mRNA_C-australica_Contig_9892.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9892.1.1
Unique NamemRNA_C-australica_Contig_9892.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9892.1.1 vs. uniprot
Match: A0A222E8C0_9RHOB (Glycerol-3-phosphate transporter ATP-binding subunit n=3 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A222E8C0_9RHOB)

HSP 1 Score: 542 bits (1396), Expect = 2.350e-193
Identity = 274/275 (99.64%), Postives = 275/275 (100.00%), Query Frame = 1
Query:    1 FALFPHLTVRDNVAYSLHISGVSRSEAADRAGKLLDLVQLSAFGDRRIGQLSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVGPPQDIYHKPENAFVADFIGKANFFDGVTEPGGIRIGATHLVADPHFVGGSPVRMAIRPERACLDEEPGANRLPAKITFVRDLGPIREYHLETAVGRMVVEYAAGEGGKIFHVGDTTEVRLPPDALHIFPDPTAHDALAMAAE 825
            FALFPHLTVRDNVAYSLHISGVSRSEAADRAGKLLDLVQLSAFGDRRIGQLSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVGPPQDIYHKPENAFVADFIGKANFFDGVTEPGGIRIGATHLVADPHFVGGSPVR+AIRPERACLDEEPGANRLPAKITFVRDLGPIREYHLETAVGRMVVEYAAGEGGKIFHVGDTTEVRLPPDALHIFPDPTAHDALAMAAE
Sbjct:   84 FALFPHLTVRDNVAYSLHISGVSRSEAADRAGKLLDLVQLSAFGDRRIGQLSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVGPPQDIYHKPENAFVADFIGKANFFDGVTEPGGIRIGATHLVADPHFVGGSPVRVAIRPERACLDEEPGANRLPAKITFVRDLGPIREYHLETAVGRMVVEYAAGEGGKIFHVGDTTEVRLPPDALHIFPDPTAHDALAMAAE 358          
BLAST of mRNA_C-australica_Contig_9892.1.1 vs. uniprot
Match: A0A6F8Q8H7_9RHOB (ABC transporter ATP-binding protein n=7 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A6F8Q8H7_9RHOB)

HSP 1 Score: 446 bits (1146), Expect = 2.340e-155
Identity = 228/275 (82.91%), Postives = 247/275 (89.82%), Query Frame = 1
Query:    1 FALFPHLTVRDNVAYSLHISGVSRSEAADRAGKLLDLVQLSAFGDRRIGQLSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVGPPQDIYHKPENAFVADFIGKANFFDGVTEPGGIRIGATHLVADPHFVGGSPVRMAIRPERACLDEEPGANRLPAKITFVRDLGPIREYHLETAVGRMVVEYAAGEGGKIFHVGDTTEVRLPPDALHIFPDPTAHDALAMAAE 825
            FALFPHL+VR+NVAYSL ISGV +SEAA+RA +LLDLVQLSAFGDRRIG LSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITT+VVTHDQREAMTMADSIVVMSNGRVEQVG PQDIYH P+NAFVADFIGKANFFDGVTEPGGIR+G  HL A P+FV GSPVR+AIRPERACLD+EPG NRL AK+TFVRDLGP+REYHL+T +G MVVE A GE  K   +GD TEVRLPP+ALH+FPDP A    A+AAE
Sbjct:   84 FALFPHLSVRENVAYSLSISGVGKSEAAERANRLLDLVQLSAFGDRRIGALSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTVVVTHDQREAMTMADSIVVMSNGRVEQVGSPQDIYHHPDNAFVADFIGKANFFDGVTEPGGIRVGPMHLSARPNFVRGSPVRVAIRPERACLDDEPGENRLSAKVTFVRDLGPVREYHLDTPLGAMVVENAPGEVRKSLVIGDRTEVRLPPEALHVFPDPQA----AVAAE 354          
BLAST of mRNA_C-australica_Contig_9892.1.1 vs. uniprot
Match: UPI000FDC1AB0 (ABC transporter ATP-binding protein n=1 Tax=Rhodobacterales TaxID=204455 RepID=UPI000FDC1AB0)

