mRNA_C-australica_Contig_989.4.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_989.4.1
Unique NamemRNA_C-australica_Contig_989.4.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
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BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A7S2CML5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CML5_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.730e-49
Identity = 75/102 (73.53%), Postives = 93/102 (91.18%), Query Frame = 2 
Query:   86 MSVADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
            +++A A K+E++LDL KY+D+GVRVKFQGGRE+ G+LKGYDQLVNLVLDECVEY+RDP DPY++TD TR +G+VVCRGTQVSLI+P+DGTEEIANPF+  EE
Sbjct:   20 VAMAQASKKESILDLNKYVDQGVRVKFQGGREVQGILKGYDQLVNLVLDECVEYLRDPDDPYRITDDTRTLGMVVCRGTQVSLISPMDGTEEIANPFVAAEE 121
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BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A7S2ST35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST35_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.010e-48
Identity = 73/95 (76.84%), Postives = 89/95 (93.68%), Query Frame = 2 
Query:  107 KRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
            ++E++LDL KY+D+GVRVKFQGGRE+HG+LKGYDQLVNLVLDE VEY+RDP DPY++T+ TR +G+VVCRGTQVSLI+P+DGTEEIANPFLQ EE
Sbjct:    5 RKESILDLGKYIDQGVRVKFQGGREVHGVLKGYDQLVNLVLDEAVEYLRDPEDPYRITEQTRTLGMVVCRGTQVSLISPMDGTEEIANPFLQVEE 99
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BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A836C8L6_9STRA (Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L6_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.430e-48
Identity = 75/95 (78.95%), Postives = 88/95 (92.63%), Query Frame = 2 
Query:  104 KKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEE 388
            +K+ENVLDL KYLD+GVRVKFQGGRE+ G+LKGYDQLVNLVLD+CVE+IRDP+DPY++TD TR +GLVVCRGTQVSLI+P+DG EEIANPFL  E
Sbjct:    4 RKKENVLDLTKYLDQGVRVKFQGGREVSGVLKGYDQLVNLVLDDCVEFIRDPSDPYRVTDETRTLGLVVCRGTQVSLISPMDGMEEIANPFLAAE 98
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BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A7S2XWT1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWT1_9STRA)

HSP 1 Score: 160 bits (406), Expect = 9.270e-48
Identity = 76/100 (76.00%), Postives = 89/100 (89.00%), Query Frame = 2 
Query:   92 VADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
            +A   KRENVLDL KY+D+GVRVKFQGGRE+HG+LKG+DQLVNLVLDE VE++RDP DPY++T+ TR +GLVVCRG QVSLI+PVDG EEIANPFLQ EE
Sbjct:    1 MATGGKRENVLDLNKYVDQGVRVKFQGGREVHGILKGFDQLVNLVLDETVEFLRDPDDPYRITNETRTLGLVVCRGPQVSLISPVDGMEEIANPFLQMEE 100
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BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: D8LPU6_ECTSI (Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPU6_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 8.420e-46
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 2 
Query:   86 MSVADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEE 388
            M+    K+RE VLDL KYLD+GVRVK QGGRE+HG+LKG+D LVN+VLDEC+E+IRDP DPYKLT+ TR++GLVVCRGTQVSLI+P DG EEI NPF+  E
Sbjct:    1 MAEVKKKERETVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPTDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFMAPE 101
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BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: K3WSH5_GLOUD (Sm domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSH5_GLOUD)

HSP 1 Score: 154 bits (388), Expect = 6.180e-45
Identity = 69/99 (69.70%), Postives = 86/99 (86.87%), Query Frame = 2 
Query:   95 ADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
            + A +++ +LDL KY+D+ VRVKF GGRE+HG LKGYDQLVNLVLD+CVE++RDP D Y+LT+ TR++GLVVCRGT V LI+PVDGTEEI NPFLQ+EE
Sbjct:   12 SSAPRKDPILDLGKYIDQPVRVKFHGGREVHGFLKGYDQLVNLVLDDCVEFLRDPNDEYRLTEETRNVGLVVCRGTSVMLISPVDGTEEIPNPFLQQEE 110
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BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A7S2BSU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSU7_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.880e-44
Identity = 66/95 (69.47%), Postives = 86/95 (90.53%), Query Frame = 2 
Query:  107 KRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
            K+E++LD+ KY+D+GVRVKFQGGRE+ G LKG+DQLVNLVLD+C E++RDP DPY++TD +R +G+VVCRGTQVSLI+PVDGTEEI+NPF+ + E
Sbjct:   17 KKESILDINKYIDQGVRVKFQGGREVTGTLKGFDQLVNLVLDDCTEFLRDPEDPYRITDESRTLGMVVCRGTQVSLISPVDGTEEISNPFIAQTE 111
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BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A8K1CTC3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTC3_PYTOL)

