mRNA_C-australica_Contig_102.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_102.2.1
Unique NamemRNA_C-australica_Contig_102.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A6H5K3J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J5_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 1.550e-60
Identity = 146/287 (50.87%), Postives = 180/287 (62.72%), Query Frame = 1
Query:   64 GLLKAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEYGAFDRKFMTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSPDGFLLASASGNGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVESLEFFCASPPDSSPVVSLGFSSNGSEVYAASHSSLRCITWDNDTAVAQVERSGEMSWG--GVQAMHITAEKQ 918
            G    FKAHE+VAH+   NCV +GPRSG VLATGG+DKRVNVW++GRAS+IWSLTGNSS IE+L FDP EE LVSGS+GGAVKL+DL  GK+ R+FRGHMSNVT I+ G+FDR+F+TT                                FSPDG +LASA+ +G+                         XXXXXXXXXXXXXXXXXXXXXX E +E FC + PD+ P  ++ F  +G ++Y AS S LR  +WDN  A AQ+E  G++ WG  G  A+H  A+ Q
Sbjct:   10 GSFAGFKAHEFVAHAGKTNCVAVGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSGIESLRFDPTEEFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFVTTGSMDCQVTDVQ---------------------FSPDGHILASAAADGQVKLWDLRAGKPMHTFQACSGAVRAIXXXXXXXXXXXXXXXXXXXXXXXEFMELFCPTAPDTCPTRAITFDPDGQKMYCASPSGLRRWSWDNHIASAQLEAMGDVPWGKVGAGALHYNADGQ 275          
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: D8LQ17_ECTSI (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ17_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 1.730e-60
Identity = 198/287 (68.99%), Postives = 231/287 (80.49%), Query Frame = 1
Query:   64 GLLKAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEYGAFDRKFMTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSPDGFLLASASGNGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVESLEFFCASPPDSSPVVSLGFSSNGSEVYAASHSSLRCITWDNDTAVAQVERSGEMSWG--GVQAMHITAEKQ 918
            G   AFKAHE+VAH+   NCV +GPRSG VLATGG+DKRVNVW++GRAS+IWSLTGNSS IE+L FDP EE LVSGS+GGAVKL+DL  GK+ R+FRGHMSNVT I+ G+FDR+F+  XXXXXXXXXXXXXXXXXXXXXXXXXXXX    FSPDG +LASA+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E +E FC + PD+ P  ++ F  +G ++Y AS S LR  +WDNDTA A++E  G++ WG  G  A+H  A+ Q
Sbjct:   10 GSFAAFKAHEFVAHAGKTNCVAVGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTEEFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVQFSPDGHILASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFMELFCPTAPDTCPTRAITFDPDGQKMYCASPSGLRRWSWDNDTASARLEAMGDVPWGKVGAGALHYNADGQ 296          
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A836CLK5_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK5_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.710e-53
Identity = 141/307 (45.93%), Postives = 167/307 (54.40%), Query Frame = 1
Query:   79 FKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEYGAFDRKFMTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSPDGFLLASASGNGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV------ESLEFFCASPPDSSPVVSLGFSSNGSEVYAASHSSLRCITWDNDTAVAQVERSGEMSWGGVQAMHITAEKQVVAASCASNFVTVWAVDLDDA 981
