mRNA_C-australica_Contig_992.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_992.1.1
Unique NamemRNA_C-australica_Contig_992.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_992.1.1 vs. uniprot
Match: A0A835ZF88_9STRA (FYVE-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF88_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.410e-27
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  310 HWMPDSMCRACSDCEQPFNMFRRRHHCRVCGQVFCQACSSSFIDGRDFAIAGSVRVCHSCHDK 498
            +WMPD +CR C +C  PF MFRRRHHCRVCGQVFCQ CS   +DG+DF IAGS+R C  C+D+
Sbjct:    5 YWMPDKICRVCYECGAPFTMFRRRHHCRVCGQVFCQNCSGYSVDGKDFGIAGSIRTCRMCYDQ 67          
BLAST of mRNA_C-australica_Contig_992.1.1 vs. uniprot
Match: A0A7S4DP41_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DP41_9EUKA)

HSP 1 Score: 108 bits (271), Expect = 3.930e-26
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  289 LGAG-------TTRHWMPDSMCRACSDCEQPFNMFRRRHHCRVCGQVFCQACSSSFIDGRDFAIAGSVRVCHSCHDKHMQRLKKGGHQ 531
            LGAG       + +HWMPD  C+ C DCE PF +FRRRHHCR+CGQVFC +CSS  +DG  + I G+VRVC+ C D+ + R+    HQ
Sbjct:  123 LGAGARDEPLLSKKHWMPDRTCKVCYDCEMPFTLFRRRHHCRICGQVFCNSCSSHMVDGALYNIPGNVRVCNYCFDQQLWRIGDKAHQ 210          
BLAST of mRNA_C-australica_Contig_992.1.1 vs. uniprot
Match: A0A6H5K2Y0_9PHAE (FYVE-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y0_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.250e-26
Identity = 61/162 (37.65%), Postives = 80/162 (49.38%), Query Frame = 1
Query:  127 PCIDRMTRFPVPAIGRQRDVYALDWSGSDGEGEDERDGDVSRQGTGSEQSQ-HPTLGAGTTR-------------------------HWMPDSMCRACSDCEQPFNMFRRRHHCRVCGQVFCQACSSSFIDGRDFAIAGSVRVCHSCH----DKHMQRLKKG 522
            P  + +T FP P   R+R +   DW GS  E  DE+    SR+  G+  S+ +  +  G  R                         HWMPD MCR C  C  PF MFRRRHHCRVCGQ+FC  CSS+ +D R   I  SVR+C+ C     D  ++R++ G
Sbjct:   11 PADNALTAFPTPGDPRRRPLVQFDWDGS--ENVDEKQAARSRRRKGAAASRGYRGISEGVAREGGGAXXXXXXXXGVPGVITLNPKMHWMPDRMCRVCYGCNSPFTMFRRRHHCRVCGQIFCHTCSSNHVDARALGINASVRMCNPCAEQLPDSRVRRIEAG 170          
BLAST of mRNA_C-australica_Contig_992.1.1 vs. uniprot
Match: A0A7S2GIE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIE7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.310e-25
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  202 SGSDGEGEDERDGDVSRQGTGSEQSQHPTLGAGTTRHWMPDSMCRACSDCEQPFNMFRRRHHCRVCGQVFCQACSSSFIDGRDFAIAGSVRVCHSCHDK 498
            +G  G GE   D D SR  T S+++          ++WMPD +C+ C DCE PFNM RRRHHCR+CGQVFC +CSS F++G+   I G+VR C  CHD+
Sbjct:    6 TGDTGAGEKYGD-DTSRDDTSSDKN----------KYWMPDRLCKVCYDCELPFNMLRRRHHCRMCGQVFCHSCSSYFVEGKAAGIPGTVRACKMCHDQ 93          
BLAST of mRNA_C-australica_Contig_992.1.1 vs. uniprot
Match: D7G3Z3_ECTSI (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z3_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 4.430e-25
