFEACFHIAFVLREWLPKNPGLSYRATLQQVIEQSILGRY-PLTTKFMIENYKFIASQLGSL 620
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BLAST of mRNA_C-australica_Contig_1028.2.1 vs. uniprot
Match: A0A485LQJ0_9STRA (Aste57867_24503 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQJ0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.730e-7
Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 1 
Query:  145 RIKLTALEDWCIDYSIAGKPVLWIISKYAWYKVAGGSWWDKVQSAPH--YASTFTPT----ERKFRLMSLVMRALTANPNL----TLSQVARRADAGTSGELTIQDLVQHHSFILGQLEGL 477
            R+ L  + DWC+DYS  G P LW+I+K AWYK+AG          PH  Y S FT      E  F +  ++   L  NP L    TL QV  ++  G    LT + +++++ FI  QL  L
Sbjct:  521 RVWLPEITDWCLDYS-DGDPTLWVITKNAWYKIAG----PISGMLPHWSYRSQFTKPRLMFEACFHIAFVLREWLPKNPGLAYRSTLQQVIEQSILGRY-PLTTKFMIENYKFIASQLGNL 635
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1028.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L351_9PHAE4.450e-3837.99DNMT1-RFD domain-containing protein n=1 Tax=Ectoca... [more]
D7G6R7_ECTSI8.360e-3845.91Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZDW7_9STRA1.560e-3543.48Bromo domain-containing protein n=1 Tax=Tribonema ... [more]
A0A6G0WE00_9STRA4.010e-835.04Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LQJ0_9STRA5.730e-736.36Aste57867_24503 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1028contigC-australica_Contig_1028:2833..4876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6R7
PFAMsAuxin_resp,Bromodomain,DNMT1-RFD,DUF3591,WSD
Model size785
Max annot lvl2759|Eukaryota
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
Exons9
Evalue1.37e-38
EggNOG OGsCOG5179@1|root,KOG0008@2759|Eukaryota
Descriptionnegative regulation of protein autoubiquitination
Cds size783
COG categoryK
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1028.2.1prot_C-australica_Contig_1028.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1028 2833..4874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586764.0667145-CDS-C-australica_Contig_1028:2832..28701682586764.0667145-CDS-C-australica_Contig_1028:2832..2870Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1028 2833..2870 +
1682586764.0824463-CDS-C-australica_Contig_1028:2948..30331682586764.0824463-CDS-C-australica_Contig_1028:2948..3033Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1028 2949..3033 +
1682586764.094796-CDS-C-australica_Contig_1028:3259..33241682586764.094796-CDS-C-australica_Contig_1028:3259..3324Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1028 3260..3324 +
1682586764.106915-CDS-C-australica_Contig_1028:3525..35771682586764.106915-CDS-C-australica_Contig_1028:3525..3577Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1028 3526..3577 +