            FKAHE+VAHST VNCV IGP  GAVLATGGEDKRVNVWK+GRA++IWSL GNSSPIE + FD  EE L SGSSGGAVK YDL VGK+ RNFRGHMSNVTA+  GAFD  ++ T                                FSPDGFLLAS + +G+                              XXXXXXXXXXXXXXXXX       E +E FCA+ P+SS   ++ F++ G+                                   +A+H   E QVVAA+  SNFV++WA D+DDA
Sbjct:   13 FKAHEFVAHSTKVNCVAIGPH-GAVLATGGEDKRVNVWKIGRANHIWSLAGNSSPIECVCFDHAEENLYSGSSGGAVKQYDLTVGKMARNFRGHMSNVTALHSGAFDSAYLATGALDCVVKVWNTATKECVMAFKGHGAEVCEVQFSPDGFLLASGARDGDVRIWDVRAGKLLHAFAACGGGSGGGSGVRAXXXXXXXXXXXXXXXXXXXXXXXXEEMELFCATSPESSQFHAMAFNAEGN-----------------------------------RALHYNPEGQVVAATSTSNFVSIWAFDVDDA 283          
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A482STH4_9ARCH (Katanin_con80 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STH4_9ARCH)

HSP 1 Score: 121 bits (304), Expect = 3.270e-26
Identity = 55/105 (52.38%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   73 KAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEY 387
            ++ +  E+VAHST VNC+ +G +S  VLATGGED +VN+W+VG  SNIW+L  N SPIE L FD  E  +VSG+  G++K++DL  GKL RN   H  NVT+++Y
Sbjct:    8 ESVRVQEFVAHSTQVNCLALGSKSSQVLATGGEDAKVNIWRVGSVSNIWTLGQNKSPIECLCFDADELCVVSGAMNGSLKVFDLNEGKLARNLGSHQVNVTSVQY 112          
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: F0YMU1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMU1_AURAN)

HSP 1 Score: 112 bits (279), Expect = 6.010e-25
Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 1
Query:   76 AFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGR----ASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNV 372
            A K HE+VA   +V CV +GPRS  VLA+GGEDKR NVW++      A N+WSL GNSSPI  L FD  E  LVSG+ GG+V+LYDL  G+  R   GH + V
Sbjct:    3 AAKLHEWVASPAVVTCVALGPRSHQVLASGGEDKRANVWRLRPGDPGAQNVWSLGGNSSPISCLCFDDAENTLVSGAQGGSVRLYDLTEGRCARALNGHRNEV 105          
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A1D1UXW2_RAMVA (Katanin p80 WD40 repeat-containing subunit B1 n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UXW2_RAMVA)

HSP 1 Score: 115 bits (289), Expect = 2.680e-24
Identity = 88/301 (29.24%), Postives = 130/301 (43.19%), Query Frame = 1
Query:   73 KAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEYGAFDRKFMTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSPDGFLLASASGNGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVESLEFFCASPPDSSPVVSLGFSSNGSEVYAASHSSLRCITWDNDTAVAQVERSGEMSWGGVQAMHIT-AEKQVVAASCASNFVTVWAVDL 972
            K  K  E  AHS+ V CV +G  +G VLATGG D  VN+W +G+ + + SL G SS  E + FDP EE + +GSS GA+K++D++  K++RN  GH + VTA+++ +FD  FM +      XXXXX                     FSP G  + S   +G                                                +E+ E   ++  DSSPV  + F  +GS + A     L+   W+       +     + WG V  M ++ +  Q+V AS     V  + VDL
