mRNA_C-australica_Contig_1024.7.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1024.7.1
Unique NamemRNA_C-australica_Contig_1024.7.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_1024.7.1 vs. uniprot
Match: D7FR40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR40_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.240e-13
Identity = 49/106 (46.23%), Postives = 71/106 (66.98%), Query Frame = 1 
Query:  331 VPPDASKYQTESQRRRSLPLSQLKRRKKKKNEREDLSGQGELRPMVAKTDRRSRLQGEDYWIDNEELEKSRA-RESEREAAAQRRSTLQEGQFTREKLREEIISPW 645
             PP     QTE+QRRR+LPLS+LKR K KK   ++   +GE+RP+V KTDR S L+GEDYWID  E+++ +A RE++ +A A         QF + K++ EI++P+
Sbjct:  149 APPGLESLQTENQRRRALPLSKLKRVKPKKRAAKE-EEEGEIRPLVLKTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAP-------DQFAQSKMKAEIVNPY 246
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BLAST of mRNA_C-australica_Contig_1024.7.1 vs. uniprot
Match: A0A835YJZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.350e-13
Identity = 53/115 (46.09%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:  316 ANELNVPPDASKYQTESQRRRSLPLSQLKRRKKKKNEREDLSGQGELRPMVAKT-DRRSRLQGEDYWID----NEELEKSRARESEREAAAQRRSTLQEGQFTREKLREEIISPW 645
            +N+ + PPD S +Q++SQ+RR+ PLSQLKR++K K  +E    +GELRP+V K  +  S LQGEDYWID    NE+ +K              + T  E QF  EKLREEI+SP+
Sbjct:   47 SNQPDQPPDVSDFQSDSQKRRNRPLSQLKRQRKVKQVQEP---EGELRPLVKKERNSMSVLQGEDYWIDLSLVNEDNDKPV------------KPTPTEDQFKDEKLREEIVSPY 146
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1024.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR40_ECTSI1.240e-1346.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YJZ1_9STRA7.350e-1346.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1024contigC-australica_Contig_1024:12225..13439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FR40
Model size1017
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue3.64e-15
EggNOG OGs2D131@1|root,2SGIC@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003600.1
Cds size504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586761.5052567-UTR-C-australica_Contig_1024:12224..125931682586761.5052567-UTR-C-australica_Contig_1024:12224..12593Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1024 12225..12593 -
1682586761.5383565-UTR-C-australica_Contig_1024:13295..134391682586761.5383565-UTR-C-australica_Contig_1024:13295..13439Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1024 13296..13439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586761.5144048-CDS-C-australica_Contig_1024:12593..126471682586761.5144048-CDS-C-australica_Contig_1024:12593..12647Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 12594..12647 -
1682586761.5223815-CDS-C-australica_Contig_1024:12740..129081682586761.5223815-CDS-C-australica_Contig_1024:12740..12908Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 12741..12908 -
1682586761.5302918-CDS-C-australica_Contig_1024:13013..132951682586761.5302918-CDS-C-australica_Contig_1024:13013..13295Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 13014..13295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1024.7.1prot_C-australica_Contig_1024.7.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1024 12594..13295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1024.7.1