Identity = 61/151 (40.40%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  139 RMTRFPVPAIGRQRDVYALDWSGSDGEGEDERDGDVSRQGTGSEQSQ-HPTLGAGTTR------------------HWMPDSMCRACSDCEQPFNMFRRRHHCRVCGQVFCQACSSSFIDGRDFAIAGSVRVCHSCH----DKHMQRLKKG 522
            ++T FP P   R+R +   DW GS  E  DE+    SR+  G+  S+ +  +  G  R                  HWMPD MCR C  C  PF MFRRRHHCRVCGQ+FC  CSS+ +D R   I  SVR+C+ C     D  ++RL+ G
Sbjct:   88 KLTAFPTPGDPRRRPLVQFDWDGS--ENVDEKRAARSRRRKGAAASRGYRGISEGVAREGGGGGGVPGVITLNPKMHWMPDRMCRVCYGCNSPFTMFRRRHHCRVCGQIFCHTCSSNHVDARALGINASVRMCNPCAEQLPDSRLRRLEAG 236          
BLAST of mRNA_C-australica_Contig_992.1.1 vs. uniprot
Match: A0A8J2X5N4_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5N4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.410e-23
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  310 HWMPDSMCRACSDCEQPFNMFRRRHHCRVCGQVFCQACSSSFIDGRDFAIAGSVRVCHSCHDKH 501
            +WMPD +CR C +CE PFNMFRRRHHCR+CGQVFC  CSS  IDGR   + G VRVC +CH  H
Sbjct:   74 YWMPDRLCRTCYECEMPFNMFRRRHHCRLCGQVFCHKCSSYLIDGRLVLLTGMVRVCTTCHQAH 137          
BLAST of mRNA_C-australica_Contig_992.1.1 vs. uniprot
Match: A0A482SVF7_9ARCH (FYVE-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVF7_9ARCH)

HSP 1 Score: 99.4 bits (246), Expect = 5.840e-22
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  313 WMPDSMCRACSDCEQPFNMFRRRHHCRVCGQVFCQACSSSFIDGRDFAIAGSVRVCHSCHDKHMQRLKK 519
            WMPD  C+ C  CE+ F MFRRRHHCR+CGQVFC  CS++FI+G    + GS+RVC  C+D+ M + +K
Sbjct:   31 WMPDKYCKVCYGCEESFTMFRRRHHCRLCGQVFCNNCSNNFIEGSVLNMTGSIRVCRPCYDQSMDKTEK 99          
BLAST of mRNA_C-australica_Contig_992.1.1 vs. uniprot
Match: A0A7S3NNB9_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNB9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.120e-22
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  310 HWMPDSMCRACSDCEQPFNMFRRRHHCRVCGQVFCQACSSSFIDGRDFAIAGSVRVCHSCHDK 498
            +WMPD +CR C +CE PFN+FRR+HHCR CGQ+FC +CSS F+DGR F + G VR C  CH++
Sbjct:  173 YWMPDRLCRMCYECELPFNVFRRKHHCRFCGQIFCHSCSSYFVDGRLFLLIGMVRACRLCHNQ 235          
BLAST of mRNA_C-australica_Contig_992.1.1 vs. uniprot
Match: M4BZJ9_HYAAE (FYVE-type domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZJ9_HYAAE)

HSP 1 Score: 96.7 bits (239), Expect = 5.160e-20
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  283 PTLGAGTTRHWMPDSMCRACSDCEQPFNMFRRRHHCRVCGQVFCQACSSSFIDGRDFAIAGSVRVCHSC 489
            P+L   + ++WMPD +C+ C DC   F++FRRRHHCR+CGQ+FC  CS+SFIDG      G++RVC  C
Sbjct:   61 PSLTTVSNQYWMPDRLCKVCYDCSAAFSLFRRRHHCRLCGQIFCHECSNSFIDGTSHGFPGAIRVCKFC 129          
BLAST of mRNA_C-australica_Contig_992.1.1 vs. uniprot
Match: A0A2P4XC16_9STRA (FYVE-type domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XC16_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.420e-19
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  307 RHWMPDSMCRACSDCEQPFNMFRRRHHCRVCGQVFCQACSSSFIDGRDFAIAGSVRVCHSC 489
