mRNA_C-australica_Contig_10204.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_10204.1.1
Unique NamemRNA_C-australica_Contig_10204.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: A0A239FU87_9RHOB (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=5 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A239FU87_9RHOB)

HSP 1 Score: 329 bits (843), Expect = 9.740e-113
Identity = 164/175 (93.71%), Postives = 169/175 (96.57%), Query Frame = 1 
Query:    4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            LH +VG I ALVNNAGVHLKKP+W+VAPDELDRVLDINVRAMFAACGRYVDLHRE GGA+VNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFG PQDVAD VFYLASDRA+YVNGVNLPVDGGYAVGF
Sbjct:   63 LHGRVGTIAALVNNAGVHLKKPIWDVAPDELDRVLDINVRAMFAACGRYVDLHRETGGAVVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGTPQDVADAVFYLASDRAAYVNGVNLPVDGGYAVGF 237
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BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: A0A0W7WHA7_9RHOB (Uncharacterized protein n=1 Tax=Ponticoccus marisrubri TaxID=1685382 RepID=A0A0W7WHA7_9RHOB)

HSP 1 Score: 313 bits (803), Expect = 1.160e-106
Identity = 154/176 (87.50%), Postives = 166/176 (94.32%), Query Frame = 1 
Query:    1 ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            +LH +VGPI ALVNNAGVHLKKPVW+VAPDELDRVLDIN+RAMFAACGRYV LHR+ GGAIVNIASMG +MALPSAAAYVTAKT VVGLTRSVAVDAAPFGIRCNAVSPGFI+TDMTRA+LAKDPARR++IEGRIPSH FG P +VAD VFYLASDRA+YVNGVNLPVDGGYAVGF
Sbjct:   61 DLHGRVGPIAALVNNAGVHLKKPVWDVAPDELDRVLDINLRAMFAACGRYVALHRDTGGAIVNIASMGAVMALPSAAAYVTAKTGVVGLTRSVAVDAAPFGIRCNAVSPGFIDTDMTRAVLAKDPARRERIEGRIPSHQFGTPANVADAVFYLASDRAAYVNGVNLPVDGGYAVGF 236
[Close]
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI0014883BF3 (SDR family oxidoreductase n=4 Tax=Ruegeria TaxID=97050 RepID=UPI0014883BF3)

HSP 1 Score: 313 bits (801), Expect = 2.510e-106
Identity = 151/175 (86.29%), Postives = 168/175 (96.00%), Query Frame = 1 
Query:    4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            LH++VGP+ ALVNNAGVHLKKP+W+VAPDELD VLDINVRAMFA CGRYV LHREVGGAIVN+ASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAP+GIRCNAVSPGFI+TDMTRA+LA+DPARRDKIEGRIP+H FG P+DVA+ +FYLASD+A+YVNGVNLPVDGGYA+GF
Sbjct:   64 LHSEVGPLAALVNNAGVHLKKPIWDVAPDELDTVLDINVRAMFAICGRYVALHREVGGAIVNVASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPYGIRCNAVSPGFIDTDMTRAVLARDPARRDKIEGRIPTHRFGLPEDVANSIFYLASDQAAYVNGVNLPVDGGYAIGF 238
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BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: A0A1I6HEB7_9RHOB (Gluconate 5-dehydrogenase n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A1I6HEB7_9RHOB)

HSP 1 Score: 305 bits (781), Expect = 2.780e-103
Identity = 149/176 (84.66%), Postives = 164/176 (93.18%), Query Frame = 1 
Query:    1 ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            ++HA+ GPI+ALVNNAGVHLKKPVW+V+PDE D VLD+NVRAMFA+CGRYV+LHR+ GGAIVNIASMGGIM LPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRAILAKDPARRDKIEGRIP   FG PQDVA+ V+YLASD+A+YVNG NLPVDGGYAVGF
Sbjct:   63 DIHAKAGPISALVNNAGVHLKKPVWDVSPDEFDMVLDVNVRAMFASCGRYVNLHRDTGGAIVNIASMGGIMGLPSAAAYVTAKTAVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAILAKDPARRDKIEGRIPGRKFGTPQDVANTVYYLASDQAAYVNGANLPVDGGYAVGF 238
[Close]
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI0015CA6399 (SDR family oxidoreductase n=1 Tax=Jannaschia marina TaxID=2741674 RepID=UPI0015CA6399)

