mRNA_C-australica_Contig_9876.1.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_9876.1.1
Unique NamemRNA_C-australica_Contig_9876.1.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_9876.1.1 vs. uniprot
Match: A0A423PQX2_9GAMM (DNA primase n=2 Tax=Salinisphaera TaxID=180541 RepID=A0A423PQX2_9GAMM)

HSP 1 Score: 409 bits (1050), Expect = 2.570e-137
Identity = 196/282 (69.50%), Postives = 230/282 (81.56%), Query Frame = 1
Query:    4 LKKAGREYQACCPFHDEKTPSFTVSPAKQFYHCFGCGAHGTALSFLMEYERLEFREAVEALAGQAGMTIPEEARGAGPDADTQKPLFAVLEQAGRLYQNQLRQSPAAIDYLKSRGITGATAKAFGIGYAPDSWDFLRGQVRDRQAAVTAGMLIEKDNGHAYDRFRNRIMFPIRDGRGRVIGFGGRALGDDPAKYLNSPETPLFHKGRSLYGLFEARQALREIPRMLLVEGYMDVVALAQHGFANAVATLGTATTAEHQNALVRATDELVFCFAGDRAGRDAA 849
            LKK+G EY ACCPFHDEKTPSFTVSP KQFYHCFGCGAHGTA+SFLMEY+RLEFR+AVE LA Q+G+ IPEEA  A      ++PLF V+  A R Y++ LR++PAAIDYLK RG++GA AK +G+G+APD+WD L G +RDR +A  AG+LIE+D+G  +DRFRNR+MFPIRD RGR + FGGR LGDD AKYLNSPETPLFHK   +YGLFEARQALR+IPR+L+VEGYMDV+ALAQHGF NAVATLGTATT  H   L R T E++FCF GD AG  AA
Sbjct:   28 LKKSGHEYAACCPFHDEKTPSFTVSPTKQFYHCFGCGAHGTAISFLMEYDRLEFRDAVEVLAQQSGLEIPEEAATANESGPRREPLFEVMALADRRYRSALRETPAAIDYLKRRGVSGAMAKTYGLGFAPDAWDTLAGALRDRASAHRAGLLIERDSGGYFDRFRNRLMFPIRDTRGRTVAFGGRTLGDDKAKYLNSPETPLFHKSDHMYGLFEARQALRDIPRLLVVEGYMDVIALAQHGFPNAVATLGTATTQSHLTTLFRHTSEVLFCFDGDAAGVRAA 309          
BLAST of mRNA_C-australica_Contig_9876.1.1 vs. uniprot
Match: A0A2E0IY76_9GAMM (DNA primase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E0IY76_9GAMM)

HSP 1 Score: 408 bits (1048), Expect = 5.150e-137
Identity = 196/282 (69.50%), Postives = 228/282 (80.85%), Query Frame = 1
Query:    4 LKKAGREYQACCPFHDEKTPSFTVSPAKQFYHCFGCGAHGTALSFLMEYERLEFREAVEALAGQAGMTIPEEARGAGPDADTQKPLFAVLEQAGRLYQNQLRQSPAAIDYLKSRGITGATAKAFGIGYAPDSWDFLRGQVRDRQAAVTAGMLIEKDNGHAYDRFRNRIMFPIRDGRGRVIGFGGRALGDDPAKYLNSPETPLFHKGRSLYGLFEARQALREIPRMLLVEGYMDVVALAQHGFANAVATLGTATTAEHQNALVRATDELVFCFAGDRAGRDAA 849
            LKK+G E+ ACCPFHDEKTPSFTVSP KQFYHCFGCGAHGTA+SFLMEY+RLEFR+AVE LA  AG+ +P++A+ + P    + PLF  +  A R YQ+ LR+SPA IDYLK RG+TGA AK +G+G+APDSWD L  ++RDR AA  AG+LIE+DNG  +DRFRNR+MFPIRD RGR I FGGR LGDD AKYLNSPETPLFHK   +YGLFEARQALR++PR+L+VEGYMDV+ALAQHGF NAVATLGTATT  H   L R T E+VFCF GD AG  AA
Sbjct:   28 LKKSGHEFAACCPFHDEKTPSFTVSPTKQFYHCFGCGAHGTAISFLMEYDRLEFRDAVEVLAQNAGLELPKDAQDSAPAGPPRDPLFDAMAFADRFYQSALRRSPAVIDYLKQRGVTGAMAKQYGLGHAPDSWDGLTRELRDRPAAERAGLLIERDNGGYFDRFRNRLMFPIRDTRGRTIAFGGRTLGDDKAKYLNSPETPLFHKSDHMYGLFEARQALRDLPRLLVVEGYMDVIALAQHGFPNAVATLGTATTESHLTTLFRHTQEVVFCFDGDAAGVRAA 309          
BLAST of mRNA_C-australica_Contig_9876.1.1 vs. uniprot
Match: U2E1D3_9GAMM (DNA primase n=2 Tax=Salinisphaera TaxID=180541 RepID=U2E1D3_9GAMM)

