mRNA_C-australica_Contig_10279.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10279.1.1
Unique NamemRNA_C-australica_Contig_10279.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_10279.1.1 vs. uniprot
Match: A0A2E8MZF6_9RICK (DNA ligase n=3 Tax=Bacteria TaxID=2 RepID=A0A2E8MZF6_9RICK)

HSP 1 Score: 444 bits (1143), Expect = 3.090e-150
Identity = 212/276 (76.81%), Postives = 243/276 (88.04%), Query Frame = 1
Query:    1 GGTITKSFDTVYHKYPMLSLGNTYSKEDLSDFDHRVNKGLGTDQYEYFCELKFDGVAISLLYNDGVLKQAVTRGDGEKGDDVTNNVKTIRSIPLRISAKKYPSVFEVRGEVFMPKKAFEALNKSRAEAGDALLANPRNTTSGTLKMQDSSVVASRQLDCYLYSLLGENLEPKTHSEAIELLETLHFNVSQTYKRCKNIDEVFDYINHWEQKRHTLPVETDGIVLKVNNSDQQKELGYTAKNPRWAISYKYKAEGAETRLNDITYQVGRTGAVTPVA 828
            GGTITKSF+TVYHKYPMLSLGNTYSKEDL++FD RV KGLGT  YEY CELKFDGVAISL Y +G+LKQAVTRGDG KGD+VT NVKTI++IPL++  + YP+ FEVRGEVFMPK  F  LN+ R   G+ALLANPRNT SGTLKMQDS VVA R+LDCYLYSLLGE LEP+TH E+++LL+ L FNVS TYK+C+ I+EVFDYIN+WEQKRH LP+ETDGIV+KVN+SDQQKELG+TAK+PRWAISYKYKAE AET+LN ITYQVGRTGA+TPVA
Sbjct:   64 GGTITKSFNTVYHKYPMLSLGNTYSKEDLAEFDKRVEKGLGTTDYEYICELKFDGVAISLTYENGLLKQAVTRGDGVKGDEVTTNVKTIKTIPLKLQGE-YPASFEVRGEVFMPKAVFIHLNEERQRQGEALLANPRNTASGTLKMQDSGVVARRKLDCYLYSLLGEGLEPQTHEESLKLLDQLRFNVSPTYKKCQTIEEVFDYINYWEQKRHELPLETDGIVIKVNSSDQQKELGFTAKSPRWAISYKYKAEAAETKLNGITYQVGRTGAITPVA 338          
BLAST of mRNA_C-australica_Contig_10279.1.1 vs. uniprot
Match: A0A654DV43_9BACT (DNA ligase n=1 Tax=Marinoscillum sp. 108 TaxID=2653151 RepID=A0A654DV43_9BACT)

HSP 1 Score: 437 bits (1123), Expect = 3.210e-147
Identity = 211/276 (76.45%), Postives = 242/276 (87.68%), Query Frame = 1
Query:    1 GGTITKSFDTVYHKYPMLSLGNTYSKEDLSDFDHRVNKGLGTDQYEYFCELKFDGVAISLLYNDGVLKQAVTRGDGEKGDDVTNNVKTIRSIPLRISAKKYPSVFEVRGEVFMPKKAFEALNKSRAEAGDALLANPRNTTSGTLKMQDSSVVASRQLDCYLYSLLGENLEPKTHSEAIELLETLHFNVSQTYKRCKNIDEVFDYINHWEQKRHTLPVETDGIVLKVNNSDQQKELGYTAKNPRWAISYKYKAEGAETRLNDITYQVGRTGAVTPVA 828
            GGTITK+F+TVYHK  MLSLGNTYSK+DL +FD RV KGLGT+ YEYFCELKFDGVAISLLY  GVL QAVTRGDGEKGD+VT+NVKTIR+IPLR++   YP  FEVRGEVFMPKK F+ALN+ RA+ G+ALLANPRNT SGTLKMQDSSVVASR+LDCYLYSLLG+ +   TH E+I LLE ++FNVS TY RCK ++EVF+YIN WEQKRH LPVETDGIV+KVN++  Q+ELG+TAK PRWAISYKYK+E AETRLN+ITYQVGRTGA+TPVA
