mRNA_C-australica_Contig_9910.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9910.2.1
Unique NamemRNA_C-australica_Contig_9910.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A3B0UD99_9ZZZZ (ABC transporter, permease protein (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0UD99_9ZZZZ)

HSP 1 Score: 105 bits (263), Expect = 4.280e-27
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 FLMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261
            FL E++ ITL +GYVG++    FI+SG L+SMM SF FP  FF  P V    AI ATLVLAI G+LAGYFPARKAAK+ PIEAL+DE
Sbjct:   81 FLQESMFITLTAGYVGLVAGFVFIDSGTLSSMMESFSFPMDFFKKPEVSLKGAITATLVLAIFGSLAGYFPARKAAKVEPIEALKDE 167          
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: UPI00191FF01A (ABC transporter permease n=1 Tax=Marivirga atlantica TaxID=1548457 RepID=UPI00191FF01A)

HSP 1 Score: 110 bits (276), Expect = 5.630e-27
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 FLMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261
            FL E++ ITLV+GYVG+++   FI+SG L+ MM SFGFP  FF  P V    A  ATLVLA+ G+LAGYFPARKAAK+PPIEALRDE
Sbjct:  329 FLQESMFITLVAGYVGLVLGFVFIDSGGLSEMMFSFGFPVDFFKKPEVSLRGAAIATLVLALLGSLAGYFPARKAAKVPPIEALRDE 415          
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A3B0VRL9_9ZZZZ (ABC transporter, permease protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0VRL9_9ZZZZ)

HSP 1 Score: 107 bits (268), Expect = 6.860e-26
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 FLMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261
            FL E++ ITL +GYVGM+    FI+SG L++MM SF FP  FF NP V  + AI ATLVLA+ G+LAGYFPARKAAK+ PIEAL+DE
Sbjct:  316 FLQESMFITLTAGYVGMVAGFIFIDSGSLSAMMESFSFPMDFFKNPEVSISGAITATLVLAVFGSLAGYFPARKAAKVEPIEALKDE 402          
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A7K3XFJ4_9BACT (FtsX-like permease family protein n=1 Tax=Mariniphaga sp. TaxID=1954475 RepID=A0A7K3XFJ4_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 6.510e-18
Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    4 LMEALLITLVSGYVGMIVAMAFIE--SGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261
            L+E++LIT V+GY G+++ +  +E  + +L  M  S G    FF NP VDF  A+A+TL+L ISG LAGY PARKAA + PIEALRDE
Sbjct:  331 LLESILITTVAGYTGLVIGVGIMEGINYFLEQMFASGGGDGMFFRNPTVDFGTALASTLILVISGALAGYLPARKAANVKPIEALRDE 418          
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A0K8QXI9_9BACT (ABC-type antimicrobial peptide transport system, permease component n=2 Tax=Bacteroidia TaxID=200643 RepID=A0A0K8QXI9_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 6.110e-17
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    4 LMEALLITLVSGYVGMIVAMAFIE--SGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261
            L+E++LIT ++GY+G+++ +  +E  +  L  M+ S G  + FF NP VDF  AI+ATL+L +SG LAGY PARKAA + PIEAL DE
Sbjct:  331 LLESILITTIAGYIGLVMGVGLMEGFNYALEQMISSGGGDQIFFRNPTVDFGTAISATLILILSGALAGYIPARKAASVKPIEALHDE 418          
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A6A0R7D4_9BACT (ABC transporter permease n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A6A0R7D4_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 1.130e-16
Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    4 LMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261
            +ME++LIT  SGY+GM++ +  +E      +   F  P  FF+NP VDF  AI AT++L ++GTLAG  PARKAA I PIEALRDE
Sbjct:  332 MMESILITSFSGYIGMVLGVGIVE------LANKFMPPSEFFMNPEVDFQVAITATIILIVAGTLAGLIPARKAASIRPIEALRDE 411          
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A2N5Z295_9BACT (FtsX domain-containing protein (Fragment) n=1 Tax=Marinilabiliales bacterium TaxID=2053303 RepID=A0A2N5Z295_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 3.230e-16
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    4 LMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261
            L+E++LIT  +GYVG+++ +  +E       +LS      FF NP  DF  AI+AT++L +SG LAG+ PARKAA I PIEALRDE
Sbjct:   77 LLESILITAFAGYVGLVLGVGLLE-------LLSPHIQSEFFTNPEADFRIAISATILLILSGALAGFVPARKAASIKPIEALRDE 155          
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A081BQC0_9BACT (Putative ABC transporter ATP-binding protein n=1 Tax=Candidatus Moduliflexus flocculans TaxID=1499966 RepID=A0A081BQC0_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 5.570e-16
Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    4 LMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261
            L E++L+T VSGY+G++V++  IE   ++  M +F     +F NP +DF  AI AT++L ++G +AGY PAR+AAKI PIEALR E
Sbjct:  329 LQESVLLTAVSGYMGLVVSVGLIEG--ISYAMNTFHLQSDYFSNPEIDFKTAIFATMLLVVTGAIAGYIPARQAAKINPIEALRSE 412          
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A1G9JG61_9BACT (Putative ABC transport system permease protein n=1 Tax=Catalinimonas alkaloidigena TaxID=1075417 RepID=A0A1G9JG61_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 7.710e-16
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   10 EALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261
            EA+ IT+V+GY+G++  +  IE   +  ++ S G    FF NP +D   A+ ATL+L I+G LAG+FPARKAA IPPIEALR+E
Sbjct:  333 EAIFITIVAGYLGLLAGVGLIEL--VNYLLQSSGGGVDFFRNPEIDLQTALMATLLLVIAGALAGFFPARKAAAIPPIEALREE 414          
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Match: A0A1Y1CKQ7_9BACT (Uncharacterized protein n=1 Tax=Labilibaculum antarcticum TaxID=1717717 RepID=A0A1Y1CKQ7_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 7.790e-16
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    4 LMEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPES-FFVNPHVDFANAIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE 261
            LMEA+ IT  SGY+G+I  +  +E      ++     P + +F+NP VD   A+ AT+VL I+G LAG+FPARKAA+I PIEALRDE
Sbjct:  331 LMEAIFITAASGYIGLIAGVGLLEMITKFDLIYKIYPPAAIYFINPQVDLGVAVGATIVLVITGALAGFFPARKAARIRPIEALRDE 417          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9910.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B0UD99_9ZZZZ4.280e-2763.22ABC transporter, permease protein (Fragment) n=1 T... [more]
UPI00191FF01A5.630e-2764.37ABC transporter permease n=1 Tax=Marivirga atlanti... [more]
A0A3B0VRL9_9ZZZZ6.860e-2663.22ABC transporter, permease protein n=1 Tax=hydrothe... [more]
A0A7K3XFJ4_9BACT6.510e-1853.41FtsX-like permease family protein n=1 Tax=Mariniph... [more]
A0A0K8QXI9_9BACT6.110e-1751.14ABC-type antimicrobial peptide transport system, p... [more]
A0A6A0R7D4_9BACT1.130e-1652.33ABC transporter permease n=1 Tax=Bacteroidetes bac... [more]
A0A2N5Z295_9BACT3.230e-1650.00FtsX domain-containing protein (Fragment) n=1 Tax=... [more]
A0A081BQC0_9BACT5.570e-1648.84Putative ABC transporter ATP-binding protein n=1 T... [more]
A0A1G9JG61_9BACT7.710e-1651.19Putative ABC transport system permease protein n=1... [more]
A0A1Y1CKQ7_9BACT7.790e-1650.57Uncharacterized protein n=1 Tax=Labilibaculum anta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9910contigC-australica_Contig_9910:586..849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1408473.JHXO01000010_gene3697
PFAMsFtsX,MacB_PCD
Model size264
Max annot lvl976|Bacteroidetes
KEGG koko:K02004
KEGG TC3.A.1
KEGG ModuleM00258
Hectar predicted targeting categorysignal peptide
Exons1
Evalue8.63e-17
EggNOG OGsCOG0577@1|root,COG0577@2|Bacteria,4NEBD@976|Bacteroidetes,2FNZ2@200643|Bacteroidia
DescriptionEfflux ABC transporter, permease protein
Cds size258
COG categoryV
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588859.8923016-CDS-C-australica_Contig_9910:585..8431682588859.8923016-CDS-C-australica_Contig_9910:585..843Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9910 586..843 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588859.9036355-UTR-C-australica_Contig_9910:843..8491682588859.9036355-UTR-C-australica_Contig_9910:843..849Chrysoparadoxa australica CS_1217UTRC-australica_Contig_9910 844..849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9910.2.1prot_C-australica_Contig_9910.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9910 586..843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9910.2.1

