mRNA_C-australica_Contig_998.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_998.1.1
Unique NamemRNA_C-australica_Contig_998.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_998.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_998contigC-australica_Contig_998:149..1803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size709
Hectar predicted targeting categoryother localisation
Exons6
Cds size561
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_998.1.1prot_C-australica_Contig_998.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_998 149..1655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588865.4068441-CDS-C-australica_Contig_998:148..2451682588865.4068441-CDS-C-australica_Contig_998:148..245Chrysoparadoxa australica CS_1217CDSC-australica_Contig_998 149..245 +
1682588865.419809-CDS-C-australica_Contig_998:438..5331682588865.419809-CDS-C-australica_Contig_998:438..533Chrysoparadoxa australica CS_1217CDSC-australica_Contig_998 439..533 +
1682588865.4313226-CDS-C-australica_Contig_998:647..6771682588865.4313226-CDS-C-australica_Contig_998:647..677Chrysoparadoxa australica CS_1217CDSC-australica_Contig_998 648..677 +
1682588865.4410784-CDS-C-australica_Contig_998:893..9741682588865.4410784-CDS-C-australica_Contig_998:893..974Chrysoparadoxa australica CS_1217CDSC-australica_Contig_998 894..974 +
1682588865.4543822-CDS-C-australica_Contig_998:1155..12801682588865.4543822-CDS-C-australica_Contig_998:1155..1280Chrysoparadoxa australica CS_1217CDSC-australica_Contig_998 1156..1280 +
1682588865.4704268-CDS-C-australica_Contig_998:1522..16551682588865.4704268-CDS-C-australica_Contig_998:1522..1655Chrysoparadoxa australica CS_1217CDSC-australica_Contig_998 1523..1655 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588865.4813485-UTR-C-australica_Contig_998:1655..18031682588865.4813485-UTR-C-australica_Contig_998:1655..1803Chrysoparadoxa australica CS_1217UTRC-australica_Contig_998 1656..1803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_998.1.1

>prot_C-australica_Contig_998.1.1 ID=prot_C-australica_Contig_998.1.1|Name=mRNA_C-australica_Contig_998.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=187bp
GRAALSLAAEAGDGDSVRFLLKGGADTERRDQDGNTALILAAGVDDTAGL
SCVTALLDAGADLEARGESKATALHRAARWGRASIVRLLADRGALIDARN
KFGDTPLILAAYHGNEAAATALLEAGASLHATCNDGRSALFYGAVRGQLP
VVQTLLLFGADPDTPDVQGTKPYPFCEAQWRIGAHM*
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mRNA from alignment at C-australica_Contig_998:149..1803+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_998.1.1 ID=mRNA_C-australica_Contig_998.1.1|Name=mRNA_C-australica_Contig_998.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1655bp|location=Sequence derived from alignment at C-australica_Contig_998:149..1803+ (Chrysoparadoxa australica CS_1217)