Sbjct:   64 GGTITKNFNTVYHKSRMLSLGNTYSKDDLIEFDKRVMKGLGTEDYEYFCELKFDGVAISLLYEQGVLSQAVTRGDGEKGDEVTSNVKTIRTIPLRLNGD-YPESFEVRGEVFMPKKVFKALNEERAKNGEALLANPRNTASGTLKMQDSSVVASRKLDCYLYSLLGDAITTSTHEESIHLLERMNFNVSPTYARCKGLEEVFEYINTWEQKRHELPVETDGIVIKVNSTAHQEELGFTAKTPRWAISYKYKSEAAETRLNNITYQVGRTGAITPVA 338          
BLAST of mRNA_C-australica_Contig_10279.1.1 vs. uniprot
Match: A0A3D9L073_MARFU (DNA ligase n=1 Tax=Marinoscillum furvescens DSM 4134 TaxID=1122208 RepID=A0A3D9L073_MARFU)

HSP 1 Score: 419 bits (1077), Expect = 2.680e-140
Identity = 202/276 (73.19%), Postives = 233/276 (84.42%), Query Frame = 1
Query:    1 GGTITKSFDTVYHKYPMLSLGNTYSKEDLSDFDHRVNKGLGTDQYEYFCELKFDGVAISLLYNDGVLKQAVTRGDGEKGDDVTNNVKTIRSIPLRISAKKYPSVFEVRGEVFMPKKAFEALNKSRAEAGDALLANPRNTTSGTLKMQDSSVVASRQLDCYLYSLLGENLEPKTHSEAIELLETLHFNVSQTYKRCKNIDEVFDYINHWEQKRHTLPVETDGIVLKVNNSDQQKELGYTAKNPRWAISYKYKAEGAETRLNDITYQVGRTGAVTPVA 828
            GGTITKSF+TVYHKYPMLSLGNTYSKEDL DFD RV KGLGT  YEY CELKFDGVAIS+LY +G+LKQAVTRGDGEKGD+VTNNV+TIRS+PL    ++ P  FEVRGEVFMPK  F  LN  R +AG+ALLANPRNT SGTLKMQDSSVVA R+LDCYLY+LLGE L  + H  +++LLE   FNVS TY++C  I++V  YINHWEQKRH LPVETDGIV+KVN  + Q+ELG+TAK+PRWAISYKYK+E AE++L +ITYQVGRTGA+TPVA
Sbjct:   64 GGTITKSFNTVYHKYPMLSLGNTYSKEDLVDFDKRVQKGLGTLDYEYICELKFDGVAISILYENGILKQAVTRGDGEKGDEVTNNVRTIRSLPLSFR-QEVPKAFEVRGEVFMPKDVFANLNTEREKAGEALLANPRNTASGTLKMQDSSVVAERKLDCYLYTLLGEGLGNENHDTSLQLLEKWGFNVSPTYQKCATIEDVIAYINHWEQKRHELPVETDGIVIKVNRVEHQQELGFTAKSPRWAISYKYKSEAAESKLLNITYQVGRTGAITPVA 338          
BLAST of mRNA_C-australica_Contig_10279.1.1 vs. uniprot
Match: E4TSK0_MARTH (DNA ligase n=3 Tax=Bacteroidetes TaxID=976 RepID=E4TSK0_MARTH)

HSP 1 Score: 402 bits (1034), Expect = 5.840e-134
Identity = 188/276 (68.12%), Postives = 229/276 (82.97%), Query Frame = 1
Query:    1 GGTITKSFDTVYHKYPMLSLGNTYSKEDLSDFDHRVNKGLGTDQYEYFCELKFDGVAISLLYNDGVLKQAVTRGDGEKGDDVTNNVKTIRSIPLRISAKKYPSVFEVRGEVFMPKKAFEALNKSRAEAGDALLANPRNTTSGTLKMQDSSVVASRQLDCYLYSLLGENLEPKTHSEAIELLETLHFNVSQTYKRCKNIDEVFDYINHWEQKRHTLPVETDGIVLKVNNSDQQKELGYTAKNPRWAISYKYKAEGAETRLNDITYQVGRTGAVTPVA 828