Sbjct:    6 KITKIQELEAHSSAVTCVALGQLNGRVLATGGADCFVNLWVLGQKTALKSLPGLSSAAECVRFDPTEESVAAGSSSGALKIWDIEADKIKRNLTGHKTGVTALDFLSFDPNFMVSGSADCTXXXXXLRRKTCVVSYKGHQDTVREVLFSPHGKWITSGGIDGTIQIYQWQAGKSLKELIHAKAAVYSLAFHPKDLLLASTGQDGVVKFWDLETFEVVSSTEKDSSPVRCIRFQKDGSSLLAGCDDMLKVFGWEPAVCHDVIP----VGWGRVADMAVSGSSSQLVTASAGKTSVATYLVDL 302          
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A1B6FE44_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6FE44_9HEMI)

HSP 1 Score: 105 bits (261), Expect = 5.770e-24
Identity = 46/102 (45.10%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   73 KAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTA 378
            + +K  E+ AHS  VNC+ +G +SG VL TGG+DK+VN+W +G+ + I SL G+ +P+E + F+  EEL+ +GSSGG +K++DL+  K+ R   GH S + A
Sbjct:    7 RLWKVQEFKAHSANVNCLALGQKSGRVLVTGGDDKKVNLWAIGKNNCIMSLNGHITPVETVRFNHTEELVAAGSSGGVLKIWDLEATKIMRTLTGHRSGLRA 108          
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A7S2CHB8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2CHB8_9DINO)

HSP 1 Score: 105 bits (262), Expect = 1.610e-23
Identity = 45/105 (42.86%), Postives = 74/105 (70.48%), Query Frame = 1
Query:   73 KAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEY 387
            + +K  EY AH+    C  +G +SG VLATGGED+RVN+WKVG+++ + SLTG++S +E L FD  EE+LV G +GG++++++L+  K+     GH +  +++E+
Sbjct:   43 RVWKLQEYTAHAGCTRCARLGEKSGQVLATGGEDRRVNIWKVGKSNAMMSLTGHNSTVECLVFDKQEEVLVVGCAGGSMQVWNLEYRKMAGTLTGHRTGCSSVEF 147          
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A3B4BK80_9GOBI (Katanin p80 (WD repeat containing) subunit B 1 n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4BK80_9GOBI)

HSP 1 Score: 105 bits (261), Expect = 1.620e-22
Identity = 57/153 (37.25%), Postives = 83/153 (54.25%), Query Frame = 1
Query:   91 EYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEYGAFDRKFMTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSPDGFLLASAS 549
            E+ AH++ V+C+ +G  SG +LATGGED RVN+W V +A+ I SLTG+ SP+E L  +  EE +V+GS  G++K++DL+  KLR    GH +N+T++        F+ +                                FSPDG  LASAS
Sbjct:   14 EFEAHTSRVSCLSLGKSSGRLLATGGEDCRVNIWAVSKANCIMSLTGSKSPVECLQLNASEEQVVAGSQSGSIKIWDLEAAKLR-TLMGHKANITSLGCHPLSENFLASSSMDTNIKLWDVRRKGYILRYQGHTDAVRSLAFSPDGKWLASAS 165          
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Match: A0A383W973_TETOB (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W973_TETOB)

HSP 1 Score: 110 bits (274), Expect = 2.400e-22
Identity = 50/116 (43.10%), Postives = 78/116 (67.24%), Query Frame = 1
Query:   70 LKAFKAHEYVAHSTLVNCVVIGPRSGAVLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSGGAVKLYDLQVGKLRRNFRGHMSNVTAIEYGAFDRKFMTT 417
            ++++K  E+VAHS  VNC+ IG  +  VLATGGEDK+VN+W++G+   I +L G +SP+E + FDP E+ + +G++ G VK++DL  GK+  +  GH SN   IE+G  +   + T
