mRNA_C-australica_Contig_1024.6.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_1024.6.1
Unique NamemRNA_C-australica_Contig_1024.6.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A835YWF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWF1_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.070e-44
Identity = 91/282 (32.27%), Postives = 158/282 (56.03%), Query Frame = 2
Query:  149 LKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLHALLDSYTQKSGERIGACEEGLGQLTEEVNELGSIAVGRLEALEAEAKTLATKEETDQK----ADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVD--SHPGARTPFSGRVKFTP 976
            L+ W+M R  G+++  + ++L   LA     +A K++RS+V +V+  + +V +V  F+D++  RV ALEG + RA  +    A S D   +  + ++  L  + +  +  +++R++ +L   + ++ ++ GE   +       L   + E G  A  + E L +E +  A  +E D K    AD+ +CDG+W ELR E+ CKAW  + + + E +  L  D A TAK+A LA+RFV+WF  RG AY+HNL+A+E+++  +     S    R P+SG ++FTP
Sbjct:   90 LQLWAMDRQAGEDLWASCRSLQQTLAAQQAALATKLERSEVQHVQHLVGRVAAVAGFMDDSKARVTALEGAVQRAHEQHRLLADSADATKQRVEALHNSLSTRASDHSVAQLERQLENLRDAVAAHERRCGELHASAAATRATLEARLREAGDAA--QRERLASENRREAMADEVDAKLATKADVAICDGMWSELRAEIDCKAWGHEHRGLAERVDGLSSDQAATAKQAALAVRFVNWFSTRGEAYDHNLNAVEKQLHGMATSALSSINQRQPYSGTLRFTP 369          
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A7S2RP99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RP99_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.920e-24
Identity = 77/282 (27.30%), Postives = 134/282 (47.52%), Query Frame = 2
Query:  149 LKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTL-VETAKKINR--ELEDKTNISNCLKVQREVTDLHALLDSYTQKSG----ERIGACEEGLGQLTEEVNELGSIAVGRLEALEAEAKTLATKEETDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPFSGRVKFT 973
            L++   S+D GD +   Q  L +Q+  V +++  K D+  +  +EA   K+ +    +D+T+  +D L      AE +L  H  +L  L  + ++  N    L  KT++S   + +RE+ +L A    ++  +     + I  C   L  L        S A     AL     TLAT E  + KAD +        +  +L  KA      ++ + +  L++  A+ AK+  L++RF+DWF +RG AYEHNL A++  +  +   S P  R P+SG+ + +
Sbjct:    9 LRRDCASQDFGDGLEAGQLHLQEQMNTVQQMMLGKADKVQLTGMEATCTKLRNYSAHMDDTNDLLDRLGQASASAEEQLTAHERNLAALRSQLSQHANTMASLATKTSLSEESRHRRELEELVAAQCEHSANAEGTMVKEIEECRRHLETLRXXXQRHSSHAESEFNALHTTLDTLATAERMELKADKLQVADALARIHAQLDRKAGVQPFASLADTVDQLQEHQAKHAKQIDLSVRFIDWFSDRGQAYEHNLRALDEHLGKIGKASAPQDRQPYSGQTRLS 290          
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: D7FQX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX2_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.100e-16
Identity = 44/122 (36.07%), Postives = 78/122 (63.93%), Query Frame = 2
Query:   11 TVGDVACANKDAISHLANELRKKASSEEVAQCQGDLDTAMAEKVKDLKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAE 376
            TVG+   AN  A+  L+ +L +KA  ++++    +L+  + E+ + +++W + RD  D++ RA + L  +L  V  +++ KIDRS++ N++AA AKV++V +FLD+  RRV  LE G+ R E
Sbjct:   86 TVGEAVRANGQALLGLSKQLEEKAGRDDLSAKGEELEACIRERERAVRQWGVGRDFADSLGRANRGLAGKLLAVEGVLSTKIDRSELDNMQAACAKVSTVSDFLDDAARRVSTLEAGLERGE 207          