HSP 1 Score: 152 bits (383), Expect = 5.990e-44
Identity = 69/95 (72.63%), Postives = 84/95 (88.42%), Query Frame = 2 
Query:  107 KRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
            +R+ +LDLAKY+D+ VRVKF GGRE+HG LKGYDQLVNLVLD+CVEY+RDP+D  ++TD TR +GLVVCRGT V+LI+PVDGTEEI NPFL +EE
Sbjct:   33 RRDQILDLAKYIDQPVRVKFFGGREVHGFLKGYDQLVNLVLDDCVEYLRDPSDASRVTDETRKVGLVVCRGTSVTLISPVDGTEEIPNPFLPQEE 127
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BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: A0A4D9CX90_9STRA (Sm domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX90_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.950e-43
Identity = 68/100 (68.00%), Postives = 86/100 (86.00%), Query Frame = 2 
Query:   92 VADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
            V  A K++ VLDL KYLD+ V V+FQGGRE+ G+L+G+DQL+NLVLDE  E +RDP DPY+LTD TR++GLV+CRGTQVSLI+PV+GTEEIANPF+Q E+
Sbjct:    4 VVQATKKDTVLDLNKYLDKAVCVRFQGGREVTGILRGFDQLINLVLDESKETLRDPLDPYRLTDETRELGLVICRGTQVSLISPVEGTEEIANPFIQAED 103
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BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Match: F0WMT1_9STRA (U6 snRNAassociated Smlike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMT1_9STRA)

HSP 1 Score: 149 bits (375), Expect = 7.610e-43
Identity = 67/95 (70.53%), Postives = 83/95 (87.37%), Query Frame = 2 
Query:  107 KRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDECVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQEEE 391
            ++EN+LDL KY+D  V VKF+GGR++HG LKGYDQLVNLVLDEC+E++R+  D Y+L+D TR IGLVVCRGT V LI+PVDGTEEIANPF+Q+EE
Sbjct:   25 RKENILDLDKYIDHSVCVKFRGGRQVHGTLKGYDQLVNLVLDECIEFLREDNDSYRLSDKTRSIGLVVCRGTTVMLISPVDGTEEIANPFIQQEE 119
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_989.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2CML5_9STRA1.730e-4973.53Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2ST35_9STRA1.010e-4876.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836C8L6_9STRA1.430e-4878.95Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2XWT1_9STRA9.270e-4876.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LPU6_ECTSI8.420e-4671.29Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879... [more]
K3WSH5_GLOUD6.180e-4569.70Sm domain-containing protein n=1 Tax=Globisporangi... [more]
A0A7S2BSU7_9STRA3.880e-4469.47Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8K1CTC3_PYTOL5.990e-4472.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9CX90_9STRA4.950e-4368.00Sm domain-containing protein n=1 Tax=Nannochlorops... [more]
F0WMT1_9STRA7.610e-4370.53U6 snRNAassociated Smlike protein putative n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_989contigC-australica_Contig_989:9375..10593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPU6
Preferred nameLSM7
PFAMsLSM
Model size611
Max annot lvl2759|Eukaryota
KEGG koko:K12626,ko:K16353
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005688,GO:0005689,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0046982,GO:0046983,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904
Exons4
Evalue1.01e-47
EggNOG OGsKOG1781@1|root,KOG1781@2759|Eukaryota
Ec32 ortholog descriptionSm-like protein LSm7
Ec32 orthologEc-18_002540.1
Descriptionnuclear-transcribed mRNA catabolic process
Cds size315
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019,ko03041,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_989.4.1prot_C-australica_Contig_989.4.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_989 9644..10382 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588855.3592186-UTR-C-australica_Contig_989:9374..94131682588855.3592186-UTR-C-australica_Contig_989:9374..9413Chrysoparadoxa australica CS_1217UTRC-australica_Contig_989 9375..9413 +
1682588855.3699887-UTR-C-australica_Contig_989:9597..96431682588855.3699887-UTR-C-australica_Contig_989:9597..9643Chrysoparadoxa australica CS_1217UTRC-australica_Contig_989 9598..9643 +
1682588855.4189124-UTR-C-australica_Contig_989:10382..105931682588855.4189124-UTR-C-australica_Contig_989:10382..10593Chrysoparadoxa australica CS_1217UTRC-australica_Contig_989 10383..10593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588855.380173-CDS-C-australica_Contig_989:9643..97571682588855.380173-CDS-C-australica_Contig_989:9643..9757Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 9644..9757 +
1682588855.3902152-CDS-C-australica_Contig_989:9884..100101682588855.3902152-CDS-C-australica_Contig_989:9884..10010Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 9885..10010 +
1682588855.4005964-CDS-C-australica_Contig_989:10307..103821682588855.4005964-CDS-C-australica_Contig_989:10307..10382Chrysoparadoxa australica CS_1217CDSC-australica_Contig_989 10308..10382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_989.4.1

