mRNA_C-australica_Contig_9962.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9962.1.1
Unique NamemRNA_C-australica_Contig_9962.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9962.1.1 vs. uniprot
Match: A3UK66_9PROT (Probable membrane transporter protein n=3 Tax=Oceanicaulis TaxID=153232 RepID=A3UK66_9PROT)

HSP 1 Score: 266 bits (681), Expect = 5.840e-88
Identity = 140/155 (90.32%), Postives = 144/155 (92.90%), Query Frame = 1
Query:    1 MDASLIPFILTLLAVGAFAGLIAGLFGIGGGIVMVPALYYVLTALGYEAHAMHAAVGTSLMVIVTTSLRSVAAHAQKGAVDFAVLKGWTPFIVIGALLGSAVADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLADQLPGHPWKALLGGVIGVL 465
            MDASLIPFIL LLAVGAFAGLIAGLFGIGGGI+MVPALYYVLT LGYEAHAMHAAVGTSLMVIV TSLRSVAAHAQKGAVDF VLK WTPFIV+GALLGSAVADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLAD LPG P K +LG  IG+L
Sbjct:    1 MDASLIPFILALLAVGAFAGLIAGLFGIGGGIIMVPALYYVLTGLGYEAHAMHAAVGTSLMVIVATSLRSVAAHAQKGAVDFKVLKTWTPFIVLGALLGSAVADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLADDLPGQPMKTVLGMTIGIL 155          
BLAST of mRNA_C-australica_Contig_9962.1.1 vs. uniprot
Match: A0A2U2BSR8_9PROT (Probable membrane transporter protein n=1 Tax=Marinicauda salina TaxID=2135793 RepID=A0A2U2BSR8_9PROT)

HSP 1 Score: 235 bits (600), Expect = 1.130e-75
Identity = 120/152 (78.95%), Postives = 134/152 (88.16%), Query Frame = 1
Query:   10 SLIPFILTLLAVGAFAGLIAGLFGIGGGIVMVPALYYVLTALGYEAHAMHAAVGTSLMVIVTTSLRSVAAHAQKGAVDFAVLKGWTPFIVIGALLGSAVADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLADQLPGHPWKALLGGVIGVL 465
            S +PF+  L+AVGAFAGLIAGLFGIGGG+VMVPALYY   ALGY+ HAMHAAVGTSL VIV TSLRSVAAHA++GAVDF VL+ WTP+IV+GAL GSA+ADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLAD LPG P + +LG  IG+L
Sbjct:    3 SYLPFLAGLIAVGAFAGLIAGLFGIGGGVVMVPALYYTFNALGYDGHAMHAAVGTSLAVIVATSLRSVAAHAKRGAVDFHVLRTWTPWIVVGALAGSAIADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLADDLPGLPLRGVLGAFIGIL 154          
BLAST of mRNA_C-australica_Contig_9962.1.1 vs. uniprot
Match: A0A4V3RYU7_9PROT (Probable membrane transporter protein n=2 Tax=Marinicauda pacifica TaxID=1133559 RepID=A0A4V3RYU7_9PROT)

HSP 1 Score: 217 bits (552), Expect = 1.960e-68
Identity = 112/144 (77.78%), Postives = 123/144 (85.42%), Query Frame = 1
Query:   34 LLAVGAFAGLIAGLFGIGGGIVMVPALYYVLTALGYEAHAMHAAVGTSLMVIVTTSLRSVAAHAQKGAVDFAVLKGWTPFIVIGALLGSAVADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLADQLPGHPWKALLGGVIGVL 465
            LLA GAFAGLIAGLFGIGGG+VMVPALYY L+ALGYE HAMHAAVGTSL VIV+TSLRSVAAHA +GAVDF VL+ WTP+IV+GAL GS +ADLAPG  LT LFG VALLLSAQFFFGRPDWKLA  +PG P   +LG +IG L
Sbjct:    8 LLATGAFAGLIAGLFGIGGGVVMVPALYYTLSALGYEDHAMHAAVGTSLTVIVSTSLRSVAAHAGRGAVDFDVLRRWTPWIVLGALTGSVIADLAPGEVLTALFGIVALLLSAQFFFGRPDWKLAQDMPGLPMSGVLGTLIGTL 151          
BLAST of mRNA_C-australica_Contig_9962.1.1 vs. uniprot
Match: A0A4S2H2Y2_9PROT (Probable membrane transporter protein n=1 Tax=Marinicauda algicola TaxID=2029849 RepID=A0A4S2H2Y2_9PROT)