1682586764.1226985-CDS-C-australica_Contig_1028:3733..38051682586764.1226985-CDS-C-australica_Contig_1028:3733..3805Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1028 3734..3805 +
1682586764.1324623-CDS-C-australica_Contig_1028:3884..39841682586764.1324623-CDS-C-australica_Contig_1028:3884..3984Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1028 3885..3984 +
1682586764.1422033-CDS-C-australica_Contig_1028:4243..43501682586764.1422033-CDS-C-australica_Contig_1028:4243..4350Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1028 4244..4350 +
1682586764.151561-CDS-C-australica_Contig_1028:4515..46681682586764.151561-CDS-C-australica_Contig_1028:4515..4668Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1028 4516..4668 +
1682586764.1610634-CDS-C-australica_Contig_1028:4763..48741682586764.1610634-CDS-C-australica_Contig_1028:4763..4874Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1028 4764..4874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1028.2.1

>prot_C-australica_Contig_1028.2.1 ID=prot_C-australica_Contig_1028.2.1|Name=mRNA_C-australica_Contig_1028.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=261bp
DEFIDRGSFRLARYGTRSAAREDDSGAVATANKSSTWGCIWVPQRRTLRI
KLTALEDWCIDYSIAGKPVLWIISKYAWYKVAGGSWWDKVQSAPHYASTF
TPTERKFRLMSLVMRALTANPNLTLSQVARRADAGTSGELTIQDLVQHHS
FILGQLEGLVPFVVTTQAGATQEVYPPDSQFAIGLAEAGNDWESAGATAT
ITPAELLSLVEQREQRKEPKKDQKAPVKREHLSALPPDSELVKEVRAKAE
SQALKVKAAAA
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mRNA from alignment at C-australica_Contig_1028:2833..4876+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1028.2.1 ID=mRNA_C-australica_Contig_1028.2.1|Name=mRNA_C-australica_Contig_1028.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=2044bp|location=Sequence derived from alignment at C-australica_Contig_1028:2833..4876+ (Chrysoparadoxa australica CS_1217)
GACGAGTTCATTGACAGAGGGAGTTTCCGACTTGCTCGGTAGGAAATTGA
CTCCGTTTCTTCTCTTATTGACTTCTATTCGACCTTACATTGCTCCAATA
CCACTTGCGTGAGTAGGTATGGGACGCGTAGCGCAGCAAGGGAGGACGAC
TCAGGAGCTGTGGCCACAGCAAACAAGAGCAGCACTTGGGGCTGTATCTG
GGTAAGTGTGGGAGTGGGACTGTGTGGGAAAGGAAGGGAGAGCTGGCGGG
GAGTGGTAACATGGGAGAGTAAGTCAGTGAATAGATAGCATTATCATGAG
GCTTGTTCAAGTAGATGGCTTGCATCAGGGTCTTACTCATTGCTAGGCTA
CTATCCTACTGGTTAGCTGAGCAATTGTTGATTTAACTAGACCATGTGCT
TGCTCATAACCATGTTATATCAATTAGGTTCCACAACGGCGTACCTTACG
TATCAAGCTAACTGCACTGGAAGATTGGTGCATTGACTATAGGTAAGGAA
GGAGTCAGGGAAGGAACTAGCAGCTGCCATGATTTGCAATTTGTTGGTGT
CCTTTCACCTGCAGTTGGCGTATGTTGGGGCGGTGTAGTTAATCCTTTGT
CATGATACCATACGAGCCTTGCCTCCCTGGTTTATTGAGATAGCTTAGAT
CTACTAGCTCAAATTGGACCTGGTCCCTTCACCCCTATTGCAGTATTGCG