HSP 1 Score: 419 bits (1077), Expect = 7.310e-145
Identity = 219/275 (79.64%), Postives = 235/275 (85.45%), Query Frame = 1
Query:    1 FALFPHLTVRDNVAYSLHISGVSRSEAADRAGKLLDLVQLSAFGDRRIGQLSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVGPPQDIYHKPENAFVADFIGKANFFDGVTEPGGIRIGATHLVADPHFVGGSPVRMAIRPERACLDEEPGANRLPAKITFVRDLGPIREYHLETAVGRMVVEYAAGEGGKIFHVGDTTEVRLPPDALHIFPDPTAHDALAMAAE 825
            FALFPHL VR+NVAYSL ISG S++ AA++A  LLDLVQLSA GDRRIG+LSGGQRQRVAIARALAQEP+VFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVG PQDIYH+PENAFVADFIGKANFFDGV E GGIR+G   LV+   F  G  VR+AIRPERA LD+  G NRLPA ITFVRDLGP REYHL+TA+G MVVEYA GEG +    GD  EVRLPPDALH+FP PTA    AMAAE
Sbjct:   84 FALFPHLNVRENVAYSLTISGASKTAAAEKASTLLDLVQLSAMGDRRIGELSGGQRQRVAIARALAQEPDVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVGSPQDIYHRPENAFVADFIGKANFFDGVAEAGGIRVGDQTLVSKSKFHAGYQVRVAIRPERAALDDAEGPNRLPATITFVRDLGPHREYHLDTAIGPMVVEYAIGEGARPMKTGDHVEVRLPPDALHVFPHPTA----AMAAE 354          
BLAST of mRNA_C-australica_Contig_9892.1.1 vs. uniprot
Match: A0A2E3P8Z7_9RHOB (Polyamine ABC transporter ATP-binding protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2E3P8Z7_9RHOB)

HSP 1 Score: 392 bits (1006), Expect = 4.850e-134
Identity = 207/277 (74.73%), Postives = 228/277 (82.31%), Query Frame = 1
Query:    1 FALFPHLTVRDNVAYSLHISGVSRSEAADRAGKLLDLVQLSAFGDRRIGQLSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVGPPQDIYHKPENAFVADFIGKANFFDGVTEPGGIRIGATHL-VADP-HFVGGSPVRMAIRPERACLDEEPGANRLPAKITFVRDLGPIREYHLETAVGRMVVEYAAGEGGKIFHVGDTTEVRLPPDALHIFPDPTAHDALAMAAE 825
            FALFPHL+VR+NVAYSL I GVS+SEA  +A  LLDLVQL  FGDRRIG+LSGGQRQRVAIARALAQEP+VFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMAD IVVMSNGRVEQ G PQDIYH+P NAFVADFIG+ANFFDG  E GGIR+G T L V  P +F  G PVR+A+RPE A LD+    N LPA +TFVRDLGP+R+ HL+TA+GRM+VEYA GE   +F VG T  VRLPPD LH+FP     D  AMAAE
Sbjct:   84 FALFPHLSVRENVAYSLTIGGVSKSEAWAKADTLLDLVQLKTFGDRRIGELSGGQRQRVAIARALAQEPDVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADRIVVMSNGRVEQSGSPQDIYHRPANAFVADFIGRANFFDGTAEAGGIRVGETLLTVKKPLNFTPGRPVRVAVRPEMAALDDAQPENVLPATVTFVRDLGPVRDIHLDTALGRMIVEYALGEEAPVFSVGQTVPVRLPPDHLHVFPG----DTPAMAAE 356          
BLAST of mRNA_C-australica_Contig_9892.1.1 vs. uniprot
Match: UPI001CBFC1E6 (ABC transporter ATP-binding protein n=1 Tax=Tateyamaria pelophila TaxID=328415 RepID=UPI001CBFC1E6)

HSP 1 Score: 389 bits (999), Expect = 4.570e-133
Identity = 194/262 (74.05%), Postives = 222/262 (84.73%), Query Frame = 1
Query:    1 FALFPHLTVRDNVAYSLHISGVSRSEAADRAGKLLDLVQLSAFGDRRIGQLSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVGPPQDIYHKPENAFVADFIGKANFFDGVTEPGGIRIGATHLVADPHFVGGSPVRMAIRPERACLDEEPGANRLPAKITFVRDLGPIREYHLETAVGRMVVEYAAGEGGKIFHVGDTTEVRLPPDALHIFP 786
            FALFPH +VR+NVAYSL I GV +++A ++A +LL+ VQL  FGDRRIG+LSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMAD IVVMSNGRVEQ+  PQD+YHKP NAFVADFIGKANFFDGV   G I++G   L A   F  GS VR+AIRPER C+D++PG NR+PA++ FVRDLGP+REYHL++ +G ++VEYAAGE G     GDTT VRLPPDAL +FP
Sbjct:   84 FALFPHYSVRENVAYSLIIDGVPKAQAYEKANELLETVQLVGFGDRRIGELSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADQIVVMSNGRVEQIAKPQDVYHKPANAFVADFIGKANFFDGVYRDGAIQVGDCRLKAKAGFQSGSLVRVAIRPERTCIDDDPGENRIPARVMFVRDLGPLREYHLQSEIGPIIVEYAAGETGPSLVKGDTTTVRLPPDALQVFP 345          
BLAST of mRNA_C-australica_Contig_9892.1.1 vs. uniprot
Match: A0A640VWR5_9RHOB (Spermidine/putrescine ABC transporter ATP-binding protein n=1 Tax=Roseobacter cerasinus TaxID=2602289 RepID=A0A640VWR5_9RHOB)