>prot_C-australica_Contig_1024.7.1 ID=prot_C-australica_Contig_1024.7.1|Name=mRNA_C-australica_Contig_1024.7.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=168bp
MMIHLFLCLLLTASCSGFLRTAPLPLAGSWHTLSKGHTPPLFMSEEPFSA
QRRQEAKANELNVPPDASKYQTESQRRRSLPLSQLKRRKKKKNEREDLSG
QGELRPMVAKTDRRSRLQGEDYWIDNEELEKSRARESEREAAAQRRSTLQ
EGQFTREKLREEIISPW*
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mRNA from alignment at C-australica_Contig_1024:12225..13439-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1024.7.1 ID=mRNA_C-australica_Contig_1024.7.1|Name=mRNA_C-australica_Contig_1024.7.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1215bp|location=Sequence derived from alignment at C-australica_Contig_1024:12225..13439- (Chrysoparadoxa australica CS_1217)
GCGAATTCCTGAGATGCTGGGGGTTTGGGGAGGCCCTTGGCCCTAGGGGG
GGTGTGAATGTGTGAAATGTCAAGTGAGCCGAGTGAGAATGCCCCACGTG
AGAACTAAGTACAGCATACTAGTACGTAGTGTCCTTAGTCCTTAATGATG
ATTCACCTGTTTCTTTGCCTGCTGCTGACGGCATCCTGCAGTGGTTTCCT
TCGCACTGCCCCGCTTCCCCTGGCTGGGTCATGGCATACGCTGAGTAAGG
GACATACGCCCCCCCTCTTTATGAGCGAGGAACCTTTCAGTGCGCAGCGA
CGGCAGGAGGCGAAGGCCAACGAGCTGAATGTTCCGCCAGATGCCAGCAA
GTACCAGACTGAAAGCCAGAGAAGAAGAAGCCTGCCATTGAGCCAGCTGA
AGCGAAGGAAGAAGAAGAAGAACGAGGTACTTAACCTCTCCCTAGTGTCT
TGCCTTTCCCGTCCTTACAAATGAGGAGCACATCATGACGTGCATCACTC
ACTGCACACTTTCTATTCTTTCTTTTCTCAGAGAGAGGATCTGTCGGGTC
AGGGCGAACTGCGGCCGATGGTAGCTAAGACTGACCGCAGAAGTAGGTTG
CAGGGAGAGGATTATTGGATTGATAATGAAGAACTGGAAAAATCAAGGGC
TCGGGAATCTGAGCGGGAGGCAGCAGCTCAGCGGAGAAGCACTCTGCAGG
TTGGTTGGTTGGTGTTGGTGAAGGTAGGGTAGGAAGGAGTTTGAAGTGCT
TTTACTTTGAGGTTGACCTCAGCTTCTATATTGCTTACTCAGGAGGGTCA
GTTCACGCGGGAGAAACTGAGGGAAGAGATTATCAGCCCATGGTAGGCTT
AGGCTGACATTGATACTGACACTGAGACAGAGACTGACACTGAGTGGCTC
ATACCTACTAGCTTTTATCTGCCTATCAGCTGCTTCTTAACTACTTGCAA
GGCCCTTGATTTGGGAGAGATTTGATAAGATAATTCGCTGGCTGTGCCAT
CTTCCTCACTCAACTCAATGCATATGGTTGAATGGTTCTGCTCTCCTGCA
CTAACAAGTACTGTTTGTTGGAGGAAACTTATCAGTATCAGTATTTAAGT
CACATCAACCGCCTGACGCGCTTTTCAATGCTCCTCTTGCCAATTCCAAC
AGGAAGCAAAACTGGATCCTCATATTTATTTTTGTTATTGGGAGCATTAT
AGGGTTTGTCTCACT
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Coding sequence (CDS) from alignment at C-australica_Contig_1024:12225..13439-

>mRNA_C-australica_Contig_1024.7.1 ID=mRNA_C-australica_Contig_1024.7.1|Name=mRNA_C-australica_Contig_1024.7.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=504bp|location=Sequence derived from alignment at C-australica_Contig_1024:12225..13439- (Chrysoparadoxa australica CS_1217)
ATGATGATTCACCTGTTTCTTTGCCTGCTGCTGACGGCATCCTGCAGTGG
TTTCCTTCGCACTGCCCCGCTTCCCCTGGCTGGGTCATGGCATACGCTGA
GTAAGGGACATACGCCCCCCCTCTTTATGAGCGAGGAACCTTTCAGTGCG
CAGCGACGGCAGGAGGCGAAGGCCAACGAGCTGAATGTTCCGCCAGATGC
CAGCAAGTACCAGACTGAAAGCCAGAGAAGAAGAAGCCTGCCATTGAGCC
AGCTGAAGCGAAGGAAGAAGAAGAAGAACGAGAGAGAGGATCTGTCGGGT
CAGGGCGAACTGCGGCCGATGGTAGCTAAGACTGACCGCAGAAGTAGGTT
GCAGGGAGAGGATTATTGGATTGATAATGAAGAACTGGAAAAATCAAGGG
CTCGGGAATCTGAGCGGGAGGCAGCAGCTCAGCGGAGAAGCACTCTGCAG
GAGGGTCAGTTCACGCGGGAGAAACTGAGGGAAGAGATTATCAGCCCATG
GTAG
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