mRNA_C-australica_Contig_9978.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9978.1.1
Unique NamemRNA_C-australica_Contig_9978.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9978.1.1 vs. uniprot
Match: UPI00191E6FA9 (OsmC family peroxiredoxin n=1 Tax=Marivirga atlantica TaxID=1548457 RepID=UPI00191E6FA9)

HSP 1 Score: 182 bits (463), Expect = 5.800e-57
Identity = 94/137 (68.61%), Postives = 113/137 (82.48%), Query Frame = 1
Query:    4 LKATRKASAQWLGSGKEGKGTLTSDSGVLDKTKYSANSRFGDEKGTNPEELIGAAHAGCFSMKLAFILQEAGVTAESIDTQAKVIFED-GIKEILLTTKVKAPGLDQAKFMEMANDAKANCPVSQVLKAEIKMDATL 411
            +K TRKA+A+W GSGKEGKGT+T+DS VLD T+Y   SRF D KGTNPEELIGAAHAGCFSMKLAF LQE G+TA+SI+T++KVI ED GI  I L+T+VKA GLDQ+KF E+A DAK NCP+S + KA I+ +ATL
Sbjct:    1 MKITRKATAEWKGSGKEGKGTVTTDSKVLDGTQYGFTSRFEDGKGTNPEELIGAAHAGCFSMKLAFNLQEEGITADSINTESKVILEDDGINTIKLSTRVKASGLDQSKFDELAKDAKENCPISALFKANIEFEATL 137          
BLAST of mRNA_C-australica_Contig_9978.1.1 vs. uniprot
Match: A0A848J2U3_9BACT (OsmC family protein n=1 Tax=Flammeovirgaceae bacterium KN852 TaxID=2729599 RepID=A0A848J2U3_9BACT)

HSP 1 Score: 182 bits (462), Expect = 7.980e-57
Identity = 93/138 (67.39%), Postives = 111/138 (80.43%), Query Frame = 1
Query:    4 LKATRKASAQWLGSGKEGKGTLTSDSGVLDKTKYSANSRFGDEKGTNPEELIGAAHAGCFSMKLAFILQEAGVTAESIDTQAKVIFEDG-IKEILLTTKVKAPGLDQAKFMEMANDAKANCPVSQVLKAEIKMDATLV 414
            +K TRKASA W G+GK GKGTLT++SGVL  TKYS ++RF DE GTNPEELIGAAH+GCFSMKLAF+LQE G  AE I T++KV  EDG IK + L TKVKAPGLD+ KF E+ NDAK NCP+S++L AEI ++A LV
Sbjct:    1 MKITRKASANWKGAGKTGKGTLTTNSGVLSDTKYSFSTRFEDEPGTNPEELIGAAHSGCFSMKLAFVLQENGTEAEDISTESKVELEDGAIKHVYLKTKVKAPGLDKDKFTELVNDAKDNCPISKLLNAEIHLEAELV 138          
BLAST of mRNA_C-australica_Contig_9978.1.1 vs. uniprot
Match: A0A1I5TN63_9BACT (Osmotically inducible protein OsmC n=1 Tax=Pseudarcicella hirudinis TaxID=1079859 RepID=A0A1I5TN63_9BACT)