HSP 1 Score: 216 bits (551), Expect = 3.150e-68
Identity = 114/155 (73.55%), Postives = 126/155 (81.29%), Query Frame = 1
Query:    1 MDASLIPFILTLLAVGAFAGLIAGLFGIGGGIVMVPALYYVLTALGYEAHAMHAAVGTSLMVIVTTSLRSVAAHAQKGAVDFAVLKGWTPFIVIGALLGSAVADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLADQLPGHPWKALLGGVIGVL 465
            M   L  F+  LLA GAFAGLIAGLFGIGGG+VMVPALY+  TALGYE HAMHAAVGTSL VIV TSLRSVAAHA++GAVD  VLK WTP+IVIGAL GS +AD  P R LTGLFGAVAL+LSAQFFFGRPDWKLA+ +PG P   +LG  IG+L
Sbjct:    1 MSGELWLFLAGLLATGAFAGLIAGLFGIGGGVVMVPALYFTFTALGYETHAMHAAVGTSLTVIVATSLRSVAAHARRGAVDGHVLKTWTPWIVIGALAGSVLADFIPSRGLTGLFGAVALVLSAQFFFGRPDWKLAEAMPGLPLSGVLGAFIGIL 155          
BLAST of mRNA_C-australica_Contig_9962.1.1 vs. uniprot
Match: UPI00038128EE (sulfite exporter TauE/SafE family protein n=1 Tax=Woodsholea maritima TaxID=240237 RepID=UPI00038128EE)

HSP 1 Score: 207 bits (527), Expect = 1.280e-64
Identity = 107/147 (72.79%), Postives = 125/147 (85.03%), Query Frame = 1
Query:   25 ILTLLAVGAFAGLIAGLFGIGGGIVMVPALYYVLTALGYEAHAMHAAVGTSLMVIVTTSLRSVAAHAQKGAVDFAVLKGWTPFIVIGALLGSAVADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLADQLPGHPWKALLGGVIGVL 465
            I+ LL  GA AGLIAGLFGIGGGI+MVPALYYV +ALG++  AMHAAVGTSL VI+ TSLRSV+AHA++GAVDFA++K W P+I+IGAL+GSA+A LAPG  LTGLFG VAL+LSAQFFFGRPDWKLA+ LPG P  A LG +IG L
Sbjct:    8 IIALLITGAVAGLIAGLFGIGGGIIMVPALYYVFSALGFDDTAMHAAVGTSLAVIIATSLRSVSAHAKRGAVDFALIKVWAPWIIIGALIGSALAGLAPGIVLTGLFGVVALILSAQFFFGRPDWKLAEDLPGFPLNAGLGALIGGL 154          
BLAST of mRNA_C-australica_Contig_9962.1.1 vs. uniprot
Match: A0A5M6ZCS8_9PROT (Probable membrane transporter protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A5M6ZCS8_9PROT)