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A485KW49_9STRA (Aste57867_11888 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW49_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.190e-15
Identity = 79/327 (24.16%), Postives = 153/327 (46.79%), Query Frame = 2
Query:   11 TVGDVACANKDAISHLANELRKKASSEEVAQCQGDLDTAMAEKVKDLKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLH--------ALLDSYTQKSGERIGACEEGLGQLTEEVNELGSIAVGRLEALEAEAKTLATKEET-DQKADLVLCDGLWGE----LRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPF 952
            ++G +  AN   I  L  ++R K     V      +++ +++++  L+K +++ ++  +  + Q AL  QLA ++  V  K+D+ D+   EAA  K       LD    R  A+E  + +   +L       D  V++ ++++     +T + + L+    VT           A +D+  QK    I AC E L   T+      ++   R++A+   A+T+A   +T + +    L    W +    +  +L+ KA ++DV      L  + + +   A +  +++RF+DWF +RG AYEHNL  +E ++++L +      R PF
Sbjct:   91 SLGSIVAANYKEIVSLREKVRDKVDPATVVDACRRVESTLSDELCALRKDTVNLELLSSWHKDQDALHAQLAALTVQVNSKLDKIDLTRTEAAACK-------LDAFIPRCAAVESSLTQLHSRLD------DLTVQSQREMHDASIQRTLMRHALEELHIVTATSRADWTSAVARVDALVQKCRRHIDACHETLQAHTKRCVAHRAVDCARVDAI---AQTMADHTKTFNLQLQTKLAQAEWTKGMNAVHAQLATKADRADVAATNAHLRRVDEANTHCASQIDVSVRFIDWFFQRGDAYEHNLQLMEAQLKALAMRPPRRRREPF 401          
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: W4FEK1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FEK1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.730e-14
Identity = 80/324 (24.69%), Postives = 149/324 (45.99%), Query Frame = 2
Query:   11 TVGDVACANKDAISHLANELRKKASSEEVAQCQGDLDTAMAEKVKDLKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLHALLDSYTQKSGERIGACEEGLGQLTEEVNELGS---IAVGRL-EALEAEAKTLATKEETDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPFSGRVKF 970
            ++G +  AN   I  +  +L +K   + V +    ++T M    + L+K  ++ ++  ++   Q AL  ++A +   +  K+D+ +V  VEA  +K+ +      E +R +  L+  +  A      H   L  L ETA+  +R  + + +++    ++ + T  H  +D+  QK    I  C   +       +E  +    +V  L +ALEA A+ +  + E   K +         EL   L  KA    V ++++ +    D   R      L++RF++WF ERG AYE NL  +E +++ L++      R PF GRV+F
Sbjct:   84 SLGSIVAANYKEIVSMREKLHRKVEPDVVEEACRRVETNMFSAFESLRKECVNLELLSSLHMDQDALHAKMAALEGQIDSKMDKMEVTRVEAMASKLHAFIPRCSEIERSLQQLDEKLT-ASSATCRHHEQLAAL-ETAQLGHRLADHRADLTT---LRTDTTAAHDAMDAVIQKCQRNIHLCLSKVQVAQRSHSEFAASTRTSVHELADALEAHAQRI--QNELGLKVNSCDWQTRANELEAALETKAPLQAVTSLKKDVDKWADWAGRCDSHVQLSVRFIEWFFERGEAYEANLQLMEAQLKHLSL--RQVTRQPFDGRVRF 398          
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A024TV69_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TV69_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.590e-11
Identity = 67/322 (20.81%), Postives = 134/322 (41.61%), Query Frame = 2
Query:   11 TVGDVACANKDAISHLANELRKKASSEEVAQCQGDLDTAMAEKVKDLKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLHALLDSYTQKSGERIGACEEGLGQLTEEVNELGSIAVGRLEALE--AEAKTLATKEETDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPFSGRVKF 970
