mRNA_C-australica_Contig_99.3.2 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_99.3.2
Unique NamemRNA_C-australica_Contig_99.3.2
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
[Close]
BLAST of mRNA_C-australica_Contig_99.3.2 vs. uniprot
Match: A0A6S8AM73_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8AM73_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.090e-27
Identity = 52/86 (60.47%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:   55 AFPANYTVPEVWTGPAEPPSGGSKLNSDTAGARRERELPRGEHAVQLYSLGTPNGRKVTILLEELGIEYDAYKINIGEGDQFDSDF 312
            + P+NY VP+VW  P      G+ +N  TAGAR E +LPRG+H +QL+SLGTPNG+KVTI+LEELG+EYDA+K+NIG+G+QF S F
Sbjct:   30 SLPSNYVVPKVWVEPKIEGKWGA-INKPTAGARFEAKLPRGDHPLQLHSLGTPNGQKVTIMLEELGVEYDAWKVNIGKGEQFSSGF 114
[Close]
BLAST of mRNA_C-australica_Contig_99.3.2 vs. uniprot
Match: A0A7S3PBB9_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3PBB9_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.760e-26
Identity = 52/86 (60.47%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:   55 AFPANYTVPEVWTGPAEPPSGGSKLNSDTAGARRERELPRGEHAVQLYSLGTPNGRKVTILLEELGIEYDAYKINIGEGDQFDSDF 312
            + P+NY VP+VW  P      G+ +N  TAGAR E +LPRG+H +QL+SLGTPNG+KVTI+LEELG+EYDA+K+NIG+G+QF S F
Sbjct:   30 SLPSNYVVPKVWVEPKIEGKWGA-INKPTAGARFEAKLPRGDHPLQLHSLGTPNGQKVTIMLEELGVEYDAWKVNIGKGEQFSSGF 114
[Close]
BLAST of mRNA_C-australica_Contig_99.3.2 vs. uniprot
Match: A0A7S0EYN3_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EYN3_9CRYP)

HSP 1 Score: 107 bits (266), Expect = 8.390e-25
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:   55 AFPANYTVPEVWTGPAEPPSGGS--KLNSDTAGARRERELPRGEHAVQLYSLGTPNGRKVTILLEELGIEYDAYKINIGEGDQFDSDF 312
            + P +Y VP VWT P E   GG+  K+N   AGAR ++ LPRGEH +QLYSLGTPNG KVTILLEELGIEYDA+KINI + DQF S+F
Sbjct:   99 SLPESYVVPAVWTEP-EDGLGGTMGKMNRPIAGARFDKALPRGEHPLQLYSLGTPNGHKVTILLEELGIEYDAWKINIMQLDQFGSEF 185
[Close]
BLAST of mRNA_C-australica_Contig_99.3.2 vs. uniprot
Match: A0A7W6JXW6_9SPHN (GST-like protein n=4 Tax=Sphingomonas TaxID=13687 RepID=A0A7W6JXW6_9SPHN)

HSP 1 Score: 102 bits (253), Expect = 2.090e-23
Identity = 56/92 (60.87%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:   61 PANYTVPEVWTGPAEPPSGG--SKLNSDTAGARRERELPRGEHAVQLYSLGTPNGRKVTILLEEL------GIEYDAYKINIGEGDQFDSDF 312
            PA Y  P+VWT   E PSGG  + +N   +GA  ++ LP GEH +QLYSLGTPNG+KVTILLEEL      G EYDA+KINIGEGDQF S F
Sbjct:   12 PAGYVPPKVWTW--EQPSGGQFANINRPVSGATHDKVLPVGEHPIQLYSLGTPNGQKVTILLEELLAAGHAGAEYDAWKINIGEGDQFGSGF 101
[Close]
BLAST of mRNA_C-australica_Contig_99.3.2 vs. uniprot
Match: A0A7X5ZX88_9SPHN (GST-like protein n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A7X5ZX88_9SPHN)