            ++WMPD +C+ C DC   F++FRRRHHCR+CGQ+FC  CS+ FIDG      G VRVC  C
Sbjct:    6 QYWMPDHLCKVCYDCSAAFSLFRRRHHCRLCGQIFCHECSNQFIDGTPHGFPGVVRVCKFC 66          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_992.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZF88_9STRA4.410e-2765.08FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A7S4DP41_9EUKA3.930e-2652.27Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A6H5K2Y0_9PHAE4.250e-2637.65FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A7S2GIE7_9STRA4.310e-2549.49Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
D7G3Z3_ECTSI4.430e-2540.401-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A8J2X5N4_9STRA4.410e-2365.631-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A482SVF7_9ARCH5.840e-2255.07FYVE-type domain-containing protein n=1 Tax=archae... [more]
A0A7S3NNB9_9STRA7.120e-2260.321-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
M4BZJ9_HYAAE5.160e-2052.17FYVE-type domain-containing protein n=1 Tax=Hyalop... [more]
A0A2P4XC16_9STRA3.420e-1955.74FYVE-type domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_992contigC-australica_Contig_992:175..1175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3Z3
PFAMsCpn60_TCP1,FYVE,PIP5K
Model size532
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00921
KEGG ReactionR05802,R10951
KEGG Pathwayko00562,ko04070,ko04145,ko04810,map00562,map04070,map04145,map04810
Hectar predicted targeting categoryother localisation
Exons5
Evalue7.27e-26
EggNOG OGsCOG5253@1|root,KOG0230@2759|Eukaryota
EC2.7.1.150
Description1-phosphatidylinositol-3-phosphate 5-kinase activity
Cds size531
COG categoryT
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588860.2004654-CDS-C-australica_Contig_992:174..3251682588860.2004654-CDS-C-australica_Contig_992:174..325Chrysoparadoxa australica CS_1217CDSC-australica_Contig_992 175..325 -
1682588860.2122014-CDS-C-australica_Contig_992:461..6251682588860.2122014-CDS-C-australica_Contig_992:461..625Chrysoparadoxa australica CS_1217CDSC-australica_Contig_992 462..625 -
1682588860.221761-CDS-C-australica_Contig_992:798..8741682588860.221761-CDS-C-australica_Contig_992:798..874Chrysoparadoxa australica CS_1217CDSC-australica_Contig_992 799..874 -
1682588860.234476-CDS-C-australica_Contig_992:960..10161682588860.234476-CDS-C-australica_Contig_992:960..1016Chrysoparadoxa australica CS_1217CDSC-australica_Contig_992 961..1016 -
1682588860.2556043-CDS-C-australica_Contig_992:1091..11751682588860.2556043-CDS-C-australica_Contig_992:1091..1175Chrysoparadoxa australica CS_1217CDSC-australica_Contig_992 1092..1175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_992.1.1prot_C-australica_Contig_992.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_992 175..1175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_992.1.1