            T+G +  AN   I  +  +L++K  +  V      ++T ++  +  L+K  ++ ++   +   Q  L  +LA V   +  K+D+++   ++A    + +      E +  +  L   +  +  K   H   + T  ETA       +   ++     ++ E T   A +++  Q   E I  C   L  + +   +  +     L  L    E    + ++E D K      D    E+   +  K   +     +  +  L +   R      L++RF+DW+  RG AYEHN+  +E +++ L++     +R PF GRV+F
Sbjct:   89 TLGSIVAANYKEIVSMREKLQRKIDAAVVEDACRRVETKLSSALDTLRKDCVTLELISRLHMDQDELHTKLATVEAQIDSKMDKTEATRMDAVATTMHAFIPRCSEIEHSLQQLHEKLAASNAKCRQHDQHVST--ETAHLRQLVSQQHRDVGA---LRAETTAGQATIEAAVQACKENISLCHNKLQTIRQAHADFAASTRSSLRQLTQTGERNFQSLRDELDGKVSRTDWDAQRREMEALVQTKTPLAVTAATKAVVDKLDEWVTRCDAHVQLSLRFIDWYFNRGDAYEHNMQVMEAQLKQLSL--RHVSREPFDGRVRF 403          
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A7S2BBK8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BBK8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.050e-10
Identity = 38/141 (26.95%), Postives = 69/141 (48.94%), Query Frame = 2
Query:  548 IGACEEGLGQLTEEVNELGSIAVGRLEALEAEAKTLATKEETDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPFSGRVKF 970
            +  C  GL ++  E++E  +    R + +       A  ++ D K +         +L  +L  KA    ++ +Q  +  L    A   ++ GL++RF+DWF ERG AYEHN++A++  +  L   S P  R P++ + +F
Sbjct:   47 LSECRSGLERINTEISEFEAGTKERFDQMAHMLDQCAVTKQVDLKVNKAEMKVALEDLCRQLEKKAGVDSMEKLQGHVHGLETTSADHTQKIGLSLRFIDWFSERGDAYEHNMNALDGHLGGLAKLSLPQHRQPYTSQTRF 187          
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A8J2SUQ0_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUQ0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.570e-10
Identity = 67/280 (23.93%), Postives = 118/280 (42.14%), Query Frame = 2
Query:  206 ALGDQLALVSELVARKIDRSDVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLHALLDSYTQKSGERIGACEEGLGQLTEEVNELGSIA-----VGRLEALEAEAKT--------LATKEE--TDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEA-----------LSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPFSGRVK 967
            A G +L     +VA K+D  D     A   ++  V  F+D T+  V ALE   ++A  + +               I+ +LE  + ++  L  QREV  + A++     K  ER  A +E L   T        +A     + +L+ L+ E +         LA +E   + Q            E    L+ +     V+++  A           ++ L +  A+   E  +A++FVDWF  RG  YEHN++A++R+++ +   +   +  PFS  V+
Sbjct:  170 AFGRRLDATDAVVATKVDGVDEAAFRATCIRLRDVDSFIDRTNATVKALEERASKASDERSH--------------IHEQLEASSVVTAAL--QREVDAIVAVVGEEAVKREERDQALDEALANTTHRDAHAQHVAHHASTLEQLQQLKREVEQGFARVSADLAAEESRASSQSXXXXXXXXXXXEAAAALARRLVDGAVRDLLAAPHGAVAECRGRVARLEETSAKARAELDIALKFVDWFSNRGEGYEHNMTALDRRLDGMVRSAREASAEPFSPSVR 433          
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A7S2NW91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NW91_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.260e-8
Identity = 51/228 (22.37%), Postives = 109/228 (47.81%), Query Frame = 2
Query:  248 RKIDRSDVG---NVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLA----THATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLHALLDSYTQKSGERIGACEEGLGQLTEEVNELGSIAVGRLEALEAEAKTLATKEETDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIE 910