            GG ITK+F+TV HK PMLSLGNTYSKE+L DFD RV +GLG + YEYFCELKFDGVAISL Y +G L + VTRGDG KGDD+TNN KTIR+IPL++  +++P  FE RGEVF+P++AF  +N+ R E G+ALLANPRN  SGTLKMQDS VVA R+LDC+LYS  GE+L   +H E I+ LE   FNVSQTYK+CKNI+EVF++IN WE+KRH+LPV+TDGIV+KVN+  QQ++LG+TAK+PRWAI+YKYKAE + T L +ITYQVGRTGAVTPVA
Sbjct:   65 GGDITKNFETVEHKIPMLSLGNTYSKEELDDFDGRVKRGLGEESYEYFCELKFDGVAISLHYENGKLIRGVTRGDGSKGDDITNNAKTIRTIPLKVRGEQFPEYFEARGEVFLPREAFNEINREREENGEALLANPRNAASGTLKMQDSGVVAKRKLDCFLYSYAGEDLPIDSHEEGIKQLEKFGFNVSQTYKKCKNINEVFNFINEWEEKRHSLPVDTDGIVIKVNSLGQQEQLGFTAKSPRWAIAYKYKAESSTTILKEITYQVGRTGAVTPVA 340          
BLAST of mRNA_C-australica_Contig_10279.1.1 vs. uniprot
Match: UPI001CE25CA4 (NAD-dependent DNA ligase LigA n=1 Tax=Fulvivirga sp. 1062 TaxID=2879465 RepID=UPI001CE25CA4)

HSP 1 Score: 402 bits (1033), Expect = 8.260e-134
Identity = 189/277 (68.23%), Postives = 229/277 (82.67%), Query Frame = 1
Query:    1 GGTITKSFDTVYHKYPMLSLGNTYSKEDLSDFDHRVNKGLGTDQYEYFCELKFDGVAISLLYNDGVLKQAVTRGDGEKGDDVTNNVKTIRSIPLRIS-AKKYPSVFEVRGEVFMPKKAFEALNKSRAEAGDALLANPRNTTSGTLKMQDSSVVASRQLDCYLYSLLGENLEPKTHSEAIELLETLHFNVSQTYKRCKNIDEVFDYINHWEQKRHTLPVETDGIVLKVNNSDQQKELGYTAKNPRWAISYKYKAEGAETRLNDITYQVGRTGAVTPVA 828
            GGT+TKSF TVYHKYPMLSLGNTYS+E+L +FD+RV KGLG + YEYFCELKFDGVA+SL Y +G L + VTRGDG +GDD+T NVKTIR+IPL++   K  P  FE RGE FMP++ F ALNK R + G+ + AN RNTTSGTLKMQDSS+VA R+LDCYLYS++G++L  +TH+E I+LLE L FNVS TY+ CK ++EVFDYI  WE KR +LP+ETDGIV+KVN  DQQ++LG+TAK+PRWAI+YKYKAE A T L DITYQVGRTGA+TPVA
Sbjct:   65 GGTVTKSFKTVYHKYPMLSLGNTYSREELEEFDNRVKKGLGDEPYEYFCELKFDGVALSLTYENGYLSRGVTRGDGTRGDDITANVKTIRTIPLKVKHIKDSPPFFEARGEAFMPRQTFIALNKEREDIGEEVYANARNTTSGTLKMQDSSIVAQRKLDCYLYSIMGDDLPVETHAEGIQLLERLGFNVSPTYRLCKTLEEVFDYIAEWEDKRRSLPLETDGIVVKVNRLDQQEQLGFTAKSPRWAIAYKYKAEDAITTLKDITYQVGRTGAITPVA 341          
BLAST of mRNA_C-australica_Contig_10279.1.1 vs. uniprot
Match: A0A7Y7BFF1_9BACT (DNA ligase (NAD(+)) (Fragment) n=1 Tax=Cytophagia bacterium TaxID=2026730 RepID=A0A7Y7BFF1_9BACT)

HSP 1 Score: 396 bits (1018), Expect = 3.230e-133
Identity = 190/276 (68.84%), Postives = 226/276 (81.88%), Query Frame = 1