GGCCGCGCCGCGTTGAGTCTTGCCGCAGAAGCAGGAGATGGTGATTCCGT
GCGGTTCTTACTCAAGGGGGGAGCGGACACAGAGCGTCGTGATCAAGGTT
AGTCGGTATGATTAGCTATAGATGCTCTCTTGCCTTGAGAGAAGCTAAGG
CTGCTCACCCTGGAGCTGCTGTTAAATATGGGATTACGTGGTTGCGACAG
TAGTGCCATGTGGAAAACGTTGAGGTACAGCGGAAGCTGTGCCGCGTCTC
AAATTAAAAGTGCTCTTCCTTGCCCTGCCCTGGCCCCCAGATGGCAATAC
TGCGCTGATTCTGGCAGCTGGTGTTGATGACACTGCGGGCTTGTCGTGCG
TAACAGCCCTACTGGATGCTGGAGCAGACTTGGAGGTAGGCCTGTGGTGC
AAACAGCATAAAGTGCATCAGCCATATCCCATATCACAACTGATGTGTCT
CCCCTCTTGACTCCTGCTACGGCTTCTGCACTCCACTCCACTCCATCAGG
CTAGAGGGGAAAGCAAAGCCACCGCCTTGGTAATACTACCAACTCATCTT
GGCAATACTACCAACTCATCTTGGCTTTCCTAGTACAAACAGTCACCCTG
ACATACCAGCTATCAACCCCGAGAGAGAGCGCTATGCAGTAAAACTGGAA
AGTGAAAGTTGTTGAAGAGCTTAGTTGCTTTCCACTTCCTCTTCCTCTTG
CTTGGTAACGCCTGTGCTAATACATGTCATTGTCATTACCTGCAGCATCG
AGCCGCCCGCTGGGGCCGTGCGTCAATCGTAAGGCTGCTGGCCGATCGAG
GTGCACTCATTGATGCAAGGAATAAGGTACCACCACCCTACCCTCATTAT
CATAAGAACAGGCAACCAGACCCAGATGAGATGCAATATGCTTGCTTTGC
GTAGAGCAAGCTGGGGGACGGACCAGGATAACATACTAAATGAATAGCTC
CTCTCAGCCCCCCAGTTCGACCTATCAGCCCTGCTCTAACCACTCTGCAT
CGCACAGTTTGGGGACACTCCCCTAATCCTGGCTGCCTACCACGGCAACG
AAGCTGCAGCAACCGCGCTGCTAGAGGCCGGAGCTTCCCTGCATGCCACT
TGCAATGACGGTCGATCAGCGTTGTTCTACGGGTAAGCATCAAGTTGACT
AACTAAAATATGGTAGCTACGGAGTTAGTCAAGCATGTAGCTTCTGCTGG
TGATATGTGCTGTTTAGAGTGAGCTGTTCTTTTACAGCCTGCTTAGACAA
ATGCTCATGCTTATGCTCATGGATGGAAGGGTTGTGCCGCATGACAGTGA
TAGCTGATGGCCAAGCTCATCCCGTCTTTCAACACCACCAACCTCCTCAT
ATTCACTCATGCTACCCCTTCCAGTGCGGTGCGGGGCCAATTGCCGGTGG
TGCAGACGCTGCTGCTGTTTGGTGCTGACCCAGACACACCAGATGTACAG
GGGACTAAGCCTTACCCGTTCTGTGAGGCTCAGTGGAGGATAGGTGCACA
CATGTAAGCTGCAACTCAACTGCATGCAACTCCAGCGAGGCTGGACTACT
GCTACCAGCTGTCTTTGTTAGCTGTCTGCTGCCTTGACCACCCAACAAGC
AGAGCTTCTATCTAACCTGGCCGTTTCTTCTACACATGAAAAACGCGCAG
CACCC
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Coding sequence (CDS) from alignment at C-australica_Contig_998:149..1803+

>mRNA_C-australica_Contig_998.1.1 ID=mRNA_C-australica_Contig_998.1.1|Name=mRNA_C-australica_Contig_998.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=561bp|location=Sequence derived from alignment at C-australica_Contig_998:149..1803+ (Chrysoparadoxa australica CS_1217)
GGCCGCGCCGCGTTGAGTCTTGCCGCAGAAGCAGGAGATGGTGATTCCGT
GCGGTTCTTACTCAAGGGGGGAGCGGACACAGAGCGTCGTGATCAAGATG
GCAATACTGCGCTGATTCTGGCAGCTGGTGTTGATGACACTGCGGGCTTG
TCGTGCGTAACAGCCCTACTGGATGCTGGAGCAGACTTGGAGGCTAGAGG
GGAAAGCAAAGCCACCGCCTTGCATCGAGCCGCCCGCTGGGGCCGTGCGT
CAATCGTAAGGCTGCTGGCCGATCGAGGTGCACTCATTGATGCAAGGAAT
AAGTTTGGGGACACTCCCCTAATCCTGGCTGCCTACCACGGCAACGAAGC
TGCAGCAACCGCGCTGCTAGAGGCCGGAGCTTCCCTGCATGCCACTTGCA
ATGACGGTCGATCAGCGTTGTTCTACGGTGCGGTGCGGGGCCAATTGCCG
GTGGTGCAGACGCTGCTGCTGTTTGGTGCTGACCCAGACACACCAGATGT
ACAGGGGACTAAGCCTTACCCGTTCTGTGAGGCTCAGTGGAGGATAGGTG
CACACATGTAA
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