HSP 1 Score: 305 bits (781), Expect = 2.780e-103
Identity = 152/176 (86.36%), Postives = 162/176 (92.05%), Query Frame = 1 
Query:    1 ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            ++HA+ GPI ALVNNAGVHLKKPVW+VAP E D VLDINVRAMFAACG YV+LHRE GGAIVNIASMG IMALPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFIETDMTRAILAKD ARR++IEGRIP+H FG P+DVAD VFYLASDRA YVNGVN+PVDGGYAVGF
Sbjct:   63 DIHAEAGPINALVNNAGVHLKKPVWDVAPAEFDHVLDINVRAMFAACGHYVELHRETGGAIVNIASMGAIMALPSAAAYVTAKTAVVGLTRSVAVDAAGFGIRCNAVSPGFIETDMTRAILAKDLARRERIEGRIPTHRFGTPEDVADAVFYLASDRARYVNGVNMPVDGGYAVGF 238
[Close]
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI0008D523D8 (SDR family oxidoreductase n=1 Tax=Marinovum algicola TaxID=42444 RepID=UPI0008D523D8)

HSP 1 Score: 300 bits (769), Expect = 1.870e-101
Identity = 144/175 (82.29%), Postives = 164/175 (93.71%), Query Frame = 1 
Query:    4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            +HA  GPI ALVNNAGVH KKP+WEV P+ LD+VLDINVRAMFAACGRYV LH++ GGAIVN++SMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRA+LAKDPARRD+IE RIP+H+FG+P+DVA+ +FYLASD+A+YVNGVNLPVDGGYA+GF
Sbjct:   64 IHAGAGPIAALVNNAGVHFKKPIWEVPPEALDQVLDINVRAMFAACGRYVSLHQDSGGAIVNVSSMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAVLAKDPARRDRIESRIPTHSFGQPEDVANAIFYLASDQAAYVNGVNLPVDGGYAIGF 238
[Close]
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI000B0190BC (SDR family oxidoreductase n=2 Tax=Ectothiorhodospiraceae TaxID=72276 RepID=UPI000B0190BC)

HSP 1 Score: 298 bits (763), Expect = 1.530e-100
Identity = 143/175 (81.71%), Postives = 162/175 (92.57%), Query Frame = 1 
Query:    4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            +HA+ GP+  LVNNAGVHLKKPVWEVAPDELDRVL +NVR+MF ACGRYV LHR+ GGAIVN+ASMGG+MALPSAAAY+TAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRA+LAKDPARR++IE RIP+ AFG P+DVAD +FYLASD+A+YVNGVNLPVDGGY +GF
Sbjct:   64 IHAKAGPLAVLVNNAGVHLKKPVWEVAPDELDRVLSVNVRSMFIACGRYVTLHRKTGGAIVNLASMGGMMALPSAAAYITAKTAVVGLTRSVAVDAAEFGIRCNAVSPGFIDTDMTRAVLAKDPARRERIERRIPTGAFGTPEDVADAIFYLASDQAAYVNGVNLPVDGGYVIGF 238
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BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI0009E5265C (SDR family oxidoreductase n=1 Tax=Pseudorhodobacter wandonensis TaxID=1120568 RepID=UPI0009E5265C)

HSP 1 Score: 298 bits (762), Expect = 2.170e-100
Identity = 149/176 (84.66%), Postives = 161/176 (91.48%), Query Frame = 1 
Query:    1 ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            ++HA+ GPI ALVNNAGVHLKKPVW+V+ DELD VL INV AMFAACGRY+ LHR+ GGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRAILAKDPARRDKIEGRIP   FG P+DVA+ VFYLASD+A+YVNGVNL VDGGYAVGF
Sbjct:   63 QIHAKAGPIAALVNNAGVHLKKPVWDVSRDELDHVLGINVGAMFAACGRYIALHRDTGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAILAKDPARRDKIEGRIPGRKFGTPEDVANAVFYLASDQAAYVNGVNLQVDGGYAVGF 238
[Close]
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: A0A1M5QJ24_9RHOB (Gluconate 5-dehydrogenase n=1 Tax=Cognatishimia maritima TaxID=870908 RepID=A0A1M5QJ24_9RHOB)