Query:    1 GGTITKSFDTVYHKYPMLSLGNTYSKEDLSDFDHRVNKGLGTDQYEYFCELKFDGVAISLLYNDGVLKQAVTRGDGEKGDDVTNNVKTIRSIPLRISAKKYPSVFEVRGEVFMPKKAFEALNKSRAEAGDALLANPRNTTSGTLKMQDSSVVASRQLDCYLYSLLGENLEPKTHSEAIELLETLHFNVSQTYKRCKNIDEVFDYINHWEQKRHTLPVETDGIVLKVNNSDQQKELGYTAKNPRWAISYKYKAEGAETRLNDITYQVGRTGAVTPVA 828
            GGTITK+F+TV HKYPMLSLGNTYSKE+L D+D RVN+GLGTD Y YFCELKFDG A+SL Y +G+LK+AVTRGDG +GDDVT N KTIR+IP+R+     P  FEVRGEV+ PKK FE +N  R + G+  LANPRN  SGTLKMQDSS+VASR+LDCYLY LLG+ LE KTHS+++  LE   FNVS TYK+CKNI+EV +YI +WE KRH LP ETDG+V+KV++ DQQ ELG+TAK+PRWAI+YKYKAE A T L  I+YQVGRTG+VTPVA
Sbjct:   65 GGTITKNFETVVHKYPMLSLGNTYSKEELIDWDGRVNRGLGTDDYAYFCELKFDGTALSLTYENGLLKRAVTRGDGTQGDDVTTNAKTIRTIPMRLK-HDVPESFEVRGEVYFPKKEFERVNAERIDIGEEPLANPRNAGSGTLKMQDSSIVASRKLDCYLYYLLGDTLEFKTHSKSMAQLEQWGFNVSPTYKKCKNIEEVLEYIAYWESKRHDLPSETDGVVIKVDSLDQQNELGFTAKSPRWAIAYKYKAESASTILESISYQVGRTGSVTPVA 339          
BLAST of mRNA_C-australica_Contig_10279.1.1 vs. uniprot
Match: UPI0012BC34E8 (NAD-dependent DNA ligase LigA n=1 Tax=Fulvivirga aurantia TaxID=2529383 RepID=UPI0012BC34E8)

HSP 1 Score: 399 bits (1026), Expect = 5.410e-133
Identity = 191/276 (69.20%), Postives = 221/276 (80.07%), Query Frame = 1
Query:    1 GGTITKSFDTVYHKYPMLSLGNTYSKEDLSDFDHRVNKGLGTDQYEYFCELKFDGVAISLLYNDGVLKQAVTRGDGEKGDDVTNNVKTIRSIPLRISAKKYPSVFEVRGEVFMPKKAFEALNKSRAEAGDALLANPRNTTSGTLKMQDSSVVASRQLDCYLYSLLGENLEPKTHSEAIELLETLHFNVSQTYKRCKNIDEVFDYINHWEQKRHTLPVETDGIVLKVNNSDQQKELGYTAKNPRWAISYKYKAEGAETRLNDITYQVGRTGAVTPVA 828
            GGTITK FDTVYHKYPMLSL NTYSKE+L DFD RV KGLGT  YEYFCELKFDGVA+SL Y +G+L + VTRGDG +GDD+TNNVKTIR+IPLR++    P +FE RGE FMPK  F+ LN+ R    +   AN RNTTSG+LKMQDSS+VA R LDCYLYSL G+NL   THSEAI LLE + FNVS TY++CK I EV  YI  WE KR  LP+ETDGIV+K+N+  QQ+ELG+TAK+PRWAI+YKYKAE A TRL +ITYQVGRTGA+TPVA
Sbjct:   46 GGTITKEFDTVYHKYPMLSLSNTYSKEELEDFDKRVAKGLGTTDYEYFCELKFDGVALSLTYENGLLTRGVTRGDGTRGDDITNNVKTIRTIPLRVNGANVPEIFEARGEAFMPKDVFKNLNEERISNNEEPYANARNTTSGSLKMQDSSIVAKRYLDCYLYSLNGDNLGVDTHSEAIGLLEKMGFNVSPTYRKCKTISEVLTYIAEWETKRLDLPLETDGIVIKINSIAQQQELGFTAKSPRWAIAYKYKAENAATRLENITYQVGRTGAITPVA 321          
BLAST of mRNA_C-australica_Contig_10279.1.1 vs. uniprot
Match: UPI0016754543 (NAD-dependent DNA ligase LigA n=1 Tax=Roseivirga thermotolerans TaxID=1758176 RepID=UPI0016754543)