HSP 1 Score: 387 bits (994), Expect = 3.120e-132
Identity = 189/262 (72.14%), Postives = 219/262 (83.59%), Query Frame = 1
Query:    1 FALFPHLTVRDNVAYSLHISGVSRSEAADRAGKLLDLVQLSAFGDRRIGQLSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVGPPQDIYHKPENAFVADFIGKANFFDGVTEPGGIRIGATHLVADPHFVGGSPVRMAIRPERACLDEEPGANRLPAKITFVRDLGPIREYHLETAVGRMVVEYAAGEGGKIFHVGDTTEVRLPPDALHIFP 786
            FALFPH +VR+NVAYSL I G+ ++ A  +A  LL+ VQL  FGDRRIG+LSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMAD IVVMSNGR+EQ+ PPQ+IYH+P N FVADFIGKANFFDG+   GG+ +G THL    +F  GSPV++AIRPERA +D+E GANR+ AK+ FVRDLGP+REYHL++ +G M+VEYA GE G     GD T VRLPP+A+ +FP
Sbjct:   85 FALFPHYSVRENVAYSLVIGGMGKAAACKKANALLETVQLGGFGDRRIGELSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADQIVVMSNGRIEQIAPPQEIYHQPANTFVADFIGKANFFDGIVVEGGVTVGDTHLTTQANFQSGSPVQIAIRPERAAMDDEGGANRVAAKVMFVRDLGPLREYHLQSDIGPMIVEYAVGETGPTLSTGDATTVRLPPEAIQVFP 346          
BLAST of mRNA_C-australica_Contig_9892.1.1 vs. uniprot
Match: UPI000BAACE4A (ABC transporter ATP-binding protein n=1 Tax=Actibacterium ureilyticum TaxID=1590614 RepID=UPI000BAACE4A)

HSP 1 Score: 386 bits (991), Expect = 7.510e-132
Identity = 190/262 (72.52%), Postives = 220/262 (83.97%), Query Frame = 1
Query:    1 FALFPHLTVRDNVAYSLHISGVSRSEAADRAGKLLDLVQLSAFGDRRIGQLSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVGPPQDIYHKPENAFVADFIGKANFFDGVTEPGGIRIGATHLVADPHFVGGSPVRMAIRPERACLDEEPGANRLPAKITFVRDLGPIREYHLETAVGRMVVEYAAGEGGKIFHVGDTTEVRLPPDALHIFP 786
            FALFPH +VR+NVAYSL I G++R+ A ++A  LL+ VQL  FGDRRIG+LSGGQRQRVAIARALAQEP+VFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMAD IVVMSNGRVEQ+  PQ++YH+P NAFVADFIGKANFFDG    G +++G   L A   F  GSPVR+AIRPERAC+D++PG NR+ A++ FVRDLGP+REYHL++ +G ++VEYAAGE G     GD T VRLPPDAL IFP
Sbjct:   84 FALFPHYSVRENVAYSLTIGGMARARAHEKADALLETVQLGGFGDRRIGELSGGQRQRVAIARALAQEPQVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADKIVVMSNGRVEQIAQPQEVYHRPANAFVADFIGKANFFDGTYRDGAVQVGGVQLRASAQFRSGSPVRVAIRPERACIDDDPGDNRIAARVMFVRDLGPLREYHLQSDIGPIIVEYAAGETGPTLATGDETTVRLPPDALQIFP 345          
BLAST of mRNA_C-australica_Contig_9892.1.1 vs. uniprot
Match: A0A6P1T594_9RHOB (ATP-binding cassette domain-containing protein n=1 Tax=Rhodobacteraceae bacterium 9Alg 56 TaxID=2683284 RepID=A0A6P1T594_9RHOB)