>prot_C-australica_Contig_989.4.1 ID=prot_C-australica_Contig_989.4.1|Name=mRNA_C-australica_Contig_989.4.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=105bp
MSVADAKKRENVLDLAKYLDRGVRVKFQGGREIHGLLKGYDQLVNLVLDE
CVEYIRDPADPYKLTDATRDIGLVVCRGTQVSLIAPVDGTEEIANPFLQE
EEGS*
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mRNA from alignment at C-australica_Contig_989:9375..10593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_989.4.1 ID=mRNA_C-australica_Contig_989.4.1|Name=mRNA_C-australica_Contig_989.4.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=1219bp|location=Sequence derived from alignment at C-australica_Contig_989:9375..10593+ (Chrysoparadoxa australica CS_1217)
GTCAGGTTGAGAGAAATAGAGTTACGCGCGTAGATACAGGTGGTGTAGGT
AGTGTGGGTCCAAAGTAGCTCCCCAGCGCGTTGCATTGCCCGACCCCACC
AAAGATACAAGCTTTCCCAGCTCCATCCTCGTACCCATCGCCCTCAACCC
CCGTAACCCTCAGCGCTGCCACCCGCTAATACGCTTAGAGTAAGGTAGAG
GACTAACTCAGCTATCTCTCCAGGCTTCTAGGGCAAGGCTGCAAAGGGGT
GCCCCGGCAGCCACTGGTGATGAGTGTAGCTGATGCTAAGAAGAGGGAAA
ATGTCCTAGATCTTGCCAAGTACCTGGACAGAGGAGTTAGGGTCAAGTTC
CAAGGAGGCAGGGAGATCCACGGACTCCTCAAGGTTAGCCTCTTAGGCTC
TTGTATTGCCTGGTCACTGAGTAACCTAATCTCTTCTCTCTGTTCTCTCT
GTTCTCTCTGTGATCATGACAGTCTAACTCATGGGTTTGCTTTGTCTTGT
GCACTTTCAGGGTTATGATCAGCTAGTTAACTTGGTGCTGGATGAGTGCG
TGGAATACATTAGGGACCCTGCAGACCCATACAAGCTCACTGATGCTACC
AGGGATATTGGCCTGGTGGTGTGCAGAGGGACTCAGGTAGGTGGTAGGCG
GTAGGTGGGTTACGATGAATGAGATATGCCTGGAATGAGAGAGAGGATTG
GCTATTGGATGCTGGCTAGTGATGTGATACATTGGAAGGAGCTGCATGAG
ATGCAGAGGGTGGAGGGTGAATAACGCACACCATGCTCATCAAGTTATCG
CTTTGTTTCCTTTAGAATGAGTTCCATCCAGGCTGCTATCCCTAACTCCT
ACAAAATCCCTCTGCTGTTCTCCCGTGTTCTGTTCCTTAACCATTCCTCA
CAAGTACTCAATTAGCCACTCCTTCTCGAGTAGGTGAGTTTAATAGCTCC
TGTGGATGGGACGGAAGAGATTGCGAACCCGTTCTTGCAAGAGGAAGAAG
GCTCTTGAGGGAACCTTTTATGGGATACTCTTGCATTGCAATAATAGAGA
GTTTTTTGTCCTATTTTGCTCCTGAACTGACGAACAACCTTCGTCTTTGC
TGCATTTTTAAGCTCGGGGAACTTATCGCGAGGGATCCTTATCACGAATT
CGCGATAGGTATTGAGGCGACCTCAAGTCGAAAACCCTTCGCCCCCAATC
TGAACGTAGAGAAATAAAT
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Coding sequence (CDS) from alignment at C-australica_Contig_989:9375..10593+

>mRNA_C-australica_Contig_989.4.1 ID=mRNA_C-australica_Contig_989.4.1|Name=mRNA_C-australica_Contig_989.4.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=315bp|location=Sequence derived from alignment at C-australica_Contig_989:9375..10593+ (Chrysoparadoxa australica CS_1217)
ATGAGTGTAGCTGATGCTAAGAAGAGGGAAAATGTCCTAGATCTTGCCAA
GTACCTGGACAGAGGAGTTAGGGTCAAGTTCCAAGGAGGCAGGGAGATCC
ACGGACTCCTCAAGGGTTATGATCAGCTAGTTAACTTGGTGCTGGATGAG
TGCGTGGAATACATTAGGGACCCTGCAGACCCATACAAGCTCACTGATGC
TACCAGGGATATTGGCCTGGTGGTGTGCAGAGGGACTCAGGTGAGTTTAA
TAGCTCCTGTGGATGGGACGGAAGAGATTGCGAACCCGTTCTTGCAAGAG
GAAGAAGGCTCTTGA
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