HSP 1 Score: 400 bits (1028), Expect = 6.570e-133
Identity = 194/276 (70.29%), Postives = 228/276 (82.61%), Query Frame = 1
Query:    1 GGTITKSFDTVYHKYPMLSLGNTYSKEDLSDFDHRVNKGLGTDQYEYFCELKFDGVAISLLYNDGVLKQAVTRGDGEKGDDVTNNVKTIRSIPLRISAKKYPSVFEVRGEVFMPKKAFEALNKSRAEAGDALLANPRNTTSGTLKMQDSSVVASRQLDCYLYSLLGENLEPKTHSEAIELLETLHFNVSQTYKRCKNIDEVFDYINHWEQKRHTLPVETDGIVLKVNNSDQQKELGYTAKNPRWAISYKYKAEGAETRLNDITYQVGRTGAVTPVA 828
            GGTITK+F+TV HKYPMLSLGNTYSKE+L D+D+RV KGLGT++Y YFCELKFDGVA+SL Y  G+LK+AVTRGDG +GDD+T N KTIRSIPLRI  +  P  FEVRGEV+ PK+ F  +N  R +AG+  LANPRN  SGTLKMQDSSVVA R+LDCYLYSLLGE++E  THSE+I LLE   FNVSQTYKRC++I+EV DYI +WE KRH LP ETDG+V+KV++   Q ELG+TAK+PRWAI+YKYKAE A T L  I+YQVGRTGAVTPVA
Sbjct:   65 GGTITKNFETVVHKYPMLSLGNTYSKEELIDWDNRVKKGLGTNEYAYFCELKFDGVALSLTYEKGILKRAVTRGDGTQGDDITANAKTIRSIPLRIGTQT-PDSFEVRGEVYFPKEQFARINAERIDAGEEPLANPRNAASGTLKMQDSSVVAYRKLDCYLYSLLGESVEVNTHSESIALLEKWGFNVSQTYKRCQSIEEVLDYIAYWEIKRHELPSETDGVVIKVDSLHHQNELGFTAKSPRWAIAYKYKAESASTVLESISYQVGRTGAVTPVA 339          
BLAST of mRNA_C-australica_Contig_10279.1.1 vs. uniprot
Match: A0A1W2G6X3_9BACT (DNA ligase n=1 Tax=Reichenbachiella faecimaris TaxID=692418 RepID=A0A1W2G6X3_9BACT)

HSP 1 Score: 398 bits (1023), Expect = 2.500e-132
Identity = 195/276 (70.65%), Postives = 220/276 (79.71%), Query Frame = 1
Query:    1 GGTITKSFDTVYHKYPMLSLGNTYSKEDLSDFDHRVNKGLGTDQYEYFCELKFDGVAISLLYNDGVLKQAVTRGDGEKGDDVTNNVKTIRSIPLRISAKKYPSVFEVRGEVFMPKKAFEALNKSRAEAGDALLANPRNTTSGTLKMQDSSVVASRQLDCYLYSLLGENLEPKTHSEAIELLETLHFNVSQTYKRCKNIDEVFDYINHWEQKRHTLPVETDGIVLKVNNSDQQKELGYTAKNPRWAISYKYKAEGAETRLNDITYQVGRTGAVTPVA 828
            GGTITK+F+TV HKYPMLSLGNTYS EDL DFD RVNKGL  + YEY CELKFDGVA+SL Y +G L +AVTRGDG KGDDVT N KTIRS+PLR++A   P  FEVRGEVFMP   FEALN  +   G+  LANPRNT SGTLKMQDSSVVA+R+LDCYLYSL+ +     TH EA+E L    FNVS TYK+CK IDEV  YI  WE+KRH LPVETDGIV+KVN+  QQ +LG+TAKNPRWAI+YKYKAE A TRLN +TYQVGRTG+VTPVA
Sbjct:   65 GGTITKNFETVTHKYPMLSLGNTYSSEDLKDFDTRVNKGLEGEAYEYVCELKFDGVALSLTYENGALIRAVTRGDGTKGDDVTANAKTIRSVPLRLTASDVPESFEVRGEVFMPNIVFEALNTQKIADGEEPLANPRNTASGTLKMQDSSVVAARKLDCYLYSLMTDRNAVPTHFEAVESLAKWGFNVSPTYKKCKGIDEVLAYIELWEEKRHELPVETDGIVIKVNSLKQQSDLGFTAKNPRWAIAYKYKAESATTRLNGVTYQVGRTGSVTPVA 340          