            +KID  +     N + A   + S  +F+   +  +  L+  + +  GKLA    ++ ++ D ++ T K+I++         + + ++  +  L  + +  T K  E        L ++ +E+ ++   A  + + +++      TK+E ++    +L       LR  LS  A +  +  +   ++ L DD+  T ++A L+  FV+W+G+RG AYEHNL A++  ++
Sbjct:   59 KKIDNFEAEVEFNTDQAEDTLRSHAKFVKSANVAITQLQSSVEKITGKLAGLVESNQSTHDNILNTMKEIDKR-------QDLVVLKERIRSLSLVAEDMTAK--EEFLTVANRLKEVNDEMQQMALQARNQAKTIKSFQVKAFTKDEANRLNGAILS------LRGGLSKTAKQKTLDELTATVNNLTDDYVATRRKAQLSAEFVEWYGKRGDAYEHNLIAVDGHLK 271          
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Match: A0A397AZC5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AZC5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.410e-6
Identity = 59/235 (25.11%), Postives = 100/235 (42.55%), Query Frame = 2
Query:  266 DVGNVEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTLVETAKKINRELEDKTNISNCLKVQREVTDLHALLDSYTQKSGERIGACEEGLGQLTEEVNELGSIAVGRLEALEAEAKTLATKEETDQKADLVLCDGLWGELRHELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYEHNLSAIERKIESLTVDSHPGARTPFSGRVKF 970
            +V  VEA   K+ +      E +R +  L+  +  A      H   L  L ETA+  +R  + + +++    ++ + T  H  +D+  QK    I  C             L  + V +    E  A T A+  E        L D L    +  +  +A    V ++++ +    D   R      L++RF++WF ERG AYE NL  +E +++ L++      R PF GRV+F
Sbjct:    2 EVTRVEAMATKLHAFIPRCSEIERSLQQLDEKLT-ASSATCRHHEQLAAL-ETAQLGHRLADHRADLTT---LRTDTTAAHDAMDAVIQKCQRNIHLC-------------LSKVQVAQRSHSEFAASTRASVHE--------LADALEAHAQR-IQNEAPLQAVTSLKKDVDKWADWAGRCDSHVQLSVRFIEWFFERGEAYEANLQLMEAQLKHLSL--RQVTRQPFDGRVRF 207          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_1024.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A835YWF1_9STRA1.070e-4432.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RP99_9STRA1.920e-2427.30Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D7FQX2_ECTSI2.100e-1636.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A485KW49_9STRA2.190e-1524.16Aste57867_11888 protein n=1 Tax=Aphanomyces stella... [more]
W4FEK1_9STRA1.730e-1424.69Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024TV69_9STRA7.590e-1120.81Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S2BBK8_9STRA3.050e-1026.95Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J2SUQ0_9STRA6.570e-1023.93Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2NW91_9STRA2.260e-822.37Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A397AZC5_9STRA1.410e-625.11Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_1024contigC-australica_Contig_1024:8582..10326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000023195
Model size1023
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons8
Evalue1.86e-12
EggNOG OGs2E3I5@1|root,2SAK6@2759|Eukaryota,1MG4D@121069|Pythiales
DescriptionSource PGD
Cds size852
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_1024.6.1prot_C-australica_Contig_1024.6.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_1024 8709..10282 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586761.3740067-UTR-C-australica_Contig_1024:8581..87081682586761.3740067-UTR-C-australica_Contig_1024:8581..8708Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1024 8582..8708 +