HSP 1 Score: 173 bits (438), Expect = 3.590e-53
Identity = 89/138 (64.49%), Postives = 111/138 (80.43%), Query Frame = 1
Query:    4 LKATRKASAQWLGSGKEGKGTLTSDSGVLDKTKYSANSRFGDEKGTNPEELIGAAHAGCFSMKLAFILQEAGVTAESIDTQAKVIFEDG-IKEILLTTKVKAPGLDQAKFMEMANDAKANCPVSQVLKAEIKMDATLV 414
            ++  R A+AQW+G+GK+GKGTLT+ SGVL+ T+YS N+RF D  GTNPEEL+ AAHAGCFSM+LAF LQ AG TAESID+ + VI E+G I E+ LTTKVKAPGLDQAKF E+   AK NCP+S++LKA I +DA L+
Sbjct:    1 MQIKRNATAQWIGAGKDGKGTLTTQSGVLNNTQYSFNTRFEDGIGTNPEELVAAAHAGCFSMQLAFNLQGAGFTAESIDSNSVVILENGAINEVNLTTKVKAPGLDQAKFDELVTHAKENCPISKLLKATITLDAQLL 138          
BLAST of mRNA_C-australica_Contig_9978.1.1 vs. uniprot
Match: UPI0019BE8BA1 (OsmC family protein n=1 Tax=Opitutaceae bacterium TaxID=2006848 RepID=UPI0019BE8BA1)

HSP 1 Score: 169 bits (429), Expect = 8.680e-52
Identity = 88/138 (63.77%), Postives = 107/138 (77.54%), Query Frame = 1
Query:    4 LKATRKASAQWLGSGKEGKGTLTSDSGVLDKTKYSANSRFGDEKGTNPEELIGAAHAGCFSMKLAFILQEAGVTAESIDTQAKVIFEDG-IKEILLTTKVKAPGLDQAKFMEMANDAKANCPVSQVLKAEIKMDATLV 414
            ++  RKA+A+W+GSGK G G L+ DSGVL +T YS  +RF  E GTNPEELIGAAHAGCFSMKLAF+LQEAG+T +SI T A V+ EDG I +++L TKVKA GLDQAKF     DAK NCPVS++LKA I ++A LV
Sbjct:    1 MQIKRKATAEWMGSGKAGTGKLSLDSGVLKQTPYSFKTRFEGEPGTNPEELIGAAHAGCFSMKLAFVLQEAGITPDSIVTTATVVLEDGAITQVMLETKVKASGLDQAKFETYTKDAKENCPVSKLLKANISLNAELV 138          
BLAST of mRNA_C-australica_Contig_9978.1.1 vs. uniprot
Match: A0A267T9Q1_9BACT (OsmC family peroxiredoxin n=2 Tax=Flectobacillus TaxID=101 RepID=A0A267T9Q1_9BACT)

HSP 1 Score: 166 bits (419), Expect = 2.790e-50
Identity = 87/134 (64.93%), Postives = 105/134 (78.36%), Query Frame = 1
Query:   16 RKASAQWLGSGKEGKGTLTSDSGVLDKTKYSANSRFGDEKGTNPEELIGAAHAGCFSMKLAFILQEAGVTAESIDTQAKVIFEDG-IKEILLTTKVKAPGLDQAKFMEMANDAKANCPVSQVLKAEIKMDATLV 414
            R A+AQW+GSGK GKGTLTS SGVL+ T+YS N+RF D  GTNPEEL+GAAHAGCFSM+LAF LQ AG TA+ IDT ++V+ E+G I  I LTT VKA GLDQAKF E+ N AK NCP+S++  A I + ATL+
Sbjct:    5 RSANAQWIGSGKAGKGTLTSPSGVLNATQYSFNTRFEDGIGTNPEELVGAAHAGCFSMQLAFNLQGAGFTADIIDTTSEVVLENGTITTINLTTSVKAEGLDQAKFEELVNHAKENCPISKLFNATITLQATLL 138          
BLAST of mRNA_C-australica_Contig_9978.1.1 vs. uniprot
Match: A0A841EVK3_9BACT (Osmotically inducible protein OsmC n=1 Tax=Arcicella rosea TaxID=502909 RepID=A0A841EVK3_9BACT)