HSP 1 Score: 101 bits (251), Expect = 4.110e-23
Identity = 56/93 (60.22%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:   58 FPANYTVPEVWTGPAEPPSGG--SKLNSDTAGARRERELPRGEHAVQLYSLGTPNGRKVTILLEEL------GIEYDAYKINIGEGDQFDSDF 312
             PA Y  P VWT   E PSGG  + +N   +GA  E+ LP G H +QLYSLGTPNG+KVTILLEEL      G EYDA+KINIGEGDQF S F
Sbjct:   11 LPAGYVPPRVWTW--EQPSGGQFANINRPVSGATHEKALPVGAHPIQLYSLGTPNGQKVTILLEELLAAGHGGAEYDAWKINIGEGDQFGSGF 101
[Close]
BLAST of mRNA_C-australica_Contig_99.3.2 vs. uniprot
Match: UPI001CC131AF (glutathione-dependent disulfide-bond oxidoreductase n=1 Tax=Kangiella taiwanensis TaxID=1079179 RepID=UPI001CC131AF)

HSP 1 Score: 100 bits (249), Expect = 7.020e-23
Identity = 52/88 (59.09%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:   67 NYTVPEVWTGPAEPPSGGSKLNSDTAGARRERELPRGEHAVQLYSLGTPNGRKVTILLEEL------GIEYDAYKINIGEGDQFDSDF 312
            NYT P+VWT  +E     + +N  TAGAR E+ELP+GEH  QLYSL TPNG+KVTI+LEEL        EYDA+ I IG+GDQF SDF
Sbjct:    6 NYTPPKVWTWNSENGGEWASINRPTAGARHEQELPKGEHPFQLYSLATPNGQKVTIMLEELLAMGHNNAEYDAHLIKIGDGDQFGSDF 93
[Close]
BLAST of mRNA_C-australica_Contig_99.3.2 vs. uniprot
Match: A0A0S6X0Z7_9SPHN (Glutathione S-transferase YghU n=5 Tax=Novosphingobium TaxID=165696 RepID=A0A0S6X0Z7_9SPHN)

HSP 1 Score: 100 bits (248), Expect = 8.700e-23
Identity = 54/87 (62.07%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:   70 YTVPEVWTGPAEPPSGGSKLNSDTAGARRERELPRGEHAVQLYSLGTPNGRKVTILLEEL---GI---EYDAYKINIGEGDQFDSDF 312
            YT P+VWT  AE     + +N  TAGAR E+ELPRGEH  QLYSLGTPNG+KVTIL EEL   G+   EYDA+ +NIGEG QF S F
Sbjct:    6 YTPPKVWTHDAENGGTWASINRPTAGAREEKELPRGEHPFQLYSLGTPNGQKVTILFEELLAAGVSEAEYDAWLVNIGEGTQFTSGF 92
[Close]
BLAST of mRNA_C-australica_Contig_99.3.2 vs. uniprot
Match: A0A4U1YNY2_9VIBR (Glutathione-dependent disulfide-bond oxidoreductase n=4 Tax=Vibrionales TaxID=135623 RepID=A0A4U1YNY2_9VIBR)

HSP 1 Score: 99.4 bits (246), Expect = 1.800e-22
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:   70 YTVPEVWTGPAEPPSGGSK---LNSDTAGARRERELPRGEHAVQLYSLGTPNGRKVTILLEEL---GI---EYDAYKINIGEGDQFDSDF 312
            YT P++W   +   SGG+K   +NS  +GAR E++LP G+HA+QLYSLGTPNG+KVTILLEEL   GI   EYDAY INIGEGDQF S F
Sbjct:    5 YTPPKIWVNDS---SGGNKWANINSPVSGARHEQDLPVGKHALQLYSLGTPNGQKVTILLEELLALGITEAEYDAYLINIGEGDQFSSGF 91
[Close]
BLAST of mRNA_C-australica_Contig_99.3.2 vs. uniprot
Match: A0A7S2U4I1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U4I1_9EUKA)