1682586761.4752173-UTR-C-australica_Contig_1024:10282..103261682586761.4752173-UTR-C-australica_Contig_1024:10282..10326Chrysoparadoxa australica CS_1217UTRC-australica_Contig_1024 10283..10326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586761.389775-CDS-C-australica_Contig_1024:8708..87201682586761.389775-CDS-C-australica_Contig_1024:8708..8720Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 8709..8720 +
1682586761.4014401-CDS-C-australica_Contig_1024:8816..89131682586761.4014401-CDS-C-australica_Contig_1024:8816..8913Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 8817..8913 +
1682586761.4134052-CDS-C-australica_Contig_1024:9047..90721682586761.4134052-CDS-C-australica_Contig_1024:9047..9072Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 9048..9072 +
1682586761.4240768-CDS-C-australica_Contig_1024:9198..93131682586761.4240768-CDS-C-australica_Contig_1024:9198..9313Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 9199..9313 +
1682586761.4345338-CDS-C-australica_Contig_1024:9386..94611682586761.4345338-CDS-C-australica_Contig_1024:9386..9461Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 9387..9461 +
1682586761.4443614-CDS-C-australica_Contig_1024:9581..97161682586761.4443614-CDS-C-australica_Contig_1024:9581..9716Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 9582..9716 +
1682586761.4543056-CDS-C-australica_Contig_1024:9811..99171682586761.4543056-CDS-C-australica_Contig_1024:9811..9917Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 9812..9917 +
1682586761.4650211-CDS-C-australica_Contig_1024:9995..102821682586761.4650211-CDS-C-australica_Contig_1024:9995..10282Chrysoparadoxa australica CS_1217CDSC-australica_Contig_1024 9996..10282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_1024.6.1

>prot_C-australica_Contig_1024.6.1 ID=prot_C-australica_Contig_1024.6.1|Name=mRNA_C-australica_Contig_1024.6.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=284bp
MAEKVKDLKKWSMSRDVGDNIARAQQALGDQLALVSELVARKIDRSDVGN
VEAALAKVTSVCEFLDETDRRVDALEGGMNRAEGKLATHATSLDTLVETA
KKINRELEDKTNISNCLKVQREVTDLHALLDSYTQKSGERIGACEEGLGQ
LTEEVNELGSIAVGRLEALEAEAKTLATKEETDQKADLVLCDGLWGELRH
ELSCKAWKSDVKNVQEALSLLRDDHARTAKEAGLAIRFVDWFGERGGAYE
HNLSAIERKIESLTVDSHPGARTPFSGRVKFTP*
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mRNA from alignment at C-australica_Contig_1024:8582..10326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_1024.6.1 ID=mRNA_C-australica_Contig_1024.6.1|Name=mRNA_C-australica_Contig_1024.6.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1745bp|location=Sequence derived from alignment at C-australica_Contig_1024:8582..10326+ (Chrysoparadoxa australica CS_1217)