Sbjct:    1 MRSYKLDEFVAHSGAVNCLRIGRNTAGVLATGGEDKKVNLWRIGQPHVIQTLVGLNSPVECVTFDPAEDKVGAGAANGTVKVWDLDTGKVCCSLTGHRSNCLTIEFGPPESNIVVT 116          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_102.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3J5_9PHAE1.550e-6050.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ17_ECTSI1.730e-6068.99Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
A0A836CLK5_9STRA1.710e-5345.93WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A482STH4_9ARCH3.270e-2652.38Katanin_con80 domain-containing protein n=1 Tax=ar... [more]
F0YMU1_AURAN6.010e-2554.37Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A1D1UXW2_RAMVA2.680e-2429.24Katanin p80 WD40 repeat-containing subunit B1 n=1 ... [more]
A0A1B6FE44_9HEMI5.770e-2445.10Uncharacterized protein (Fragment) n=2 Tax=Cicadel... [more]
A0A7S2CHB8_9DINO1.610e-2342.86Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A3B4BK80_9GOBI1.620e-2237.25Katanin p80 (WD repeat containing) subunit B 1 n=1... [more]
A0A383W973_TETOB2.400e-2243.10Katanin p80 WD40 repeat-containing subunit B1 homo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_102contigC-australica_Contig_102:1919..5063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LQ17
Preferred nameKATNB1
PFAMsKatanin_con80,WD40
Model size1212
Max annot lvl2759|Eukaryota
KEGG koko:K18643
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000226,GO:0000922,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005886,GO:0006605,GO:0006810,GO:0006886,GO:0006996,GO:0007010,GO:0007017,GO:0007026,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008352,GO:0009987,GO:0010638,GO:0010639,GO:0010720,GO:0010941,GO:0010942,GO:0010975,GO:0010976,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0016020,GO:0016043,GO:0022008,GO:0030154,GO:0030424,GO:0030426,GO:0030427,GO:0030496,GO:0030901,GO:0031110,GO:0031111,GO:0031112,GO:0031114,GO:0031117,GO:0031344,GO:0031346,GO:0031461,GO:0032501,GO:0032502,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033267,GO:0034613,GO:0036477,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043243,GO:0043244,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044877,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046907,GO:0046982,GO:0046983,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051013,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051493,GO:0051494,GO:0051495,GO:0051641,GO:0051649,GO:0051960,GO:0051962,GO:0060284,GO:0060322,GO:0065007,GO:0070507,GO:0070727,GO:0070840,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080008,GO:0097458,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120035,GO:0120038,GO:0150034,GO:1901879,GO:1901880,GO:1901881,GO:1902494,GO:1902903,GO:1902904,GO:1902905,GO:1990234,GO:2000026
Exons15
Evalue2.83e-61
EggNOG OGsKOG0267@1|root,KOG0267@2759|Eukaryota
Descriptionmicrotubule severing
Cds size1212
COG categoryE
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682586754.6681244-CDS-C-australica_Contig_102:1918..20321682586754.6681244-CDS-C-australica_Contig_102:1918..2032Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 1919..2032 +