HSP 1 Score: 378 bits (971), Expect = 9.090e-129
Identity = 193/269 (71.75%), Postives = 226/269 (84.01%), Query Frame = 1
Query:    1 FALFPHLTVRDNVAYSLHISGVSRSEAADRAGKLLDLVQLSAFGDRRIGQLSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVGPPQDIYHKPENAFVADFIGKANFFDGVTEPGGIRIGATHLVADP--HFVGGSPVRMAIRPERACLDEEPGA-NRLPAKITFVRDLGPIREYHLETAVGRMVVEYAAGEGGKIFHVGDTTEVRLPPDALHIFPDPTA 798
            FALFPHL V +NVAY+L I+GV+++EAA+RA +LLDLVQL  F  RRIG+LSGGQRQRVAIARALAQEP++FLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMAD+IVVMS G VEQVGPPQ IYH+P NAFVADFIG+ANFFDGV E G +RIG  +L   P   F+ G+ VR+A RPE+ACLDE   A NRLPA+ITFVRDLGP+R+ HLET +G ++VEYA GE  + F VGD+ ++ LPP+AL +FP+  A
Sbjct:   84 FALFPHLDVSENVAYALTIAGVAKAEAAERAHRLLDLVQLQPFASRRIGELSGGQRQRVAIARALAQEPDIFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADTIVVMSRGSVEQVGPPQTIYHRPANAFVADFIGRANFFDGVVENGTVRIGPRNLSVSPAASFIDGAAVRVACRPEKACLDESDSATNRLPARITFVRDLGPVRDIHLETDIGPIIVEYAIGESARPFAVGDSIDLILPPEALQVFPEEAA 352          
BLAST of mRNA_C-australica_Contig_9892.1.1 vs. uniprot
Match: A0A2D5J224_9RHOB (Polyamine ABC transporter ATP-binding protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2D5J224_9RHOB)

HSP 1 Score: 376 bits (966), Expect = 5.780e-128
Identity = 200/277 (72.20%), Postives = 225/277 (81.23%), Query Frame = 1
Query:    1 FALFPHLTVRDNVAYSLHISGVSRSEAADRAGKLLDLVQLSAFGDRRIGQLSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVGPPQDIYHKPENAFVADFIGKANFFDGVTEPGGIRIGATHLV--ADPHFVGGSPVRMAIRPERACLDEEPGANRLPAKITFVRDLGPIREYHLETAVGRMVVEYAAGEGGKIFHVGDTTEVRLPPDALHIFPDPTAHDALAMAAE 825
            FALFPHL+VR+NVAYSL ISGVSR++A  RA  LLDLVQL AFGDRRIG+LSGGQRQRVAIARALAQEP+VFLLDEPMSALDAKLREEMQVELR+LQQRLGITTIVVTHDQREAMTMAD IVVMSNGRVEQ G PQ+IYH+P NAFVADFIG+ANFFDG+   G I++G   L   A  +F  GS VR+AIRPE A LD     N LPAK+TFVRDLGP+R+ +L+T +G M+VEYA GE   +F VG T  VRLPPD LH+FP     D  AMAA+
Sbjct:   84 FALFPHLSVRENVAYSLTISGVSRTDAWSRADTLLDLVQLGAFGDRRIGELSGGQRQRVAIARALAQEPDVFLLDEPMSALDAKLREEMQVELRMLQQRLGITTIVVTHDQREAMTMADRIVVMSNGRVEQSGSPQEIYHRPANAFVADFIGRANFFDGIAGTGRIQLGEVSLTVTAPLNFQPGSAVRIAIRPEMAALDAAQPDNVLPAKVTFVRDLGPVRDIYLDTPLGPMIVEYALGEEAPVFAVGQTVPVRLPPDHLHVFPA----DIPAMAAQ 356          
BLAST of mRNA_C-australica_Contig_9892.1.1 vs. uniprot
Match: A0A2M8W5W8_9RHOB (Putative spermidine/putrescine transport system ATP-binding protein n=1 Tax=Yoonia maricola TaxID=420999 RepID=A0A2M8W5W8_9RHOB)