BLAST of mRNA_C-australica_Contig_10279.1.1 vs. uniprot
Match: UPI001920CA03 (NAD-dependent DNA ligase LigA n=2 Tax=Fulvivirga TaxID=396811 RepID=UPI001920CA03)

HSP 1 Score: 397 bits (1021), Expect = 4.850e-132
Identity = 187/276 (67.75%), Postives = 225/276 (81.52%), Query Frame = 1
Query:    1 GGTITKSFDTVYHKYPMLSLGNTYSKEDLSDFDHRVNKGLGTDQYEYFCELKFDGVAISLLYNDGVLKQAVTRGDGEKGDDVTNNVKTIRSIPLRISAKKYPSVFEVRGEVFMPKKAFEALNKSRAEAGDALLANPRNTTSGTLKMQDSSVVASRQLDCYLYSLLGENLEPKTHSEAIELLETLHFNVSQTYKRCKNIDEVFDYINHWEQKRHTLPVETDGIVLKVNNSDQQKELGYTAKNPRWAISYKYKAEGAETRLNDITYQVGRTGAVTPVA 828
            GGTITK F+TV+HK PMLSLGNTYSKEDL DFD RV+KGL  + YEY CELKFDG+A+S+ Y +GVL + VTRGDG KGDD+T+NVKTIRS+PLR+    YP+ FE RGE FMPKK FE LNK +   G+   AN RNT SG+LKMQDS+ VA R+LDCYLY+L G+NL   +H EAI+ LE++ FNVS TYK+C +IDEVF YIN WE KRH LP+ETDGIV+KVN+ +QQ++LG+T+K+PRWAI+YKYKAE A TRL  ITYQVGRTGA+TPVA
Sbjct:   65 GGTITKEFNTVFHKTPMLSLGNTYSKEDLEDFDRRVSKGLEGESYEYICELKFDGIALSVTYENGVLTRGVTRGDGAKGDDITHNVKTIRSMPLRLKGD-YPAEFEARGEAFMPKKVFEELNKEKESVGEEPYANARNTASGSLKMQDSAAVAKRKLDCYLYALNGDNLNINSHEEAIQKLESMGFNVSPTYKKCTDIDEVFQYINEWETKRHELPLETDGIVIKVNSFEQQQQLGFTSKSPRWAIAYKYKAENAATRLKSITYQVGRTGAITPVA 339          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10279.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8MZF6_9RICK3.090e-15076.81DNA ligase n=3 Tax=Bacteria TaxID=2 RepID=A0A2E8MZ... [more]
A0A654DV43_9BACT3.210e-14776.45DNA ligase n=1 Tax=Marinoscillum sp. 108 TaxID=265... [more]
A0A3D9L073_MARFU2.680e-14073.19DNA ligase n=1 Tax=Marinoscillum furvescens DSM 41... [more]
E4TSK0_MARTH5.840e-13468.12DNA ligase n=3 Tax=Bacteroidetes TaxID=976 RepID=E... [more]
UPI001CE25CA48.260e-13468.23NAD-dependent DNA ligase LigA n=1 Tax=Fulvivirga s... [more]
A0A7Y7BFF1_9BACT3.230e-13368.84DNA ligase (NAD(+)) (Fragment) n=1 Tax=Cytophagia ... [more]
UPI0012BC34E85.410e-13369.20NAD-dependent DNA ligase LigA n=1 Tax=Fulvivirga a... [more]
UPI00167545436.570e-13370.29NAD-dependent DNA ligase LigA n=1 Tax=Roseivirga t... [more]
A0A1W2G6X3_9BACT2.500e-13270.65DNA ligase n=1 Tax=Reichenbachiella faecimaris Tax... [more]