HSP 1 Score: 100 bits (250), Expect = 1.940e-22
Identity = 57/103 (55.34%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:   49 QEAFPANYTVPEVWTGPAEPPSGGS--KLNSDTAGARRERELPRGEHAVQLYSLGTPNGRKVTILLEEL----GIEYDAYKINIGEGDQFDSDFGTASYASPN 339
            QEAFP  Y  PEVW      P GG    LN   AG + E+ELP+G+H +QL+S+ TPNG K T+LLEEL    G+EYDAY INIGEGDQF S F     A+PN
Sbjct:   83 QEAFPEGYVPPEVWE---YKPQGGKWGSLNKPIAGPQSEKELPKGQHPLQLHSMATPNGVKATVLLEELHDAYGLEYDAYPINIGEGDQFTSGF---VQANPN 179
[Close]
BLAST of mRNA_C-australica_Contig_99.3.2 vs. uniprot
Match: UPI001FB8FAAA (glutathione-dependent disulfide-bond oxidoreductase n=1 Tax=Novosphingobium sp. 2638 TaxID=2930389 RepID=UPI001FB8FAAA)

HSP 1 Score: 99.0 bits (245), Expect = 2.390e-22
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:   70 YTVPEVWTGPAEPPSGGSKLNSDTAGARRERELPRGEHAVQLYSLGTPNGRKVTILLEEL------GIEYDAYKINIGEGDQFDSDF 312
            YT P+VWT  AE     +K+N   AG   E+ LPRGEH +QLYSLGTPNG+KVTI+LEEL      G EYDA+ I+IG+GDQF S F
Sbjct:    6 YTPPKVWTWDAESGGDWAKINRPIAGPTHEKNLPRGEHPLQLYSLGTPNGQKVTIMLEELLAAGKTGAEYDAWLISIGDGDQFSSGF 92
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_99.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S8AM73_9STRA2.090e-2760.47Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S3PBB9_9STRA2.760e-2660.47Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S0EYN3_9CRYP8.390e-2564.77Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7W6JXW6_9SPHN2.090e-2360.87GST-like protein n=4 Tax=Sphingomonas TaxID=13687 ... [more]
A0A7X5ZX88_9SPHN4.110e-2360.22GST-like protein n=4 Tax=Proteobacteria TaxID=1224... [more]
UPI001CC131AF7.020e-2359.09glutathione-dependent disulfide-bond oxidoreductas... [more]
A0A0S6X0Z7_9SPHN8.700e-2362.07Glutathione S-transferase YghU n=5 Tax=Novosphingo... [more]
A0A4U1YNY2_9VIBR1.800e-2262.22Glutathione-dependent disulfide-bond oxidoreductas... [more]
A0A7S2U4I1_9EUKA1.940e-2255.34Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
UPI001FB8FAAA2.390e-2258.62glutathione-dependent disulfide-bond oxidoreductas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_99contigC-australica_Contig_99:14389..15013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1449076.JOOE01000004_gene212
PFAMsGST_C,GST_C_2,GST_N
Model size442
Max annot lvl204457|Sphingomonadales
KEGG koko:K11209
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.66e-23
EggNOG OGsCOG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,2TTDF@28211|Alphaproteobacteria,2K19J@204457|Sphingomonadales
Ec32 ortholog descriptionPutative Glutathione S-transferase
Ec32 orthologEc-16_001680.1
DescriptionGlutathione S-transferase
Cds size381
COG categoryO
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588856.9593186-UTR-C-australica_Contig_99:14388..144071682588856.9593186-UTR-C-australica_Contig_99:14388..14407Chrysoparadoxa australica CS_1217UTRC-australica_Contig_99 14389..14407 -
1682588857.0113714-UTR-C-australica_Contig_99:14971..150131682588857.0113714-UTR-C-australica_Contig_99:14971..15013Chrysoparadoxa australica CS_1217UTRC-australica_Contig_99 14972..15013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588856.971082-CDS-C-australica_Contig_99:14407..146051682588856.971082-CDS-C-australica_Contig_99:14407..14605Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 14408..14605 -
1682588856.9840863-CDS-C-australica_Contig_99:14676..148171682588856.9840863-CDS-C-australica_Contig_99:14676..14817Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 14677..14817 -
1682588857.000777-CDS-C-australica_Contig_99:14929..149711682588857.000777-CDS-C-australica_Contig_99:14929..14971Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 14930..14971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_99.3.2prot_C-australica_Contig_99.3.2Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_99 14408..14971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_99.3.2