1682586754.683362-CDS-C-australica_Contig_102:2106..21551682586754.683362-CDS-C-australica_Contig_102:2106..2155Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 2107..2155 +
1682586754.6935065-CDS-C-australica_Contig_102:2237..23471682586754.6935065-CDS-C-australica_Contig_102:2237..2347Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 2238..2347 +
1682586754.704184-CDS-C-australica_Contig_102:2424..25061682586754.704184-CDS-C-australica_Contig_102:2424..2506Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 2425..2506 +
1682586754.716067-CDS-C-australica_Contig_102:2604..26671682586754.716067-CDS-C-australica_Contig_102:2604..2667Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 2605..2667 +
1682586754.7273095-CDS-C-australica_Contig_102:2773..28391682586754.7273095-CDS-C-australica_Contig_102:2773..2839Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 2774..2839 +
1682586754.7350118-CDS-C-australica_Contig_102:2963..30291682586754.7350118-CDS-C-australica_Contig_102:2963..3029Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 2964..3029 +
1682586754.7478297-CDS-C-australica_Contig_102:3259..32951682586754.7478297-CDS-C-australica_Contig_102:3259..3295Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 3260..3295 +
1682586754.7560809-CDS-C-australica_Contig_102:3396..34881682586754.7560809-CDS-C-australica_Contig_102:3396..3488Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 3397..3488 +
1682586754.7642806-CDS-C-australica_Contig_102:3647..37201682586754.7642806-CDS-C-australica_Contig_102:3647..3720Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 3648..3720 +
1682586754.7736168-CDS-C-australica_Contig_102:3864..39651682586754.7736168-CDS-C-australica_Contig_102:3864..3965Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 3865..3965 +
1682586754.7838066-CDS-C-australica_Contig_102:4180..42461682586754.7838066-CDS-C-australica_Contig_102:4180..4246Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 4181..4246 +
1682586754.7951934-CDS-C-australica_Contig_102:4440..45361682586754.7951934-CDS-C-australica_Contig_102:4440..4536Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 4441..4536 +
1682586754.804317-CDS-C-australica_Contig_102:4603..47251682586754.804317-CDS-C-australica_Contig_102:4603..4725Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 4604..4725 +
1682586754.8118777-CDS-C-australica_Contig_102:4987..50631682586754.8118777-CDS-C-australica_Contig_102:4987..5063Chrysoparadoxa australica CS_1217CDSC-australica_Contig_102 4988..5063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_102.2.1prot_C-australica_Contig_102.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_102 1919..5063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_102.2.1

>prot_C-australica_Contig_102.2.1 ID=prot_C-australica_Contig_102.2.1|Name=mRNA_C-australica_Contig_102.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=404bp