UPI001920CA034.850e-13267.75NAD-dependent DNA ligase LigA n=2 Tax=Fulvivirga T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10279contigC-australica_Contig_10279:1..828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1120968.AUBX01000010_gene998
Preferred nameligA
PFAMsBRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5
Model size828
Max annot lvl976|Bacteroidetes
KEGG rclassRC00005
KEGG koko:K01972
KEGG ReactionR00382
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003909,GO:0003911,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051103,GO:0051716,GO:0071704,GO:0090304,GO:0140097,GO:1901360
Exons1
Evalue3.2e-134
EggNOG OGsCOG0272@1|root,COG0272@2|Bacteria,4NE2X@976|Bacteroidetes,47KR4@768503|Cytophagia
EC6.5.1.2
DescriptionDNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
Cds size828
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586763.965433-CDS-C-australica_Contig_10279:0..8281682586763.965433-CDS-C-australica_Contig_10279:0..828Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10279 1..828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10279.1.1prot_C-australica_Contig_10279.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10279 1..828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10279.1.1

>prot_C-australica_Contig_10279.1.1 ID=prot_C-australica_Contig_10279.1.1|Name=mRNA_C-australica_Contig_10279.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=276bp
GGTITKSFDTVYHKYPMLSLGNTYSKEDLSDFDHRVNKGLGTDQYEYFCE
LKFDGVAISLLYNDGVLKQAVTRGDGEKGDDVTNNVKTIRSIPLRISAKK
YPSVFEVRGEVFMPKKAFEALNKSRAEAGDALLANPRNTTSGTLKMQDSS
VVASRQLDCYLYSLLGENLEPKTHSEAIELLETLHFNVSQTYKRCKNIDE
VFDYINHWEQKRHTLPVETDGIVLKVNNSDQQKELGYTAKNPRWAISYKY
KAEGAETRLNDITYQVGRTGAVTPVA
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mRNA from alignment at C-australica_Contig_10279:1..828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10279.1.1 ID=mRNA_C-australica_Contig_10279.1.1|Name=mRNA_C-australica_Contig_10279.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=828bp|location=Sequence derived from alignment at C-australica_Contig_10279:1..828- (Chrysoparadoxa australica CS_1217)