HSP 1 Score: 406 bits (1043), Expect = 2.930e-136
Identity = 193/283 (68.20%), Postives = 228/283 (80.57%), Query Frame = 1
Query:    1 PLKKAGREYQACCPFHDEKTPSFTVSPAKQFYHCFGCGAHGTALSFLMEYERLEFREAVEALAGQAGMTIPEEARGAGPDADTQKPLFAVLEQAGRLYQNQLRQSPAAIDYLKSRGITGATAKAFGIGYAPDSWDFLRGQVRDRQAAVTAGMLIEKDNGHAYDRFRNRIMFPIRDGRGRVIGFGGRALGDDPAKYLNSPETPLFHKGRSLYGLFEARQALREIPRMLLVEGYMDVVALAQHGFANAVATLGTATTAEHQNALVRATDELVFCFAGDRAGRDAA 849
            PLKK+G +Y ACCPFHDEKTPSFTVSP KQFY+CFGCGAHGTA+SFLMEY+RLEFR+AV+ LA  AG+ IPE+A+   P    + PLF  +  A R YQ QLR++P  IDYLK+RG++GA AK +G+G+APDSWD L  Q+RD  +   AG+LIE+D G  +DRFRNR+MFPIRD RGR I FGGR LGDD AKYLNSPETPLFHK   +YGLFEARQA+R++PR+L+VEGYMDV+ALAQHGFANAVATLGTATTA H   L R T+E+VFCF GD AG  AA
Sbjct:   27 PLKKSGTDYAACCPFHDEKTPSFTVSPTKQFYYCFGCGAHGTAISFLMEYDRLEFRDAVDVLAQNAGLEIPEDAQTQAPSGPPRDPLFDAMNLADRFYQTQLRRNPDVIDYLKTRGVSGAMAKQYGLGFAPDSWDALTRQLRDSASGARAGLLIERDGGGFFDRFRNRLMFPIRDTRGRTIAFGGRTLGDDKAKYLNSPETPLFHKSDHMYGLFEARQAMRDLPRLLVVEGYMDVIALAQHGFANAVATLGTATTASHLTTLFRHTEEVVFCFDGDAAGVRAA 309          
BLAST of mRNA_C-australica_Contig_9876.1.1 vs. uniprot
Match: A0A2E5FZG4_9GAMM (DNA primase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E5FZG4_9GAMM)

HSP 1 Score: 398 bits (1023), Expect = 3.460e-133
Identity = 194/282 (68.79%), Postives = 224/282 (79.43%), Query Frame = 1
Query:    4 LKKAGREYQACCPFHDEKTPSFTVSPAKQFYHCFGCGAHGTALSFLMEYERLEFREAVEALAGQAGMTIPEEARGAGPDADTQKPLFAVLEQAGRLYQNQLRQSPAAIDYLKSRGITGATAKAFGIGYAPDSWDFLRGQVRDRQAAVTAGMLIEKDNGHAYDRFRNRIMFPIRDGRGRVIGFGGRALGDDPAKYLNSPETPLFHKGRSLYGLFEARQALREIPRMLLVEGYMDVVALAQHGFANAVATLGTATTAEHQNALVRATDELVFCFAGDRAGRDAA 849
            LKK GREY ACCPFHDE TPSFTVSP KQFYHCFGCGAHG+A+SFLMEY+RLEFR+AV+ LA  AGM +PEEA    P    ++PL+ VL  A R YQ+ LR+S A I YLK RG++G  AK +G+GYA DSWD L G + D+ AA  AGMLIE+D+G  +DRFRNR+MFPIRD RGR I FGGRALGDD AKYLNSPETPLFHK   +YGL+EARQA+R++PR+L+VEGYMDV+ALAQHGF NAVATLGTATTA H   L R T E+VFCF GD AG  AA
Sbjct:   28 LKKTGREYSACCPFHDENTPSFTVSPTKQFYHCFGCGAHGSAISFLMEYDRLEFRDAVDVLAQAAGMELPEEAVEDAPAGPPREPLYDVLRIADRHYQSALRKSDATIAYLKKRGVSGDMAKRYGLGYAADSWDALTGIIGDKPAAARAGMLIERDSGGYFDRFRNRLMFPIRDTRGRTIAFGGRALGDDKAKYLNSPETPLFHKSDQMYGLYEARQAMRDLPRLLVVEGYMDVIALAQHGFPNAVATLGTATTASHLTTLFRHTQEVVFCFDGDTAGTRAA 309          
BLAST of mRNA_C-australica_Contig_9876.1.1 vs. uniprot
Match: A0A2D4S7R9_9GAMM (DNA primase n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4S7R9_9GAMM)