AGGGGGCGGAACTGTAGGTGACGTTGCTTGTGCAAACAAGGATGCAATAT CTCACCTAGCAAACGAGCTGAGAAAGAAAGCGAGTAGCGAGGAAGTGGCG CAGTGCCAAGGGGATTTGGACACGGCAATGGCAGAGAAGGTCAGTCAGTG CTGATCGAGATTTGTTGTGCAGGATAGCTCAGTGAGTATTGAAGATCCCT CCACCTCATTATGATCCCAACATAACACGTAACAGGTGAAGGACTTGAAA AAGTGGAGCATGAGCAGGGATGTAGGGGACAACATTGCCAGAGCACAGCA AGCCCTAGGAGATCAGCTCGCTTTAGTTTCAGGTTAGTTAAGTGGTAGCT TTAGTATCATCCGTGACCTAAATTAACTTGCATTGATTGATTATTGGAAC ACTAAGTAGCAACTGATGCATTTGTTCACTCACGAGCAATTCACTCAATT CATGCTCTCATTCCAGAGTTGGTAGCAAGAAAGATAGACAGGTGAGAGCA GAGTGCCTTTAGGATCAGCAGGTTGAAAGTTGGGTGAGAGGTTTTGGGTG ACTTGTGCCATAACTCACTCCCAATCTCATCCATCTATTGTGTTCTATTG TGTACGTGAGAGAGCAGGTCTGATGTGGGTAACGTTGAGGCAGCACTTGC AAAGGTGACGTCAGTCTGTGAGTTTCTGGATGAAACAGACAGACGAGTTG ATGCATTGGAGGGAGGCATGAACCGAGCAGAGGTGGGGAGGGGACTCTCA CTTGTCACTTCCCATGCCATCTTTTTAGACCTCACTTTTCATGCCTTTCG TGTAGGGAAAATTGGCTACACATGCCACCTCCCTGGACACCCTTGTGGAG ACTGCTAAAAAAATAAATAGGGAGCTGGAGGTTTGTCGGTCACCTCACTG GCACCCAGAGCGTTTCCCATACACCCCTTCTTGTTTGCTGATTCATTCAA CTAAAGCTGTGATCTTTAGTTGTGACCTTCGTGCCACCCGATCCCATCAG GACAAGACAAATATCTCCAACTGCTTAAAAGTGCAGAGAGAAGTGACAGA TCTGCATGCACTGTTGGACAGCTACACGCAAAAGTCAGGCGAGAGAATAG GCGCATGTGAAGAAGGATTAGGGCAACTTACTGAGGTCTCTGGCAGCCTT ATGGCATGACCTGCAAGCCGCCCTGCCCTCCTTGTCCTTCCTAGCTCTAA CTCTTTTGCTGCCTTGCTCTCCCAAACTAGGAGGTTAATGAGCTCGGGTC AATCGCTGTAGGAAGGCTAGAGGCTTTGGAGGCAGAGGCCAAGACACTTG CTACCAAAGAGGAGACGGACCAGAAAGCTGACCTAGGTACTAATTTTACT TTTTTCCTTTGAGAATCAGTCCTCTCGACTTTCGCTGTCTCTTACACCAA CTCAATACCCTCAGTACTCTGTGATGGCCTCTGGGGGGAGCTGAGGCATG AGTTGAGCTGCAAGGCATGGAAGAGTGATGTGAAGAATGTGCAGGAAGCT CTATCACTGTTAAGAGATGATCACGCTCGGACAGCCAAGGAGGCAGGTCT TGCTATTAGGTTTGTGGACTGGTTTGGTGAGAGAGGTGGTGCCTACGAGC ACAACCTCTCAGCGATAGAGCGGAAGATTGAGTCGCTCACTGTGGACTCA CATCCTGGCGCCAGAACTCCCTTCTCGGGCAGGGTCAAGTTTACACCGTA GTGTAGTAATTAATTTTCATGAATTGCAAATATATTTAGTCGCAC
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Coding sequence (CDS) from alignment at C-australica_Contig_1024:8582..10326+

>mRNA_C-australica_Contig_1024.6.1 ID=mRNA_C-australica_Contig_1024.6.1|Name=mRNA_C-australica_Contig_1024.6.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=852bp|location=Sequence derived from alignment at C-australica_Contig_1024:8582..10326+ (Chrysoparadoxa australica CS_1217)
ATGGCAGAGAAGGTGAAGGACTTGAAAAAGTGGAGCATGAGCAGGGATGT
AGGGGACAACATTGCCAGAGCACAGCAAGCCCTAGGAGATCAGCTCGCTT
TAGTTTCAGAGTTGGTAGCAAGAAAGATAGACAGGTCTGATGTGGGTAAC
GTTGAGGCAGCACTTGCAAAGGTGACGTCAGTCTGTGAGTTTCTGGATGA
AACAGACAGACGAGTTGATGCATTGGAGGGAGGCATGAACCGAGCAGAGG
GAAAATTGGCTACACATGCCACCTCCCTGGACACCCTTGTGGAGACTGCT
AAAAAAATAAATAGGGAGCTGGAGGACAAGACAAATATCTCCAACTGCTT
AAAAGTGCAGAGAGAAGTGACAGATCTGCATGCACTGTTGGACAGCTACA
CGCAAAAGTCAGGCGAGAGAATAGGCGCATGTGAAGAAGGATTAGGGCAA
CTTACTGAGGAGGTTAATGAGCTCGGGTCAATCGCTGTAGGAAGGCTAGA
GGCTTTGGAGGCAGAGGCCAAGACACTTGCTACCAAAGAGGAGACGGACC
AGAAAGCTGACCTAGTACTCTGTGATGGCCTCTGGGGGGAGCTGAGGCAT
GAGTTGAGCTGCAAGGCATGGAAGAGTGATGTGAAGAATGTGCAGGAAGC
TCTATCACTGTTAAGAGATGATCACGCTCGGACAGCCAAGGAGGCAGGTC
TTGCTATTAGGTTTGTGGACTGGTTTGGTGAGAGAGGTGGTGCCTACGAG
CACAACCTCTCAGCGATAGAGCGGAAGATTGAGTCGCTCACTGTGGACTC
ACATCCTGGCGCCAGAACTCCCTTCTCGGGCAGGGTCAAGTTTACACCGT
AG
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