HSP 1 Score: 202 bits (513), Expect = 1.740e-62
Identity = 106/148 (71.62%), Postives = 118/148 (79.73%), Query Frame = 1
Query:   22 FILTLLAVGAFAGLIAGLFGIGGGIVMVPALYYVLTALGYEAHAMHAAVGTSLMVIVTTSLRSVAAHAQKGAVDFAVLKGWTPFIVIGALLGSAVADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLADQLPGHPWKALLGGVIGVL 465
            FIL LLAVGAFAGLIAGLFGIGGG+VMVPA+YY L  LGY  HAMHAAVGTSL VIV TSLRSVAAHA + AVDF VL+ WTP+IV+GAL GSA+A   P R L  +F  +AL+LS QFFFGR DW+L D LPG PW+A L G IGVL
Sbjct:    8 FILALLAVGAFAGLIAGLFGIGGGVVMVPAMYYTLKLLGYPDHAMHAAVGTSLAVIVVTSLRSVAAHAGRDAVDFKVLRQWTPWIVLGALAGSALAGAIPTRGLVFIFAIMALILSLQFFFGRGDWRLGDDLPGQPWRAGLAGFIGVL 155          
BLAST of mRNA_C-australica_Contig_9962.1.1 vs. uniprot
Match: A0A3T0EAU1_9PROT (Probable membrane transporter protein n=4 Tax=Maricaulaceae TaxID=2800061 RepID=A0A3T0EAU1_9PROT)

HSP 1 Score: 201 bits (510), Expect = 4.810e-62
Identity = 103/150 (68.67%), Postives = 119/150 (79.33%), Query Frame = 1
Query:   16 IPFILTLLAVGAFAGLIAGLFGIGGGIVMVPALYYVLTALGYEAHAMHAAVGTSLMVIVTTSLRSVAAHAQKGAVDFAVLKGWTPFIVIGALLGSAVADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLADQLPGHPWKALLGGVIGVL 465
            I ++LTLLAVGAFAGLIAGLFGIGGG+VMVPA+YY L  LGY  HAMHAAVGTSL VIV TS RSV AHA++GAVDF +LK W P+IV+GAL GSA+A   P R L  +F   AL+LS QFFFGR DWKL D LPG P++ALL G IG++
Sbjct:    5 IVYLLTLLAVGAFAGLIAGLFGIGGGVVMVPAMYYTLVFLGYPEHAMHAAVGTSLAVIVITSARSVMAHAKRGAVDFDILKKWCPWIVLGALAGSAIAGAIPTRGLVFIFAITALVLSLQFFFGRADWKLGDDLPGQPFRALLAGTIGIM 154          
BLAST of mRNA_C-australica_Contig_9962.1.1 vs. uniprot
Match: A0A1G9Q0X2_9PROT (Probable membrane transporter protein n=1 Tax=Maricaulis salignorans TaxID=144026 RepID=A0A1G9Q0X2_9PROT)

HSP 1 Score: 195 bits (495), Expect = 9.230e-60
Identity = 99/143 (69.23%), Postives = 118/143 (82.52%), Query Frame = 1
Query:   40 AVGAFAGLIAGLFGIGGGIVMVPALYYVLTALGYEAHA-MHAAVGTSLMVIVTTSLRSVAAHAQKGAVDFAVLKGWTPFIVIGALLGSAVADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLADQLPGHPWKALLGGVIGVL 465
            A GAFAGL+AGLFGIGGG+VMVPA+YY L+ALGY+    MH AVGTSL VIV TS+RS++AHA++GAVDF VL+ W P+IV G LLGS +AD   GR LTGLFG +ALLLS QFFFGRPDWKL D+LPG P +A LGG+IG++
Sbjct:   13 ATGAFAGLVAGLFGIGGGVVMVPAMYYALSALGYQDDKLMHVAVGTSLAVIVATSMRSLSAHAKRGAVDFQVLRSWGPWIVGGTLLGSVIADQVSGRVLTGLFGGMALLLSLQFFFGRPDWKLRDELPGGPARAGLGGLIGIM 155          
BLAST of mRNA_C-australica_Contig_9962.1.1 vs. uniprot
Match: Q0AR39_MARMM (Probable membrane transporter protein n=3 Tax=Maricaulis TaxID=74317 RepID=Q0AR39_MARMM)