HSP 1 Score: 371 bits (952), Expect = 6.100e-126
Identity = 187/262 (71.37%), Postives = 215/262 (82.06%), Query Frame = 1
Query:    1 FALFPHLTVRDNVAYSLHISGVSRSEAADRAGKLLDLVQLSAFGDRRIGQLSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRLGITTIVVTHDQREAMTMADSIVVMSNGRVEQVGPPQDIYHKPENAFVADFIGKANFFDGVTEPGGIRIGATHLVADPHFVGGSPVRMAIRPERACLDEEPGANRLPAKITFVRDLGPIREYHLETAVGRMVVEYAAGEGGKIFHVGDTTEVRLPPDALHIFP 786
            FALFPH TVR+NVAYSL I G+ +  A ++A  LL  VQL+ FGDRR+G+LSGGQRQRVAIARALAQEP+VFLLDEPMSALDAKLRE+MQVELRLLQQRLGITTIVVTHDQREAMTMAD+IVVMSNGRVEQV PPQ+IYH+P NAFVADFIGKANFFDG+ + GG+ IG+  L    +F   SPVR+AIRPE ACL  EPG NR+PA + FVRDLGP+REYHL T +G ++VEYAAG   +    GD T V LP DAL ++P
Sbjct:   84 FALFPHYTVRENVAYSLIIGGMPKPTALEKAESLLATVQLNGFGDRRVGELSGGQRQRVAIARALAQEPQVFLLDEPMSALDAKLREDMQVELRLLQQRLGITTIVVTHDQREAMTMADTIVVMSNGRVEQVAPPQEIYHRPTNAFVADFIGKANFFDGLYKSGGVMIGSQALETPANFAPDSPVRLAIRPESACLAREPGQNRIPAVVGFVRDLGPVREYHLTTDIGPIIVEYAAGSDEQKLTAGDKTLVHLPADALRVYP 345          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9892.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A222E8C0_9RHOB2.350e-19399.64Glycerol-3-phosphate transporter ATP-binding subun... [more]
A0A6F8Q8H7_9RHOB2.340e-15582.91ABC transporter ATP-binding protein n=7 Tax=Roseob... [more]
UPI000FDC1AB07.310e-14579.64ABC transporter ATP-binding protein n=1 Tax=Rhodob... [more]
A0A2E3P8Z7_9RHOB4.850e-13474.73Polyamine ABC transporter ATP-binding protein n=1 ... [more]
UPI001CBFC1E64.570e-13374.05ABC transporter ATP-binding protein n=1 Tax=Tateya... [more]
A0A640VWR5_9RHOB3.120e-13272.14Spermidine/putrescine ABC transporter ATP-binding ... [more]
UPI000BAACE4A7.510e-13272.52ABC transporter ATP-binding protein n=1 Tax=Actiba... [more]
A0A6P1T594_9RHOB9.090e-12971.75ATP-binding cassette domain-containing protein n=1... [more]
A0A2D5J224_9RHOB5.780e-12872.20Polyamine ABC transporter ATP-binding protein n=1 ... [more]
A0A2M8W5W8_9RHOB6.100e-12671.37Putative spermidine/putrescine transport system AT... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9892contigC-australica_Contig_9892:2..829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1089551.KE386572_gene1767
PFAMsABC_tran,TOBE_2
Model size828
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02052
KEGG TC3.A.1.11
KEGG Pathwayko02024,map02024
KEGG ModuleM00193
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.24e-82
EggNOG OGsCOG3842@1|root,COG3842@2|Bacteria,1MU3I@1224|Proteobacteria,2TQMJ@28211|Alphaproteobacteria
DescriptionPart of the ABC transporter complex PotABCD involved in spermidine putrescine import. Responsible for energy coupling to the transport system
Cds size828
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588855.6263874-CDS-C-australica_Contig_9892:1..8291682588855.6263874-CDS-C-australica_Contig_9892:1..829Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9892 2..829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9892.1.1prot_C-australica_Contig_9892.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9892 2..829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9892.1.1