HSP 1 Score: 296 bits (757), Expect = 1.250e-99
Identity = 146/172 (84.88%), Postives = 160/172 (93.02%), Query Frame = 1 
Query:   13 QVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            + GPI ALVNNAGVHLKKP+W+VA DELD VL+INVRAMFAACG YV LH+E GGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRA+LAKDPARRDKIEGRIP+H FG  +DVA+ +FYLASD+A+YVNGVNLPVDGGYA+GF
Sbjct:   67 EYGPIAALVNNAGVHLKKPIWDVAADELDTVLNINVRAMFAACGAYVRLHKETGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAVLAKDPARRDKIEGRIPTHNFGAAEDVANAIFYLASDQAAYVNGVNLPVDGGYAIGF 238
[Close]
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Match: UPI000DF36A2E (SDR family oxidoreductase n=1 Tax=Notoacmeibacter marinus TaxID=1876515 RepID=UPI000DF36A2E)

HSP 1 Score: 285 bits (729), Expect = 2.290e-95
Identity = 138/175 (78.86%), Postives = 159/175 (90.86%), Query Frame = 1 
Query:    4 LHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRYVDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPFGIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVVFYLASDRASYVNGVNLPVDGGYAVGF 528
            +HA+ G +  LVNNAG+HLKKPVW V+ DE D VL++N+RAMF ACGR+V LHR+ GGAIVN+ASMGGIMALPSAAAYVTAKT VVGLTRSVAVDAA FGIRCNAVSPGFI+TDMTRA+LAKDPARR+KIEGRIP+H FG P+DVA+ +FYLAS++A+YVNGVNLPVDGGYAVGF
Sbjct:   64 IHAEHGNLDVLVNNAGLHLKKPVWNVSSDEFDAVLNLNIRAMFMACGRFVALHRKHGGAIVNVASMGGIMALPSAAAYVTAKTGVVGLTRSVAVDAAQFGIRCNAVSPGFIDTDMTRAVLAKDPARREKIEGRIPTHRFGSPEDVANAIFYLASEQAAYVNGVNLPVDGGYAVGF 238
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_10204.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A239FU87_9RHOB9.740e-11393.71NAD(P)-dependent dehydrogenase, short-chain alcoho... [more]
A0A0W7WHA7_9RHOB1.160e-10687.50Uncharacterized protein n=1 Tax=Ponticoccus marisr... [more]
UPI0014883BF32.510e-10686.29SDR family oxidoreductase n=4 Tax=Ruegeria TaxID=9... [more]
A0A1I6HEB7_9RHOB2.780e-10384.66Gluconate 5-dehydrogenase n=2 Tax=Rhodobacterales ... [more]
UPI0015CA63992.780e-10386.36SDR family oxidoreductase n=1 Tax=Jannaschia marin... [more]
UPI0008D523D81.870e-10182.29SDR family oxidoreductase n=1 Tax=Marinovum algico... [more]
UPI000B0190BC1.530e-10081.71SDR family oxidoreductase n=2 Tax=Ectothiorhodospi... [more]
UPI0009E5265C2.170e-10084.66SDR family oxidoreductase n=1 Tax=Pseudorhodobacte... [more]
A0A1M5QJ24_9RHOB1.250e-9984.88Gluconate 5-dehydrogenase n=1 Tax=Cognatishimia ma... [more]
UPI000DF36A2E2.290e-9578.86SDR family oxidoreductase n=1 Tax=Notoacmeibacter ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_10204contigC-australica_Contig_10204:298..828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1469245.JFBG01000001_gene522
PFAMsadh_short_C2
Model size531
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.84e-99
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MURZ@1224|Proteobacteria,1RMUM@1236|Gammaproteobacteria
DescriptionCOG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Cds size531
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586758.6319954-CDS-C-australica_Contig_10204:297..8281682586758.6319954-CDS-C-australica_Contig_10204:297..828Chrysoparadoxa australica CS_1217CDSC-australica_Contig_10204 298..828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_10204.1.1prot_C-australica_Contig_10204.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_10204 298..828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_10204.1.1