HSP 1 Score: 190 bits (483), Expect = 6.200e-58
Identity = 98/148 (66.22%), Postives = 117/148 (79.05%), Query Frame = 1
Query:   25 ILTLLAVGAFAGLIAGLFGIGGGIVMVPALYYVLTALGYE-AHAMHAAVGTSLMVIVTTSLRSVAAHAQKGAVDFAVLKGWTPFIVIGALLGSAVADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLADQLPGHPWKALLGGVIGVL 465
            ++ + A GAFAGLIAGLFGIGGGIVMVPA+Y+    LGY+    M  AVGTSL VI+ TS RSVAAHA++ AVDFAVL+GW P+IVIG L+GS +A L PG  LTGLFG  A++LSAQFFFGRPDW+LAD LPG P +  LGG+IG+L
Sbjct:    8 VVAMAATGAFAGLIAGLFGIGGGIVMVPAMYFAFQFLGYDDPRIMQVAVGTSLAVIIATSARSVAAHAKRDAVDFAVLRGWAPWIVIGTLVGSRIAHLLPGNFLTGLFGVTAMILSAQFFFGRPDWRLADDLPGGPLRWGLGGLIGIL 155          
BLAST of mRNA_C-australica_Contig_9962.1.1 vs. uniprot
Match: A0A2D7Y2S7_9PROT (Probable membrane transporter protein n=3 Tax=Maricaulis TaxID=74317 RepID=A0A2D7Y2S7_9PROT)

HSP 1 Score: 189 bits (481), Expect = 1.210e-57
Identity = 98/148 (66.22%), Postives = 116/148 (78.38%), Query Frame = 1
Query:   25 ILTLLAVGAFAGLIAGLFGIGGGIVMVPALYYVLTALGYE-AHAMHAAVGTSLMVIVTTSLRSVAAHAQKGAVDFAVLKGWTPFIVIGALLGSAVADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLADQLPGHPWKALLGGVIGVL 465
            +L + A GAFAGLIAGLFGIGGGIVMVPA+YY    LGY+    M  AVGTSL VI+ TSLRSV AHA++GAVDF VLKGW  +I+IG L+GS +A L PG  LTG+FG +A+LLSAQFFFGRPDW LAD +P  P + LLGG+IG+L
Sbjct:    8 VLAMAATGAFAGLIAGLFGIGGGIVMVPAMYYAFQFLGYDDPRIMQIAVGTSLAVIIATSLRSVNAHAKRGAVDFDVLKGWALWIIIGTLIGSRIAHLIPGYILTGIFGGMAILLSAQFFFGRPDWTLADDMPSGPLRWLLGGIIGIL 155          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9962.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A3UK66_9PROT5.840e-8890.32Probable membrane transporter protein n=3 Tax=Ocea... [more]
A0A2U2BSR8_9PROT1.130e-7578.95Probable membrane transporter protein n=1 Tax=Mari... [more]
A0A4V3RYU7_9PROT1.960e-6877.78Probable membrane transporter protein n=2 Tax=Mari... [more]
A0A4S2H2Y2_9PROT3.150e-6873.55Probable membrane transporter protein n=1 Tax=Mari... [more]
UPI00038128EE1.280e-6472.79sulfite exporter TauE/SafE family protein n=1 Tax=... [more]
A0A5M6ZCS8_9PROT1.740e-6271.62Probable membrane transporter protein n=2 Tax=Prot... [more]
A0A3T0EAU1_9PROT4.810e-6268.67Probable membrane transporter protein n=4 Tax=Mari... [more]
A0A1G9Q0X2_9PROT9.230e-6069.23Probable membrane transporter protein n=1 Tax=Mari... [more]
Q0AR39_MARMM6.200e-5866.22Probable membrane transporter protein n=3 Tax=Mari... [more]
A0A2D7Y2S7_9PROT1.210e-5766.22Probable membrane transporter protein n=3 Tax=Mari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9962contigC-australica_Contig_9962:382..846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1122613.ATUP01000001_gene2368
PFAMsTauE
Model size465
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07090
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.66e-100
EggNOG OGsCOG0730@1|root,COG0730@2|Bacteria,1R3V4@1224|Proteobacteria,2TRYX@28211|Alphaproteobacteria,43WHJ@69657|Hyphomonadaceae
Descriptionmembrane transporter protein
Cds size465
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588864.494188-CDS-C-australica_Contig_9962:381..8461682588864.494188-CDS-C-australica_Contig_9962:381..846Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9962 382..846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9962.1.1prot_C-australica_Contig_9962.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9962 382..846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9962.1.1