>prot_C-australica_Contig_9892.1.1 ID=prot_C-australica_Contig_9892.1.1|Name=mRNA_C-australica_Contig_9892.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=276bp
FALFPHLTVRDNVAYSLHISGVSRSEAADRAGKLLDLVQLSAFGDRRIGQ
LSGGQRQRVAIARALAQEPEVFLLDEPMSALDAKLREEMQVELRLLQQRL
GITTIVVTHDQREAMTMADSIVVMSNGRVEQVGPPQDIYHKPENAFVADF
IGKANFFDGVTEPGGIRIGATHLVADPHFVGGSPVRMAIRPERACLDEEP
GANRLPAKITFVRDLGPIREYHLETAVGRMVVEYAAGEGGKIFHVGDTTE
VRLPPDALHIFPDPTAHDALAMAAE*
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mRNA from alignment at C-australica_Contig_9892:2..829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9892.1.1 ID=mRNA_C-australica_Contig_9892.1.1|Name=mRNA_C-australica_Contig_9892.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=828bp|location=Sequence derived from alignment at C-australica_Contig_9892:2..829+ (Chrysoparadoxa australica CS_1217)
TTTGCCCTTTTCCCGCATCTGACGGTGCGGGACAACGTGGCCTATTCACT GCATATCTCAGGCGTTTCTCGGTCAGAGGCGGCGGATCGGGCAGGCAAAT TGCTGGATCTGGTGCAACTGTCGGCCTTTGGCGACCGCCGGATTGGCCAG CTGTCGGGCGGGCAGCGCCAGCGCGTCGCGATTGCCCGCGCGCTGGCGCA GGAACCAGAGGTATTCCTGCTGGACGAACCGATGTCGGCGCTGGACGCCA AGTTGCGCGAAGAGATGCAGGTGGAACTGCGGCTACTGCAACAGCGGCTG GGCATCACCACCATCGTCGTCACCCATGATCAACGCGAGGCCATGACCAT GGCCGATAGCATCGTCGTCATGTCCAACGGGCGGGTGGAACAGGTGGGCC CGCCGCAGGACATCTATCACAAGCCGGAAAACGCCTTTGTCGCAGATTTC ATCGGCAAGGCGAACTTTTTTGACGGGGTGACAGAGCCGGGCGGTATCCG CATCGGTGCTACACATCTGGTGGCTGATCCGCATTTTGTCGGCGGTTCCC CCGTGCGCATGGCGATCCGACCGGAACGCGCCTGTCTGGATGAGGAACCG GGCGCAAACCGGTTGCCGGCCAAGATCACCTTTGTGCGCGATCTTGGCCC GATCCGGGAATACCACCTCGAGACTGCGGTGGGCCGGATGGTCGTGGAGT ACGCTGCAGGTGAGGGCGGAAAGATCTTTCATGTCGGCGATACGACAGAG GTTCGGCTGCCCCCTGATGCCTTGCATATCTTCCCCGATCCAACGGCCCA CGATGCGCTGGCCATGGCGGCCGAATGA
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Coding sequence (CDS) from alignment at C-australica_Contig_9892:2..829+

>mRNA_C-australica_Contig_9892.1.1 ID=mRNA_C-australica_Contig_9892.1.1|Name=mRNA_C-australica_Contig_9892.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=828bp|location=Sequence derived from alignment at C-australica_Contig_9892:2..829+ (Chrysoparadoxa australica CS_1217)
TTTGCCCTTTTCCCGCATCTGACGGTGCGGGACAACGTGGCCTATTCACT
GCATATCTCAGGCGTTTCTCGGTCAGAGGCGGCGGATCGGGCAGGCAAAT
TGCTGGATCTGGTGCAACTGTCGGCCTTTGGCGACCGCCGGATTGGCCAG
CTGTCGGGCGGGCAGCGCCAGCGCGTCGCGATTGCCCGCGCGCTGGCGCA
GGAACCAGAGGTATTCCTGCTGGACGAACCGATGTCGGCGCTGGACGCCA
AGTTGCGCGAAGAGATGCAGGTGGAACTGCGGCTACTGCAACAGCGGCTG
GGCATCACCACCATCGTCGTCACCCATGATCAACGCGAGGCCATGACCAT
GGCCGATAGCATCGTCGTCATGTCCAACGGGCGGGTGGAACAGGTGGGCC
CGCCGCAGGACATCTATCACAAGCCGGAAAACGCCTTTGTCGCAGATTTC
ATCGGCAAGGCGAACTTTTTTGACGGGGTGACAGAGCCGGGCGGTATCCG
CATCGGTGCTACACATCTGGTGGCTGATCCGCATTTTGTCGGCGGTTCCC
CCGTGCGCATGGCGATCCGACCGGAACGCGCCTGTCTGGATGAGGAACCG
GGCGCAAACCGGTTGCCGGCCAAGATCACCTTTGTGCGCGATCTTGGCCC
GATCCGGGAATACCACCTCGAGACTGCGGTGGGCCGGATGGTCGTGGAGT
ACGCTGCAGGTGAGGGCGGAAAGATCTTTCATGTCGGCGATACGACAGAG
GTTCGGCTGCCCCCTGATGCCTTGCATATCTTCCCCGATCCAACGGCCCA
CGATGCGCTGGCCATGGCGGCCGAATGA
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