PSPPHLAPCPPIPMLGIYQQQGLLKAFKAHEYVAHSTLVNCVVIGPRSGA
VLATGGEDKRVNVWKVGRASNIWSLTGNSSPIEALAFDPMEELLVSGSSG
GAVKLYDLQVGKLRRNFRGHMSNVTAIEYGAFDRKFMTTGSMDTVVKLWG
IDSKECAMSFKGHSSQVTAVTFSPDGFLLASASGNGEIKLWDLRGGKLLH
SFDAGPGVVKDIHFSPVEFLLAAATADRCVRLYDVESLEFFCASPPDSSP
VVSLGFSSNGSEVYAASHSSLRCITWDNDTAVAQVERSGEMSWGGVQAMH
ITAEKQVVAASCASNFVTVWAVDLDDAEEPQALALPPKVRKPSRGSSRVQ
GSSSNGSGGSKDHSEQKGTGLEVPSFQIRGTHLGSPRLSPRVADEKVTAH
PRT*
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mRNA from alignment at C-australica_Contig_102:1919..5063+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_102.2.1 ID=mRNA_C-australica_Contig_102.2.1|Name=mRNA_C-australica_Contig_102.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=3145bp|location=Sequence derived from alignment at C-australica_Contig_102:1919..5063+ (Chrysoparadoxa australica CS_1217)
CCTTCGCCGCCGCATCTTGCCCCTTGTCCCCCCATCCCGATGCTGGGGAT CTACCAACAGCAGGGCTTGTTAAAGGCATTCAAGGCCCATGAATATGTAG CCCACAGCACACTGGTCAGTTATCCCTCGATGCGGTGGTCTATAGCAGTA ACCAGCCTGACTTGGCCTGGATCTCCCCTCCCAACCAGGTGAACTGTGTC GTGATAGGGCCCAGGAGCGGTGCAGTCTTAGCAACAGGTGAGGGGAAGGA ATGATCTTTTGCCAGACTGGCTATGGATGGCATTGATCTGATTTGGATTG GTTCGTCTAAATTCTTAAGGTGGGGAAGATAAGCGCGTAAATGTATGGAA GGTGGGCCGCGCCAGCAACATTTGGAGCCTCACTGGCAACAGCTCACCCA TTGAAGCCTTGGCATTTGACCCAATGGAGGTGAGTAGGCTGGCCTGGTGT CTGAGCCCAGCCCCAGCCTTACGTGAGCTGACCCTGTGATGGGTTGCTAC CGTCAGGAGCTTTTAGTCAGTGGTAGCAGTGGTGGGGCAGTCAAGTTGTA CGACTTGCAAGTGGGAAAGCTGCGGCGAAACTTTAGAGGTAACCCTGCTT TATTGATTCATCATCACCTGAGCCCTTCCTGTAACTTCTGCACGAGGGAT CCATACAATCCCACGTTAAACTTTGACCCTCTTCAGGTCACATGAGCAAT GTCACTGCAATAGAGTACGGTGCCTTTGACAGGAAGTTCATGACTACAGG TCAGGAGGTTGCCTGTTTAACAGCTCCTCAACCAGCGCAATGTCTCAAGC TACCCTTGCTGCATTTTTTCACGTACCTGCGCTGAAGTTAAGTAACCTAC CTCAGGATCCATGGACACGGTTGTGAAACTCTGGGGCATTGACTCGAAGG AGTGCGCCATGTCTTTCAAGGGTGAGCAGCTGCCTCTGCTCCACCAGCAT TGATGCTGACATGAATGGCTAGACTTAGTTACTGAGTCCATGCTTGGATG TAACCTCTGGCTTGAGCTGCGCTGATGTACTCTTCTCTTTGCTAGGCCAC TCATCCCAGGTAACCGCAGTGACCTTCAGCCCTGATGGGTTTCTGCTGGC TTCTGCCTCTGGTGAGTGAGAATTGAACTGAGAGAAAACCGACTTGAGGG ATGAGCGGAAGGGTGTGCATGTATGCCAATGTGAATTCGATTGATTTTGG CCTGTATGATTGGTTTCAAAAGAGAGGGGAGTAAGGTCATGCAGACCAGA GCAGGAGAGCTTTGAGGCATCATGGGCTCAATACTTTCTCTCATTCTCTC TCCTTGTGCGTTAATTGTCACGGCTTTCCTCTGTGCTTCAGGGAATGGTG AGATAAAACTTTGGGACTTGAGAGGAGGTGAGTTGGAGATCTGCCTGAAG CCCTCCTGAGCCTTATCGAATGCTTCATAACCATTACTCTGCCATTGCAG CTGCTAACCTTTGCTCTCAATGGCTCAGGCAAGCTATTGCACTCCTTTGA TGCTGGCCCTGGGGTTGTGAAGGATATTCACTTTAGTCCTGTGGAGTTCC TTCTGGCAGCTGCTACTGCGGTAGGCCCCCTGAAACGAAGCACAAGCACC TCCGTTGAGCTTGAATACCTCTTTGCTTTTGCCTCCTTCACTGATAGCCT AATTAATGCGCTAGCTACATGACCCGACCTTTACGCAACCTAACATGACC TCTTCCACTCAATATGATTCTATCAACAGGACCGCTGTGTCCGTCTGTAT GATGTCGAGAGCCTGGAGTTCTTCTGTGCCAGTCCCCCTGACAGCTCCCC AGGTGCACCCCTGAACCCAATTGAAAGACATGAAAAGTTTCGCTCTCCTG TCCAAAGCTGTTGACAGTCTACCTGGAACCGATTGGCCTAGACCACCTGC CCTAGCCTCAGCTCAAGCTCAACTAAGCTCCCTCTCATCCCCGCAGTGGT