mRNA_C-australica_Contig_99.11.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_99.11.1
Unique NamemRNA_C-australica_Contig_99.11.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_99.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_99contigC-australica_Contig_99:34333..34931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size344
Hectar predicted targeting categoryother localisation
Exons3
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588855.9336956-CDS-C-australica_Contig_99:34333..344751682588855.9336956-CDS-C-australica_Contig_99:34333..34475Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 34334..34475 -
1682588855.9421287-CDS-C-australica_Contig_99:34630..347681682588855.9421287-CDS-C-australica_Contig_99:34630..34768Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 34631..34768 -
1682588855.9499102-CDS-C-australica_Contig_99:34869..349311682588855.9499102-CDS-C-australica_Contig_99:34869..34931Chrysoparadoxa australica CS_1217CDSC-australica_Contig_99 34870..34931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_99.11.1prot_C-australica_Contig_99.11.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_99 34334..34931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_99.11.1

>prot_C-australica_Contig_99.11.1 ID=prot_C-australica_Contig_99.11.1|Name=mRNA_C-australica_Contig_99.11.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=114bp
RLEALDQGSKEHTEHCSSIQKLEQQRIDIINDRGDLATERDARGIGAGAV
AQLGAEAAAKGDTFATSQAFHHKILTRTTQHHLWGNDSRCQPDKHDHGQA
YLLALPPSALVQPA
back to top

mRNA from alignment at C-australica_Contig_99:34333..34931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_99.11.1 ID=mRNA_C-australica_Contig_99.11.1|Name=mRNA_C-australica_Contig_99.11.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=599bp|location=Sequence derived from alignment at C-australica_Contig_99:34333..34931- (Chrysoparadoxa australica CS_1217)
CGGTTGGAAGCCCTAGACCAGGGTAGCAAAGAGCACACAGAGCACTGCTC
TTCGATTCAGAAGTGAGTCCTTTCAGTAGCCTTCACCGCCAGCAAGAGCA
AGGGGGACAAGCGATTGATCATGAGCTGCAGGGAACTGACCTCCACATGT
GTTGCCATCTCAGGCTGGAACAGCAGCGAATCGATATCATCAATGACAGG
GGTGACCTCGCAACCGAGAGGGATGCCCGAGGCATTGGTGCTGGTGCAGT
AGCACAGCTGGGTGCCGAGGCTGCTGCCAAGGGTGACACATTTGCAACAA
GGTCATATGTCAAACCACCACAACAACTGCTCATAGCTTCCTTTGTGTCA
CGATCCTGTCAAGGACACCGCCACTCACAGCGGCTCAGCTCCAGGGTAAT
GATCCATTGCTACTGACTGACATTGTCCTCCTACCTTCCCACTCCCCTTG
TTGCAGCCAAGCCTTCCACCACAAGATCCTGACCCGCACAACCCAGCACC
ACCTCTGGGGCAACGATTCACGCTGCCAGCCTGACAAACATGACCATGGC
CAAGCCTATCTGCTTGCTCTGCCACCCTCTGCACTAGTGCAACCTGCAC
back to top

Coding sequence (CDS) from alignment at C-australica_Contig_99:34333..34931-

>mRNA_C-australica_Contig_99.11.1 ID=mRNA_C-australica_Contig_99.11.1|Name=mRNA_C-australica_Contig_99.11.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=342bp|location=Sequence derived from alignment at C-australica_Contig_99:34333..34931- (Chrysoparadoxa australica CS_1217)
CGGTTGGAAGCCCTAGACCAGGGTAGCAAAGAGCACACAGAGCACTGCTC
TTCGATTCAGAAGCTGGAACAGCAGCGAATCGATATCATCAATGACAGGG
GTGACCTCGCAACCGAGAGGGATGCCCGAGGCATTGGTGCTGGTGCAGTA
GCACAGCTGGGTGCCGAGGCTGCTGCCAAGGGTGACACATTTGCAACAAG
CCAAGCCTTCCACCACAAGATCCTGACCCGCACAACCCAGCACCACCTCT
GGGGCAACGATTCACGCTGCCAGCCTGACAAACATGACCATGGCCAAGCC
TATCTGCTTGCTCTGCCACCCTCTGCACTAGTGCAACCTGCA
back to top