GGTGGAACAATCACCAAATCCTTTGATACAGTATATCATAAATATCCAAT GCTTTCATTGGGCAATACCTATTCTAAAGAAGATTTATCAGATTTTGATC ACCGGGTAAACAAAGGACTTGGAACGGATCAATATGAATATTTCTGTGAA TTAAAATTTGATGGTGTGGCCATCAGTTTGCTTTATAATGATGGGGTTTT AAAACAAGCGGTCACACGTGGAGATGGAGAAAAAGGTGATGACGTTACCA ATAATGTAAAAACCATCAGGTCGATCCCTTTACGCATATCGGCAAAAAAA TATCCTTCAGTTTTTGAAGTGAGAGGTGAAGTCTTTATGCCTAAAAAGGC TTTCGAAGCACTTAATAAATCAAGGGCAGAAGCTGGTGATGCTTTATTGG CCAACCCCAGAAACACTACCAGCGGCACACTTAAAATGCAGGATTCTTCG GTAGTAGCCAGTAGACAACTGGATTGCTATTTGTATTCTCTTCTTGGAGA AAACCTGGAACCTAAAACACATTCTGAAGCCATTGAACTACTTGAAACGC TTCACTTCAACGTCTCCCAGACATATAAACGGTGCAAAAACATAGATGAA GTATTTGATTATATTAATCATTGGGAACAAAAAAGACACACTCTACCGGT TGAAACAGATGGAATTGTACTTAAGGTCAATAATTCTGATCAACAAAAAG AGCTTGGTTATACAGCCAAAAACCCACGATGGGCTATCTCATATAAATAT AAGGCTGAAGGTGCTGAGACCAGACTTAATGATATTACCTATCAGGTGGG CCGAACAGGTGCTGTTACACCAGTCGCT
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Coding sequence (CDS) from alignment at C-australica_Contig_10279:1..828-

>mRNA_C-australica_Contig_10279.1.1 ID=mRNA_C-australica_Contig_10279.1.1|Name=mRNA_C-australica_Contig_10279.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=828bp|location=Sequence derived from alignment at C-australica_Contig_10279:1..828- (Chrysoparadoxa australica CS_1217)
GGTGGAACAATCACCAAATCCTTTGATACAGTATATCATAAATATCCAAT
GCTTTCATTGGGCAATACCTATTCTAAAGAAGATTTATCAGATTTTGATC
ACCGGGTAAACAAAGGACTTGGAACGGATCAATATGAATATTTCTGTGAA
TTAAAATTTGATGGTGTGGCCATCAGTTTGCTTTATAATGATGGGGTTTT
AAAACAAGCGGTCACACGTGGAGATGGAGAAAAAGGTGATGACGTTACCA
ATAATGTAAAAACCATCAGGTCGATCCCTTTACGCATATCGGCAAAAAAA
TATCCTTCAGTTTTTGAAGTGAGAGGTGAAGTCTTTATGCCTAAAAAGGC
TTTCGAAGCACTTAATAAATCAAGGGCAGAAGCTGGTGATGCTTTATTGG
CCAACCCCAGAAACACTACCAGCGGCACACTTAAAATGCAGGATTCTTCG
GTAGTAGCCAGTAGACAACTGGATTGCTATTTGTATTCTCTTCTTGGAGA
AAACCTGGAACCTAAAACACATTCTGAAGCCATTGAACTACTTGAAACGC
TTCACTTCAACGTCTCCCAGACATATAAACGGTGCAAAAACATAGATGAA
GTATTTGATTATATTAATCATTGGGAACAAAAAAGACACACTCTACCGGT
TGAAACAGATGGAATTGTACTTAAGGTCAATAATTCTGATCAACAAAAAG
AGCTTGGTTATACAGCCAAAAACCCACGATGGGCTATCTCATATAAATAT
AAGGCTGAAGGTGCTGAGACCAGACTTAATGATATTACCTATCAGGTGGG
CCGAACAGGTGCTGTTACACCAGTCGCT
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