>prot_C-australica_Contig_99.3.2 ID=prot_C-australica_Contig_99.3.2|Name=mRNA_C-australica_Contig_99.3.2|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=127bp
MTQEAFPANYTVPEVWTGPAEPPSGGSKLNSDTAGARRERELPRGEHAVQ
LYSLGTPNGRKVTILLEELGIEYDAYKINIGEGDQFDSDFGTASYASPNL
GRTGVASCYMSRDRFSVFPHMTHLLS*
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mRNA from alignment at C-australica_Contig_99:14389..15013-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_99.3.2 ID=mRNA_C-australica_Contig_99.3.2|Name=mRNA_C-australica_Contig_99.3.2|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=625bp|location=Sequence derived from alignment at C-australica_Contig_99:14389..15013- (Chrysoparadoxa australica CS_1217)
ACAACACCCCACCTGCCTCGTTTTCGACATTTAAAAGAGCACATGACGCA
GGAGGCTTTTCCCGCTAACTACACGGTCCCCGAGGTCCTGCTCCTTTTTT
CCCCTTCACTTATCTATTGCAAACCCCCGCCTTGCCCCTCTTCCATGGCT
TCTTTCTGCTGATCTATTGCTGCCCCAATGTTGCCCGTCCGCCTAGGTCT
GGACTGGACCAGCTGAGCCCCCTTCTGGAGGTTCCAAACTCAACAGCGAC
ACAGCTGGAGCTCGAAGGGAGAGGGAGCTGCCGCGTGGCGAACATGCTGT
TCAGCTGTACTCACTGGGTACTCCCAATGGGCGCAAGGTTTGTCAACTTG
CCAAAGTTGCAACTGGAACCTGCACCAAAGAGCTTACTGCCCCTCCCTCC
CATTGCAGGTGACTATTTTGCTTGAGGAGCTGGGCATTGAATACGATGCA
TACAAAATAAATATTGGGGAGGGCGATCAGTTTGACTCAGATTTCGGTAC
GGCTTCTTACGCTAGCCCAAATCTTGGGCGTACCGGTGTTGCATCTTGCT
ATATGTCAAGAGATCGCTTCAGCGTGTTTCCGCACATGACTCACTTGCTC
AGCTGACACCACATCACATCTTCTC
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Coding sequence (CDS) from alignment at C-australica_Contig_99:14389..15013-

>mRNA_C-australica_Contig_99.3.2 ID=mRNA_C-australica_Contig_99.3.2|Name=mRNA_C-australica_Contig_99.3.2|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=381bp|location=Sequence derived from alignment at C-australica_Contig_99:14389..15013- (Chrysoparadoxa australica CS_1217)
ATGACGCAGGAGGCTTTTCCCGCTAACTACACGGTCCCCGAGGTCTGGAC
TGGACCAGCTGAGCCCCCTTCTGGAGGTTCCAAACTCAACAGCGACACAG
CTGGAGCTCGAAGGGAGAGGGAGCTGCCGCGTGGCGAACATGCTGTTCAG
CTGTACTCACTGGGTACTCCCAATGGGCGCAAGGTGACTATTTTGCTTGA
GGAGCTGGGCATTGAATACGATGCATACAAAATAAATATTGGGGAGGGCG
ATCAGTTTGACTCAGATTTCGGTACGGCTTCTTACGCTAGCCCAAATCTT
GGGCGTACCGGTGTTGCATCTTGCTATATGTCAAGAGATCGCTTCAGCGT
GTTTCCGCACATGACTCACTTGCTCAGCTGA
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