HSP 1 Score: 164 bits (415), Expect = 1.130e-49
Identity = 85/138 (61.59%), Postives = 106/138 (76.81%), Query Frame = 1
Query:    4 LKATRKASAQWLGSGKEGKGTLTSDSGVLDKTKYSANSRFGDEKGTNPEELIGAAHAGCFSMKLAFILQEAGVTAESIDTQAKVIFEDG-IKEILLTTKVKAPGLDQAKFMEMANDAKANCPVSQVLKAEIKMDATLV 414
            ++  R A+AQW+G+GK+GKGTLTS SGVL+ T+YS N+RF D  GTNPEEL+ AAHAGCFSM+LAF LQ AG  A+ IDT ++VI E+G I EI LTT VKA GL Q KF E+ N AK NCP+S++  A I +DATL+
Sbjct:    1 MQIKRNATAQWIGAGKDGKGTLTSPSGVLNNTQYSFNTRFEDGIGTNPEELVAAAHAGCFSMQLAFNLQGAGFVADVIDTNSQVILENGAINEIKLTTSVKAAGLTQDKFEELVNHAKVNCPISKLFNATISLDATLL 138          
BLAST of mRNA_C-australica_Contig_9978.1.1 vs. uniprot
Match: A0A4D7JR38_9BACT (OsmC family peroxiredoxin n=2 Tax=Cytophagales TaxID=768507 RepID=A0A4D7JR38_9BACT)

HSP 1 Score: 161 bits (408), Expect = 1.240e-48
Identity = 82/134 (61.19%), Postives = 104/134 (77.61%), Query Frame = 1
Query:   16 RKASAQWLGSGKEGKGTLTSDSGVLDKTKYSANSRFGDEKGTNPEELIGAAHAGCFSMKLAFILQEAGVTAESIDTQAKVIFEDG-IKEILLTTKVKAPGLDQAKFMEMANDAKANCPVSQVLKAEIKMDATLV 414
            RKA+A W G+GK GKGTL++ SGVL  + Y  +SRF D +GTNPEEL+GAAHAGCFSMKLAF+LQE    AE I+T+++VI EDG IKE+ L TKVK  GL+  KF EM NDAK NCP+S++L A+I ++A L+
Sbjct:    3 RKATAVWKGAGKTGKGTLSTQSGVLKDSNYGFSSRFEDGEGTNPEELVGAAHAGCFSMKLAFVLQENDFEAEEINTESQVILEDGAIKEVFLITKVKVAGLENDKFTEMVNDAKDNCPISKLLDAKINLEAELL 136          
BLAST of mRNA_C-australica_Contig_9978.1.1 vs. uniprot
Match: UPI001F46DCF9 (OsmC family protein n=1 Tax=Sabulilitoribacter multivorans TaxID=1304750 RepID=UPI001F46DCF9)

HSP 1 Score: 160 bits (405), Expect = 3.880e-48
Identity = 82/139 (58.99%), Postives = 110/139 (79.14%), Query Frame = 1
Query:    4 LKATRKASAQWLGSGKEGKGTLTSDSGVLDKTKYSANSRFGD-EKGTNPEELIGAAHAGCFSMKLAFILQEAGVTAESIDTQAKVIFEDG-IKEILLTTKVKAPGLDQAKFMEMANDAKANCPVSQVLKAEIKMDATLV 414
            +K TRKA AQW GSGKEGKGTLT+ S VL+ T+YS ++RF D EKGTNPEELIGAAH+GCF+M+L+F+L EAG TA ++D  A V FEDG +  +LL  K   P +D  +F+E+AN+AKA CP+S++LKA+I+++A L+
Sbjct:    1 MKFTRKAKAQWKGSGKEGKGTLTTGSKVLENTQYSFHTRFEDGEKGTNPEELIGAAHSGCFAMQLSFLLNEAGFTATTLDVDATVKFEDGNVTHVLLDLKGDVPNIDSKQFIEIANNAKAICPISKLLKADIQLEAKLL 139          
BLAST of mRNA_C-australica_Contig_9978.1.1 vs. uniprot
Match: L0G2K7_ECHVK (Peroxiredoxin, OsmC subfamily n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) TaxID=926556 RepID=L0G2K7_ECHVK)