>prot_C-australica_Contig_9962.1.1 ID=prot_C-australica_Contig_9962.1.1|Name=mRNA_C-australica_Contig_9962.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=155bp
MDASLIPFILTLLAVGAFAGLIAGLFGIGGGIVMVPALYYVLTALGYEAH
AMHAAVGTSLMVIVTTSLRSVAAHAQKGAVDFAVLKGWTPFIVIGALLGS
AVADLAPGRALTGLFGAVALLLSAQFFFGRPDWKLADQLPGHPWKALLGG
VIGVL
back to top

mRNA from alignment at C-australica_Contig_9962:382..846+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9962.1.1 ID=mRNA_C-australica_Contig_9962.1.1|Name=mRNA_C-australica_Contig_9962.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=465bp|location=Sequence derived from alignment at C-australica_Contig_9962:382..846+ (Chrysoparadoxa australica CS_1217)
ATGGACGCCTCGCTGATCCCCTTCATCCTGACCTTGCTGGCCGTGGGCGC GTTCGCCGGCCTGATCGCGGGGTTGTTCGGTATTGGCGGGGGCATCGTGA TGGTGCCGGCGCTGTATTATGTGCTGACCGCGCTGGGGTATGAGGCGCAC GCCATGCACGCGGCGGTGGGCACCTCGCTGATGGTGATCGTCACCACCTC CCTGCGTTCGGTCGCCGCCCACGCCCAGAAAGGGGCGGTGGATTTCGCGG TGCTCAAGGGCTGGACGCCCTTCATCGTCATTGGCGCCTTGCTCGGATCC GCCGTGGCCGATCTTGCGCCGGGGCGGGCGCTGACGGGATTGTTCGGCGC CGTGGCGCTCTTGCTGTCCGCGCAATTCTTCTTCGGGCGTCCGGACTGGA AGCTCGCGGACCAGCTGCCCGGTCATCCCTGGAAGGCGCTGCTGGGCGGC GTGATCGGCGTGTTG
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_9962:382..846+

>mRNA_C-australica_Contig_9962.1.1 ID=mRNA_C-australica_Contig_9962.1.1|Name=mRNA_C-australica_Contig_9962.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=465bp|location=Sequence derived from alignment at C-australica_Contig_9962:382..846+ (Chrysoparadoxa australica CS_1217)
ATGGACGCCTCGCTGATCCCCTTCATCCTGACCTTGCTGGCCGTGGGCGC
GTTCGCCGGCCTGATCGCGGGGTTGTTCGGTATTGGCGGGGGCATCGTGA
TGGTGCCGGCGCTGTATTATGTGCTGACCGCGCTGGGGTATGAGGCGCAC
GCCATGCACGCGGCGGTGGGCACCTCGCTGATGGTGATCGTCACCACCTC
CCTGCGTTCGGTCGCCGCCCACGCCCAGAAAGGGGCGGTGGATTTCGCGG
TGCTCAAGGGCTGGACGCCCTTCATCGTCATTGGCGCCTTGCTCGGATCC
GCCGTGGCCGATCTTGCGCCGGGGCGGGCGCTGACGGGATTGTTCGGCGC
CGTGGCGCTCTTGCTGTCCGCGCAATTCTTCTTCGGGCGTCCGGACTGGA
AGCTCGCGGACCAGCTGCCCGGTCATCCCTGGAAGGCGCTGCTGGGCGGC
GTGATCGGCGTGTTG
back to top