>prot_C-australica_Contig_10204.1.1 ID=prot_C-australica_Contig_10204.1.1|Name=mRNA_C-australica_Contig_10204.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=177bp
ELHAQVGPITALVNNAGVHLKKPVWEVAPDELDRVLDINVRAMFAACGRY
VDLHREVGGAIVNIASMGGIMALPSAAAYVTAKTAVVGLTRSVAVDAAPF
GIRCNAVSPGFIETDMTRAILAKDPARRDKIEGRIPSHAFGRPQDVADVV
FYLASDRASYVNGVNLPVDGGYAVGF*
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mRNA from alignment at C-australica_Contig_10204:298..828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_10204.1.1 ID=mRNA_C-australica_Contig_10204.1.1|Name=mRNA_C-australica_Contig_10204.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=531bp|location=Sequence derived from alignment at C-australica_Contig_10204:298..828- (Chrysoparadoxa australica CS_1217)
GAATTGCACGCGCAGGTTGGGCCGATCACGGCGCTGGTGAACAACGCGGG
TGTGCATTTGAAAAAGCCGGTTTGGGAGGTGGCGCCGGACGAGCTGGACC
GCGTGCTGGACATCAACGTGCGCGCCATGTTTGCGGCCTGCGGGCGCTAT
GTGGACCTGCACCGCGAGGTCGGCGGGGCCATCGTGAATATCGCCTCGAT
GGGCGGGATCATGGCGCTGCCCTCTGCCGCCGCCTATGTCACGGCCAAGA
CGGCGGTGGTGGGGCTGACCCGCTCTGTGGCCGTGGATGCCGCGCCCTTT
GGCATCCGCTGTAACGCCGTCTCTCCGGGTTTCATCGAAACGGACATGAC
CCGCGCGATCCTGGCCAAGGATCCGGCGCGGCGGGACAAGATCGAGGGGC
GCATTCCGTCCCATGCCTTTGGCAGGCCGCAGGATGTGGCCGACGTTGTG
TTTTACCTCGCCTCTGACCGCGCGTCTTACGTCAACGGCGTCAACCTGCC
CGTCGACGGCGGCTATGCGGTGGGGTTCTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_10204:298..828-

>mRNA_C-australica_Contig_10204.1.1 ID=mRNA_C-australica_Contig_10204.1.1|Name=mRNA_C-australica_Contig_10204.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=531bp|location=Sequence derived from alignment at C-australica_Contig_10204:298..828- (Chrysoparadoxa australica CS_1217)
GAATTGCACGCGCAGGTTGGGCCGATCACGGCGCTGGTGAACAACGCGGG
TGTGCATTTGAAAAAGCCGGTTTGGGAGGTGGCGCCGGACGAGCTGGACC
GCGTGCTGGACATCAACGTGCGCGCCATGTTTGCGGCCTGCGGGCGCTAT
GTGGACCTGCACCGCGAGGTCGGCGGGGCCATCGTGAATATCGCCTCGAT
GGGCGGGATCATGGCGCTGCCCTCTGCCGCCGCCTATGTCACGGCCAAGA
CGGCGGTGGTGGGGCTGACCCGCTCTGTGGCCGTGGATGCCGCGCCCTTT
GGCATCCGCTGTAACGCCGTCTCTCCGGGTTTCATCGAAACGGACATGAC
CCGCGCGATCCTGGCCAAGGATCCGGCGCGGCGGGACAAGATCGAGGGGC
GCATTCCGTCCCATGCCTTTGGCAGGCCGCAGGATGTGGCCGACGTTGTG
TTTTACCTCGCCTCTGACCGCGCGTCTTACGTCAACGGCGTCAACCTGCC
CGTCGACGGCGGCTATGCGGTGGGGTTCTGA
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