mRNA_C-australica_Contig_997.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_997.1.1
Unique NamemRNA_C-australica_Contig_997.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_997.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_997contigC-australica_Contig_997:282..1668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size356
Hectar predicted targeting categoryother localisation
Exons6
Cds size354
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_997.1.1prot_C-australica_Contig_997.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_997 283..1668 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588864.6333241-CDS-C-australica_Contig_997:282..4141682588864.6333241-CDS-C-australica_Contig_997:282..414Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 283..414 -
1682588864.6433723-CDS-C-australica_Contig_997:695..7421682588864.6433723-CDS-C-australica_Contig_997:695..742Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 696..742 -
1682588864.653092-CDS-C-australica_Contig_997:854..8791682588864.653092-CDS-C-australica_Contig_997:854..879Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 855..879 -
1682588864.6628718-CDS-C-australica_Contig_997:950..10281682588864.6628718-CDS-C-australica_Contig_997:950..1028Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 951..1028 -
1682588864.6727896-CDS-C-australica_Contig_997:1305..13521682588864.6727896-CDS-C-australica_Contig_997:1305..1352Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 1306..1352 -
1682588864.6825614-CDS-C-australica_Contig_997:1643..16681682588864.6825614-CDS-C-australica_Contig_997:1643..1668Chrysoparadoxa australica CS_1217CDSC-australica_Contig_997 1644..1668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_997.1.1

>prot_C-australica_Contig_997.1.1 ID=prot_C-australica_Contig_997.1.1|Name=mRNA_C-australica_Contig_997.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=118bp
DLALADLNGDGRLDLTAACQDSDNVAVLYYDTDGSRFSSATLYQACTSPE
SVEAADLDGDGNTDIAVACSGSDEVTVLHSNGIFRTVFDSASNTTTSSTF
NTTTTIELSHHCSEPIDL
back to top

mRNA from alignment at C-australica_Contig_997:282..1668-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_997.1.1 ID=mRNA_C-australica_Contig_997.1.1|Name=mRNA_C-australica_Contig_997.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1387bp|location=Sequence derived from alignment at C-australica_Contig_997:282..1668- (Chrysoparadoxa australica CS_1217)
GACCTGGCACTGGCTGACCTAAACGGTACGTATTTGTTAAAGCAATGGGA
TTGACTAGATAGGGCCTCAACCCAACCTTCTCACTGATTATCTTAACACT
CCCTGAGGCATGCCGGTCCTCTGTCTTGTGCATTGCATCCGGCCACTGCC
AATGCCTCTTCCCATGTGTGATTACGTAACCCACTCGTGTGCTGTACAAG
TAGTATATGTACGAGTAGCCTCTAAAGCATATAATTACCCACTCTCTCAT
TATGGCTGGATGATGCTAAGGCCCCTATGTTATGGACAACAGCCTTGACT
CTTTGATCGTTTTCAGGTGACGGCAGGCTGGATTTGACGGCTGCATGCCA
GGACTCAGATAATGTAAGTGGCTTTGTGTCAATAGCTCAATAATAGTGCA
TCAGCTTACTTGAGGGACAAGTCCAGTGTGAATAGCCGAGTCATGTGCAG
TGATCTCAGTGCTCAAGCTCGACCACTTGCGATTCATAGCAAGTTGTGCG
CATGGTAGTATGAGTGGGGTAGGCATGCCAAACATCTTTAGATGCTTGGC
TCCAGCCAGATGTGGCTTAAAGGCCTGGAGGGCCTTGAGGGCCTTGAATT
TATTGGTGTAGTGGAGTAACTAAGGCATCATTTCTGGCAGGTTGCTGTGC
TGTACTACGATACTGATGGGAGCAGATTCAGCTCTGCAACTCTCTACCAG
GCGTGCACGTCTCCAGAGGTACCGCTCCTTTACTTTTGTGACTCCTAGCC
TTCATCACATGCTAATCGTGCTCTTGACCTCCTTCTCAGTCAGTGGAGGC
GGCGGACCTTGACGGTAATGCTGAGTTCATAGGGGAGCTGCCGTTAGGAT
GAGTGAGAGGAATTCAACACTAGCTGTCACTCGAATACTCAGCGCGATAC
CTTCCCCTCCCGGCATACTCCTGTAGGTGATGGAAACACTGACATTGCCG
TGGCGTGCTCCGGATCAGACGAGGTAACTCATTGCAACTCATTAGAACTC
ATTAGCTCCTCTTTGCCATATCCTTCTCATGCCTGATGCCCGTTGCGCGT
GACCTGCCACGCTCTGCAGCCACTTTCCAACAAACATGGCATGGGTCAGC
TCTCGTGCACCTCTCACGAAATGCTCAGGAGCTCAACCCCTCAGCCCTCA
CTTACCAACTCATAGAGAGTTTAATTTTGAAGAACGAACTTAAAACTTGT
TCAAAATTGTTATTTCACTCACCTCACCGCGCTGATTCTACTGACTGCCA
CCAGGTGACGGTGCTTCATAGCAACGGCATCTTCAGGACCGTCTTTGACA
GCGCCTCCAACACCACAACCAGCAGCACCTTCAACACCACCACCACCATC
GAGCTCAGCCATCACTGCAGCGAGCCCATCGACCTCC
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_997:282..1668-

>mRNA_C-australica_Contig_997.1.1 ID=mRNA_C-australica_Contig_997.1.1|Name=mRNA_C-australica_Contig_997.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=354bp|location=Sequence derived from alignment at C-australica_Contig_997:282..1668- (Chrysoparadoxa australica CS_1217)
GACCTGGCACTGGCTGACCTAAACGGTGACGGCAGGCTGGATTTGACGGC
TGCATGCCAGGACTCAGATAATGTTGCTGTGCTGTACTACGATACTGATG
GGAGCAGATTCAGCTCTGCAACTCTCTACCAGGCGTGCACGTCTCCAGAG
TCAGTGGAGGCGGCGGACCTTGACGGTGATGGAAACACTGACATTGCCGT
GGCGTGCTCCGGATCAGACGAGGTGACGGTGCTTCATAGCAACGGCATCT
TCAGGACCGTCTTTGACAGCGCCTCCAACACCACAACCAGCAGCACCTTC
AACACCACCACCACCATCGAGCTCAGCCATCACTGCAGCGAGCCCATCGA
CCTC
back to top