HSP 1 Score: 158 bits (400), Expect = 2.170e-47
Identity = 83/137 (60.58%), Postives = 97/137 (70.80%), Query Frame = 1
Query:    4 LKATRKASAQWLGSGKEGKGTLTSDSGVLDKTKYSANSRFGDEKGTNPEELIGAAHAGCFSMKLAFILQEAGVTAESIDTQAKVIFEDG-IKEILLTTKVKAPGLDQAKFMEMANDAKANCPVSQVLKAEIKMDATL 411
            +K +R ASA W GSGKEGKGT+++++ VLDKT YS  SRF D KGTNPEEL+GAAHAGCFSMKL+F+L E G TAE+IDT AKV  EDG I  I L    K P +    F + A DAK NCPVS +   EI MDA L
Sbjct:    1 MKFSRNASANWKGSGKEGKGTVSTETTVLDKTPYSFKSRFEDGKGTNPEELLGAAHAGCFSMKLSFVLNEMGYTAENIDTSAKVTMEDGKISNIHLELNAKVPDISSDDFQKAAKDAKENCPVSALFNTEITMDAKL 137          
BLAST of mRNA_C-australica_Contig_9978.1.1 vs. uniprot
Match: A0A2E2IZK7_9FLAO (OsmC family peroxiredoxin n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2E2IZK7_9FLAO)

HSP 1 Score: 158 bits (399), Expect = 3.070e-47
Identity = 77/137 (56.20%), Postives = 105/137 (76.64%), Query Frame = 1
Query:    4 LKATRKASAQWLGSGKEGKGTLTSDSGVLDKTKYSANSRFGDEKGTNPEELIGAAHAGCFSMKLAFILQEAGVTAESIDTQAKVIFEDG-IKEILLTTKVKAPGLDQAKFMEMANDAKANCPVSQVLKAEIKMDATL 411
            +K TRKA AQW GSGKEGKGTL + S VL+ T YS  +RF + KGTNPEELIGAAHAGC++M+L+F+L EA  TA+++D  AKV+FEDG I  + L    K PG+++ +F ++AN AK  CP+S++L A+I+++ATL
Sbjct:    1 MKFTRKAEAQWKGSGKEGKGTLQTQSSVLENTPYSFGTRFEEAKGTNPEELIGAAHAGCYAMQLSFLLNEADYTADTLDVSAKVLFEDGSITTVSLALSAKVPGIEEKEFQQIANKAKEVCPISKLLNAKIELEATL 137          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9978.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00191E6FA95.800e-5768.61OsmC family peroxiredoxin n=1 Tax=Marivirga atlant... [more]
A0A848J2U3_9BACT7.980e-5767.39OsmC family protein n=1 Tax=Flammeovirgaceae bacte... [more]
A0A1I5TN63_9BACT3.590e-5364.49Osmotically inducible protein OsmC n=1 Tax=Pseudar... [more]
UPI0019BE8BA18.680e-5263.77OsmC family protein n=1 Tax=Opitutaceae bacterium ... [more]
A0A267T9Q1_9BACT2.790e-5064.93OsmC family peroxiredoxin n=2 Tax=Flectobacillus T... [more]
A0A841EVK3_9BACT1.130e-4961.59Osmotically inducible protein OsmC n=1 Tax=Arcicel... [more]
A0A4D7JR38_9BACT1.240e-4861.19OsmC family peroxiredoxin n=2 Tax=Cytophagales Tax... [more]
UPI001F46DCF93.880e-4858.99OsmC family protein n=1 Tax=Sabulilitoribacter mul... [more]
L0G2K7_ECHVK2.170e-4760.58Peroxiredoxin, OsmC subfamily n=1 Tax=Echinicola v... [more]
A0A2E2IZK7_9FLAO3.070e-4756.20OsmC family peroxiredoxin n=1 Tax=Flavobacteriacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9978contigC-australica_Contig_9978:270..686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog926556.Echvi_3561
Preferred nameosmC
PFAMsOsmC
Model size417
Max annot lvl976|Bacteroidetes
KEGG koko:K04063
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.55e-48
EggNOG OGsCOG1764@1|root,COG1764@2|Bacteria,4NQKB@976|Bacteroidetes,47QW3@768503|Cytophagia
DescriptionOsmC-like protein
Cds size417
COG categoryO
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588865.373439-CDS-C-australica_Contig_9978:269..6861682588865.373439-CDS-C-australica_Contig_9978:269..686Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9978 270..686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9978.1.1prot_C-australica_Contig_9978.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9978 270..686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9978.1.1