ATCCCTGGGGTTCAGTAGCAATGGGTCGGAAGTTTATGCTGCCAGCCACT CCTCCCTTCGCTGTATCACGTGGGACAATGATACCGCTGTTGCGCAGGTA CTCACTCGAAGGAAGTGTCACAGCCCAGCCTAGCCAAGCCAAGCAGCAGT TTGCTCTGGCCTGGTTTAAGTCACTAGTGATAGCACCACTGCTGCTGCTG CTCTAGCTGTCCCTGCCGAGTCACAGCACAGTGCCAAGCCAAATGGCATG TGATAAGAACCCTACCCGAGCAGCCTAGGAGCCTTGCCTTCCTCACTAAA GGCTTCTGTAAGGTGGAGCGGTCAGGGGAAATGTCCTGGGGAGGCGTGCA AGCCATGCACATCACTGCTGAGAAGCAGGTAGTCAACCTGAAGGCTGAGC TTACTGGAGTTGAACTGAACTGGCCCTTGCTGAATCCGACCAATCACAAC TGAATGATAACTTGCTGCCTTTAATATGGCTGGAAATGATGCGTAAAGCG CAGCATGCCATGCAACTCATTCACCCTCTTGAACCACCTCAACCTTCCCT TCCCTTGCCTCGTGTCTCTTAGGTGGTTGCTGCTTCTTGTGCGAGCAACT TTGTCACTGTGTGGGCAGTAGATCTAGATGATGCGGAAGAACCCCAGGCC CTTGCGCTGCCACCCAAGGTAGGGCATTCCCACGCGCACGGAAGGATGCT CTCGCAACCCAGCACTCACGCTCATGCATCCAAAGGTGCGCAAGCCAAGT CGTGGGTCCTCGCGAGTGCAAGGCTCGAGCTCCAACGGCAGTGGAGGCAG CAAAGACCATAGTGAGCAGAAAGGCACGGGCTTAGAGGTGCCAAGCTTTC AGATCAGGTATGATGTGGCTTACTGCCCAGTGAGATGGAAGTTACTGCTT CATCATCCTGTGATGAGTGTGCTATTGAGTGCAGCACTAACTGTACAGGA GTTTAGTGTTTATTGAGCGATTAGCCTATTCATGACATCCCGAGATATGT GATATGAGTGAATGCATGTAGTGGGCAGATAATGTTATTGCAGCAGCTGT GAGAGAATTTGATGAGCCATCCTTTAGATCTGGACCATTTTTTTGCCTGC TTACCATCATTCCTCTCAGAGGAACTCACTTGGGCAGCCCCAGATTGTCA CCACGAGTGGCTGATGAGAAGGTGACTGCTCACCCGCGTACCTGA
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Coding sequence (CDS) from alignment at C-australica_Contig_102:1919..5063+

>mRNA_C-australica_Contig_102.2.1 ID=mRNA_C-australica_Contig_102.2.1|Name=mRNA_C-australica_Contig_102.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=1212bp|location=Sequence derived from alignment at C-australica_Contig_102:1919..5063+ (Chrysoparadoxa australica CS_1217)
CCTTCGCCGCCGCATCTTGCCCCTTGTCCCCCCATCCCGATGCTGGGGAT
CTACCAACAGCAGGGCTTGTTAAAGGCATTCAAGGCCCATGAATATGTAG
CCCACAGCACACTGGTGAACTGTGTCGTGATAGGGCCCAGGAGCGGTGCA
GTCTTAGCAACAGGTGGGGAAGATAAGCGCGTAAATGTATGGAAGGTGGG
CCGCGCCAGCAACATTTGGAGCCTCACTGGCAACAGCTCACCCATTGAAG
CCTTGGCATTTGACCCAATGGAGGAGCTTTTAGTCAGTGGTAGCAGTGGT
GGGGCAGTCAAGTTGTACGACTTGCAAGTGGGAAAGCTGCGGCGAAACTT
TAGAGGTCACATGAGCAATGTCACTGCAATAGAGTACGGTGCCTTTGACA
GGAAGTTCATGACTACAGGATCCATGGACACGGTTGTGAAACTCTGGGGC
ATTGACTCGAAGGAGTGCGCCATGTCTTTCAAGGGCCACTCATCCCAGGT
AACCGCAGTGACCTTCAGCCCTGATGGGTTTCTGCTGGCTTCTGCCTCTG
GGAATGGTGAGATAAAACTTTGGGACTTGAGAGGAGGCAAGCTATTGCAC
TCCTTTGATGCTGGCCCTGGGGTTGTGAAGGATATTCACTTTAGTCCTGT
GGAGTTCCTTCTGGCAGCTGCTACTGCGGACCGCTGTGTCCGTCTGTATG
ATGTCGAGAGCCTGGAGTTCTTCTGTGCCAGTCCCCCTGACAGCTCCCCA
GTGGTATCCCTGGGGTTCAGTAGCAATGGGTCGGAAGTTTATGCTGCCAG
CCACTCCTCCCTTCGCTGTATCACGTGGGACAATGATACCGCTGTTGCGC
AGGTGGAGCGGTCAGGGGAAATGTCCTGGGGAGGCGTGCAAGCCATGCAC
ATCACTGCTGAGAAGCAGGTGGTTGCTGCTTCTTGTGCGAGCAACTTTGT
CACTGTGTGGGCAGTAGATCTAGATGATGCGGAAGAACCCCAGGCCCTTG
CGCTGCCACCCAAGGTGCGCAAGCCAAGTCGTGGGTCCTCGCGAGTGCAA
GGCTCGAGCTCCAACGGCAGTGGAGGCAGCAAAGACCATAGTGAGCAGAA
AGGCACGGGCTTAGAGGTGCCAAGCTTTCAGATCAGAGGAACTCACTTGG
GCAGCCCCAGATTGTCACCACGAGTGGCTGATGAGAAGGTGACTGCTCAC
CCGCGTACCTGA
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