GGCAAGCCTGTATTGTGGATCATTAGCAAATATGCTTGGTACAAGGTGAG
AAGCAATAGAAGTATGAGTTATAGCATATCTTCAGCCGCAGCTTTTTCCA
CCTTACTGACGCTTGCATTGTTACATATCTTCCCTTGATACTAAGCTACT
GCTGAGAGAAAAAATGGCCATACTTACTTTACCTTGCTGCTTTTGGCTAA
GGTGGCTGGAGGATCCTGGTGGGATAAGGTCCAGTCTGCCCCTCATTATG
CCAGCACATTTACGCCCACAGAGGTGATATAAGCCGAATCTTGACCGTGA
TCTCAACCTAGACTCTGACCCGCAACTGTTAAACCCCACCTACCTATCAC
AGAGAAAATTTCGTTTGATGAGTTTGGTGATGCGCGCGTTGACTGCTAAC
CCTAACCTGACGCTGAGCCAAGTTGCTCGACGTGCAGACGCTGGTACCTC
AGGTAAGATATTCATTATTTGCGATACGTGCAGTAGAGCCTCTGACCATT
CCCTGCTGTTGATATCTCTGCCTTTTGACATTAGCATTGGGGCATTGGGG
CTGGCACCATACCTAACTTGCACTCTACCTATGCTGGATTGGCTCCTTAC
GCTCAGCTCCCTATCGCCCCCTCTCTTCATCTATTCTATTACCCCCTTCA
GTGAATCCTCTGGTAACCACTACACTTGCCATCCACCTTTATGCGCCTTT
TTGCTTTGCAGGGGAGCTGACTATCCAAGATTTGGTACAGCATCATTCAT
TTATCTTAGGGCAGTTAGAGGGGTTAGTGCCATTTGTTGTGACAACACAG
GCAGGCGCAACGCAAGAGGTATAAGGCAGGGCAGGGCAGAAGAAGAGATA
ACTTACCTTGCCTTGCTTGCCCTCACTTGACATCATTTACTTGCAAGCAG
CAGCTCTCACACATATACAATCCGCCTCATCCTACTTGTGGTATTCGCTT
GTTCACTTCTATGGAATACACCCGTGCCAACAGGTATACCCTCCAGACAG
CCAGTTTGCTATTGGTCTTGCTGAGGCAGGCAACGACTGGGAATCTGCTG
GTGCCACTGCCACAATAACTCCAGCTGAACTGCTCAGCTTAGTGGAGCAG
CGCGAGCAAAGAAAAGAGCCGAAGAAGGACCAGAAGGTTTTTTTTCACTA
CCAAGATCCTTGCCTGTGACCTTGCCCTTGACCCTGAACTCTGACTTCAT
TTGACTTTGGCCTTGCTTCGTCCTGCTTCAGGCTCCTGTGAAAAGGGAGC
ATCTTTCAGCTCTACCACCTGATTCTGAGCTCGTCAAGGAAGTGCGTGCC
AAGGCTGAGTCACAAGCACTAAAAGTCAAGGCTGCGGCTGCGCT
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Coding sequence (CDS) from alignment at C-australica_Contig_1028:2833..4876+

>mRNA_C-australica_Contig_1028.2.1 ID=mRNA_C-australica_Contig_1028.2.1|Name=mRNA_C-australica_Contig_1028.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=783bp|location=Sequence derived from alignment at C-australica_Contig_1028:2833..4876+ (Chrysoparadoxa australica CS_1217)
GACGAGTTCATTGACAGAGGGAGTTTCCGACTTGCTCGGTATGGGACGCG
TAGCGCAGCAAGGGAGGACGACTCAGGAGCTGTGGCCACAGCAAACAAGA
GCAGCACTTGGGGCTGTATCTGGGTTCCACAACGGCGTACCTTACGTATC
AAGCTAACTGCACTGGAAGATTGGTGCATTGACTATAGTATTGCGGGCAA
GCCTGTATTGTGGATCATTAGCAAATATGCTTGGTACAAGGTGGCTGGAG
GATCCTGGTGGGATAAGGTCCAGTCTGCCCCTCATTATGCCAGCACATTT
ACGCCCACAGAGAGAAAATTTCGTTTGATGAGTTTGGTGATGCGCGCGTT
GACTGCTAACCCTAACCTGACGCTGAGCCAAGTTGCTCGACGTGCAGACG
CTGGTACCTCAGGGGAGCTGACTATCCAAGATTTGGTACAGCATCATTCA
TTTATCTTAGGGCAGTTAGAGGGGTTAGTGCCATTTGTTGTGACAACACA
GGCAGGCGCAACGCAAGAGGTATACCCTCCAGACAGCCAGTTTGCTATTG
GTCTTGCTGAGGCAGGCAACGACTGGGAATCTGCTGGTGCCACTGCCACA
ATAACTCCAGCTGAACTGCTCAGCTTAGTGGAGCAGCGCGAGCAAAGAAA
AGAGCCGAAGAAGGACCAGAAGGCTCCTGTGAAAAGGGAGCATCTTTCAG
CTCTACCACCTGATTCTGAGCTCGTCAAGGAAGTGCGTGCCAAGGCTGAG
TCACAAGCACTAAAAGTCAAGGCTGCGGCTGCG
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