>prot_C-australica_Contig_992.1.1 ID=prot_C-australica_Contig_992.1.1|Name=mRNA_C-australica_Contig_992.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=177bp
MLYYAKQNEPPSSPLSPAGTVDRGKERQAELEQFAQTVEFPSPCIDRMTR
FPVPAIGRQRDVYALDWSGSDGEGEDERDGDVSRQGTGSEQSQHPTLGAG
TTRHWMPDSMCRACSDCEQPFNMFRRRHHCRVCGQVFCQACSSSFIDGRD
FAIAGSVRVCHSCHDKHMQRLKKGGHQ
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mRNA from alignment at C-australica_Contig_992:175..1175-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_992.1.1 ID=mRNA_C-australica_Contig_992.1.1|Name=mRNA_C-australica_Contig_992.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1001bp|location=Sequence derived from alignment at C-australica_Contig_992:175..1175- (Chrysoparadoxa australica CS_1217)
ATGCTGTATTATGCCAAGCAAAATGAGCCCCCTAGCTCCCCCCTCTCTCC CGCAGGCACAGTGGACAGGGGAAAGGAGAGACAGGTGAGAGAGAGTATAA GAGGAGGAACCTCAGCCCACCCACAATCCCGGAACCTGATCATTTGTCCC TGTGCAAAGGCGGAGCTTGAGCAGTTTGCCCAAACAGTGGAGTTCCCATC TCCATGCATCGACAGGTCTGGGCTAGTTCCTCCCTTTCTTGCCCTATCCT ACCCCTTCCTCCTCTCCTCTCCACTCACCGAATCCATTCCCCCCACCCAA GGATGACTCGGTTCCCTGTCCCTGCTATTGGCCGGCAGAGGGATGTCTAT GCATTAGACTGGTCTGGCTCGGATGGCGTAAGTGACCTCCTCACCTCTCA TCTCATCTCAGCATACCAGTTCGATTCTTTGATAATCCAGTCAGCTGATA CCTACACAACAAACCGTACTGGGAGACGAACCTCACTCCCATGCCCAAGC AATAGCCATTAGCTAAAGCCTCATGACAAACACAAACTCGCCCTCATCAG GAGGGCGAGGACGAGCGTGACGGTGACGTCTCTAGGCAAGGCACCGGGAG TGAGCAGAGCCAGCATCCTACCCTTGGTGCTGGGACCACCAGACACTGGA TGCCGGACAGCATGTGCCGAGCATGCTCCGACTGTGAGCAGCCTTTCAAC ATGTTCCGTCGCAGGTCATTGAAATGGCATGCTGTGGCTGTCACCTACAT CAATCACCTGCCATGCCCAAAGACAACAAACCTGCACTCACTCCTCTGGC TGGTTGACTCTTTTTCGTGATCTTTCTTTTCTTTCCTTTCCTTCTCTCAG GCACCACTGCCGCGTTTGTGGACAGGTCTTTTGCCAAGCATGCAGCTCAT CGTTCATCGACGGCCGGGACTTTGCCATTGCTGGGTCAGTCAGGGTCTGC CACAGCTGCCACGATAAGCACATGCAGCGGCTCAAGAAGGGAGGCCACCA G
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Coding sequence (CDS) from alignment at C-australica_Contig_992:175..1175-

>mRNA_C-australica_Contig_992.1.1 ID=mRNA_C-australica_Contig_992.1.1|Name=mRNA_C-australica_Contig_992.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=531bp|location=Sequence derived from alignment at C-australica_Contig_992:175..1175- (Chrysoparadoxa australica CS_1217)
ATGCTGTATTATGCCAAGCAAAATGAGCCCCCTAGCTCCCCCCTCTCTCC
CGCAGGCACAGTGGACAGGGGAAAGGAGAGACAGGCGGAGCTTGAGCAGT
TTGCCCAAACAGTGGAGTTCCCATCTCCATGCATCGACAGGATGACTCGG
TTCCCTGTCCCTGCTATTGGCCGGCAGAGGGATGTCTATGCATTAGACTG
GTCTGGCTCGGATGGCGAGGGCGAGGACGAGCGTGACGGTGACGTCTCTA
GGCAAGGCACCGGGAGTGAGCAGAGCCAGCATCCTACCCTTGGTGCTGGG
ACCACCAGACACTGGATGCCGGACAGCATGTGCCGAGCATGCTCCGACTG
TGAGCAGCCTTTCAACATGTTCCGTCGCAGGCACCACTGCCGCGTTTGTG
GACAGGTCTTTTGCCAAGCATGCAGCTCATCGTTCATCGACGGCCGGGAC
TTTGCCATTGCTGGGTCAGTCAGGGTCTGCCACAGCTGCCACGATAAGCA
CATGCAGCGGCTCAAGAAGGGAGGCCACCAG
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