>prot_C-australica_Contig_9910.2.1 ID=prot_C-australica_Contig_9910.2.1|Name=mRNA_C-australica_Contig_9910.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=86bp
MEALLITLVSGYVGMIVAMAFIESGWLTSMMLSFGFPESFFVNPHVDFAN
AIAATLVLAISGTLAGYFPARKAAKIPPIEALRDE*
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mRNA from alignment at C-australica_Contig_9910:586..849-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9910.2.1 ID=mRNA_C-australica_Contig_9910.2.1|Name=mRNA_C-australica_Contig_9910.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=264bp|location=Sequence derived from alignment at C-australica_Contig_9910:586..849- (Chrysoparadoxa australica CS_1217)
TTTTTGATGGAAGCACTACTGATCACCTTAGTGAGTGGGTATGTCGGAAT GATCGTTGCCATGGCATTTATTGAGTCTGGCTGGCTCACCTCCATGATGC TTTCATTCGGTTTTCCTGAAAGTTTCTTTGTGAATCCACATGTTGATTTT GCTAACGCAATTGCTGCTACACTGGTATTGGCAATAAGTGGTACCCTGGC TGGATATTTTCCGGCCAGAAAGGCAGCCAAAATCCCGCCCATTGAAGCAT TACGAGATGAATAA
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Coding sequence (CDS) from alignment at C-australica_Contig_9910:586..849-

>mRNA_C-australica_Contig_9910.2.1 ID=mRNA_C-australica_Contig_9910.2.1|Name=mRNA_C-australica_Contig_9910.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=258bp|location=Sequence derived from alignment at C-australica_Contig_9910:586..849- (Chrysoparadoxa australica CS_1217)
ATGGAAGCACTACTGATCACCTTAGTGAGTGGGTATGTCGGAATGATCGT
TGCCATGGCATTTATTGAGTCTGGCTGGCTCACCTCCATGATGCTTTCAT
TCGGTTTTCCTGAAAGTTTCTTTGTGAATCCACATGTTGATTTTGCTAAC
GCAATTGCTGCTACACTGGTATTGGCAATAAGTGGTACCCTGGCTGGATA
TTTTCCGGCCAGAAAGGCAGCCAAAATCCCGCCCATTGAAGCATTACGAG
ATGAATAA
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