>prot_C-australica_Contig_9978.1.1 ID=prot_C-australica_Contig_9978.1.1|Name=mRNA_C-australica_Contig_9978.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=139bp
MLKATRKASAQWLGSGKEGKGTLTSDSGVLDKTKYSANSRFGDEKGTNPE
ELIGAAHAGCFSMKLAFILQEAGVTAESIDTQAKVIFEDGIKEILLTTKV
KAPGLDQAKFMEMANDAKANCPVSQVLKAEIKMDATLV*
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mRNA from alignment at C-australica_Contig_9978:270..686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9978.1.1 ID=mRNA_C-australica_Contig_9978.1.1|Name=mRNA_C-australica_Contig_9978.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=417bp|location=Sequence derived from alignment at C-australica_Contig_9978:270..686+ (Chrysoparadoxa australica CS_1217)
ATGCTAAAAGCGACAAGAAAAGCCAGTGCTCAATGGCTGGGATCAGGAAA AGAAGGAAAAGGTACGCTCACCTCTGACAGTGGGGTACTGGATAAAACTA AATACAGTGCAAACTCAAGATTTGGGGACGAGAAAGGTACCAATCCGGAG GAGTTGATCGGGGCTGCTCATGCAGGGTGTTTCTCCATGAAGCTGGCCTT TATACTTCAGGAGGCTGGTGTTACGGCAGAAAGCATCGATACACAAGCCA AGGTGATATTTGAAGATGGGATTAAGGAAATCCTGCTAACTACCAAAGTG AAGGCACCCGGTCTTGATCAGGCAAAATTTATGGAAATGGCTAATGATGC CAAAGCAAACTGTCCGGTATCGCAGGTGCTCAAAGCGGAAATCAAGATGG ATGCAACATTGGTATAA
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Coding sequence (CDS) from alignment at C-australica_Contig_9978:270..686+

>mRNA_C-australica_Contig_9978.1.1 ID=mRNA_C-australica_Contig_9978.1.1|Name=mRNA_C-australica_Contig_9978.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=417bp|location=Sequence derived from alignment at C-australica_Contig_9978:270..686+ (Chrysoparadoxa australica CS_1217)
ATGCTAAAAGCGACAAGAAAAGCCAGTGCTCAATGGCTGGGATCAGGAAA
AGAAGGAAAAGGTACGCTCACCTCTGACAGTGGGGTACTGGATAAAACTA
AATACAGTGCAAACTCAAGATTTGGGGACGAGAAAGGTACCAATCCGGAG
GAGTTGATCGGGGCTGCTCATGCAGGGTGTTTCTCCATGAAGCTGGCCTT
TATACTTCAGGAGGCTGGTGTTACGGCAGAAAGCATCGATACACAAGCCA
AGGTGATATTTGAAGATGGGATTAAGGAAATCCTGCTAACTACCAAAGTG
AAGGCACCCGGTCTTGATCAGGCAAAATTTATGGAAATGGCTAATGATGC
CAAAGCAAACTGTCCGGTATCGCAGGTGCTCAAAGCGGAAATCAAGATGG
ATGCAACATTGGTATAA
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