mRNA_C-australica_Contig_992.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_992.2.1
Unique NamemRNA_C-australica_Contig_992.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_992.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_992contigC-australica_Contig_992:3198..4217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size709
Hectar predicted targeting categoryother localisation
Exons2
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588860.1353788-UTR-C-australica_Contig_992:3197..32911682588860.1353788-UTR-C-australica_Contig_992:3197..3291Chrysoparadoxa australica CS_1217UTRC-australica_Contig_992 3198..3291 -
1682588860.1581988-UTR-C-australica_Contig_992:3648..37521682588860.1581988-UTR-C-australica_Contig_992:3648..3752Chrysoparadoxa australica CS_1217UTRC-australica_Contig_992 3649..3752 -
1682588860.1750307-UTR-C-australica_Contig_992:4063..42171682588860.1750307-UTR-C-australica_Contig_992:4063..4217Chrysoparadoxa australica CS_1217UTRC-australica_Contig_992 4064..4217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588860.147006-CDS-C-australica_Contig_992:3291..36481682588860.147006-CDS-C-australica_Contig_992:3291..3648Chrysoparadoxa australica CS_1217CDSC-australica_Contig_992 3292..3648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_992.2.1prot_C-australica_Contig_992.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_992 3292..3648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_992.2.1

>prot_C-australica_Contig_992.2.1 ID=prot_C-australica_Contig_992.2.1|Name=mRNA_C-australica_Contig_992.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=119bp
MLCLIKKGAAVNEKGPEGVTPLTIACEMGHVLCAKVLLDSGTDINAAGYK
RRTALMYAAEKGHLPVLQYLLEKAADVSAADDFQITALHHACFNGRASWV
PLLLDSRADLNATDCDGD*
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mRNA from alignment at C-australica_Contig_992:3198..4217-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_992.2.1 ID=mRNA_C-australica_Contig_992.2.1|Name=mRNA_C-australica_Contig_992.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1020bp|location=Sequence derived from alignment at C-australica_Contig_992:3198..4217- (Chrysoparadoxa australica CS_1217)
CTTGCCCTCTTCATTGATACCTATAAGGTCTGCTCCAGGAGCTGCCTGGG
GTACTCTGGCCATTACATTACAAGCCAAGGTTGAGGAGAGGAGAGGAAGA
GGGATCAGCATTATGTCAGCTGCTGAGGTTTAGGTCCTCGTGAGAGAGAG
CAAGGTGAGAGGAAGGGGGTAATCAATCTTAAGTCTCATACCACCGCTAA
CGACGGACGGTGACACGGAGGGATCAGAGGTTCGGGGCTCGGGACTCTCC
CTCATCTGTGCTACATCATCAGTCACCCATCACCAACCACCTATCAACAA
AGCGGGAGGAGAGAGCGTGGGGCCGGGAGATTAAGCAGCTTAATTGAGGG
TAGCTTGCGGGGAGGTGATTGAGCTCCTCGCCTTATTCCTCTCCTCTCCT
CTTAACCTCAATCAATGCTAATAGCAAGGCTTTTTAACCTTCTCCCCTTT
CCTTGGTTGCCTCAGCTGAAGACAGCTAAGTAAATAGAGAATGAGTGAGT
TTATGAGTGAGGAGGAAAGCGCTGAAGGAGTCCTTGCGTCTGGCTGCAGT
GGATGGTGATGTGGAGCTGATGCTGTGTTTGATCAAGAAGGGAGCAGCAG
TGAATGAGAAAGGGCCTGAGGGGGTTACACCGCTCACGATTGCTTGTGAG
ATGGGGCATGTGTTGTGCGCTAAGGTTTTGCTTGATAGTGGTACAGATAT
CAATGCAGCTGGTTACAAGAGAAGAACAGCTCTCATGTATGCCGCAGAGA
AGGGCCACCTTCCAGTGTTGCAGTACCTTTTGGAAAAAGCTGCTGATGTT
AGCGCAGCGGACGATTTTCAGATCACTGCACTTCATCACGCTTGTTTTAA
TGGCCGCGCCAGTTGGGTACCTCTTCTTCTCGACAGCCGTGCAGATCTTA
ATGCTACAGATTGTGATGGAGATTGAGCCCTAATGGTTACTTTAGTACCA
CACAGATGTCGTTATTTTAAAGAGAGGTGCAGATCCAGACAAGTAAATTA
CATATGCACGTCATAGTATT
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Coding sequence (CDS) from alignment at C-australica_Contig_992:3198..4217-

>mRNA_C-australica_Contig_992.2.1 ID=mRNA_C-australica_Contig_992.2.1|Name=mRNA_C-australica_Contig_992.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=357bp|location=Sequence derived from alignment at C-australica_Contig_992:3198..4217- (Chrysoparadoxa australica CS_1217)
ATGCTGTGTTTGATCAAGAAGGGAGCAGCAGTGAATGAGAAAGGGCCTGA
GGGGGTTACACCGCTCACGATTGCTTGTGAGATGGGGCATGTGTTGTGCG
CTAAGGTTTTGCTTGATAGTGGTACAGATATCAATGCAGCTGGTTACAAG
AGAAGAACAGCTCTCATGTATGCCGCAGAGAAGGGCCACCTTCCAGTGTT
GCAGTACCTTTTGGAAAAAGCTGCTGATGTTAGCGCAGCGGACGATTTTC
AGATCACTGCACTTCATCACGCTTGTTTTAATGGCCGCGCCAGTTGGGTA
CCTCTTCTTCTCGACAGCCGTGCAGATCTTAATGCTACAGATTGTGATGG
AGATTGA
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