HSP 1 Score: 395 bits (1015), Expect = 4.260e-132
Identity = 194/286 (67.83%), Postives = 229/286 (80.07%), Query Frame = 1
Query:    1 PLKKAGREYQACCPFHDEKTPSFTVSPAKQFYHCFGCGAHGTALSFLMEYERLEFREAVEALAGQAGMTIPEEARGA--GPDADTQKPLFAVLEQAGRLYQNQLRQSPAAIDYLKSRGITGATAKAFGIGYAPDSWDFLRGQVRDRQAAVTAGMLIEKDNGHAYDRFRNRIMFPIRDGRGRVIGFGGRALGDDPAKYLNSPETPLFHKGRSLYGLFEARQALREIPRMLLVEGYMDVVALAQHGFANAVATLGTATTAEHQNALVRATDELVFCFAGDRAGRDAAW 852
            PLKKAGREYQA CPFHDEK+PSFTVSP KQFYHCFGCGAHGT ++FLMEY+RLEFREA+E LA  AGM +PEE RG   GPD    +PL+ VL +A + Y+ QLRQS  A+ YL+ RGI G  A+ +G+GYAP  WD LR Q+    A V AG+L EKD+GH+YDRFR+R+MFPIRD RGR I FGGR LGDD AKYLNSPETPLFHKGR LYGL+EA+Q  R++ ++L+VEGYMDVVALAQHGF N+VATLGTATTAEH   L R+T+E++FCF GD AG+ A W
Sbjct:   27 PLKKAGREYQARCPFHDEKSPSFTVSPQKQFYHCFGCGAHGTVVNFLMEYDRLEFREAIEELAQAAGMPLPEEVRGQDEGPDY---RPLYDVLARADQFYRQQLRQSDKAVGYLRGRGIAGEIARDYGMGYAPPGWDNLRRQLPQADA-VAAGLLAEKDDGHSYDRFRDRVMFPIRDSRGRTIAFGGRTLGDDSAKYLNSPETPLFHKGRQLYGLYEAKQHSRQLDQILVVEGYMDVVALAQHGFHNSVATLGTATTAEHLQLLFRSTEEVIFCFDGDPAGQRAGW 308          
BLAST of mRNA_C-australica_Contig_9876.1.1 vs. uniprot
Match: A0A084IRL6_SALHC (DNA primase n=2 Tax=Salinisphaera TaxID=180541 RepID=A0A084IRL6_SALHC)

HSP 1 Score: 391 bits (1005), Expect = 1.860e-130
Identity = 189/282 (67.02%), Postives = 222/282 (78.72%), Query Frame = 1
Query:    4 LKKAGREYQACCPFHDEKTPSFTVSPAKQFYHCFGCGAHGTALSFLMEYERLEFREAVEALAGQAGMTIPEEARGAGPDADTQKPLFAVLEQAGRLYQNQLRQSPAAIDYLKSRGITGATAKAFGIGYAPDSWDFLRGQVRDRQAAVTAGMLIEKDNGHAYDRFRNRIMFPIRDGRGRVIGFGGRALGDDPAKYLNSPETPLFHKGRSLYGLFEARQALREIPRMLLVEGYMDVVALAQHGFANAVATLGTATTAEHQNALVRATDELVFCFAGDRAGRDAA 849
            LKKAGREY ACCPFHDEKTPSFTVSP KQFYHCFGCGAHGTA+SFLMEY+RLEFR+AV+ LA  AG+ IPEEA         ++PL   + QA R YQ  LR+ P  IDYLK+RG++G  AK +G+G+A D+WD L  ++ ++ AA  AG+LIE+D+G  +DRFRNR+MFPIRD RGR I FGGR LGDD AKYLNSPETPLFHK   +YGLFEARQA+R++ R+L+VEGYMDV+ALAQHGF NAVATLGTATTA H   L R T E+VFCF GD AG  AA
Sbjct:   28 LKKAGREYTACCPFHDEKTPSFTVSPTKQFYHCFGCGAHGTAISFLMEYDRLEFRDAVDVLADAAGLDIPEEATSQSSSGPPREPLLDAMRQADRHYQAALRRDPGVIDYLKNRGVSGEMAKLYGLGFARDAWDDLTRRLPNKAAAAQAGLLIERDSGGYFDRFRNRLMFPIRDTRGRTIAFGGRTLGDDSAKYLNSPETPLFHKSDHMYGLFEARQAMRQLDRLLVVEGYMDVIALAQHGFPNAVATLGTATTASHLTTLFRHTQEVVFCFDGDAAGVRAA 309          
BLAST of mRNA_C-australica_Contig_9876.1.1 vs. uniprot
Match: UPI000FD727A0 (DNA primase n=1 Tax=Sulfurivermis fontis TaxID=1972068 RepID=UPI000FD727A0)

HSP 1 Score: 387 bits (993), Expect = 1.100e-128
Identity = 195/291 (67.01%), Postives = 224/291 (76.98%), Query Frame = 1
Query:    1 PLKKAGREYQACCPFHDEKTPSFTVSPAKQFYHCFGCGAHGTALSFLMEYERLEFREAVEALAGQAGMTIPEEARGAGPDADTQKPLFAVLEQAGRLYQNQLRQSPA---AIDYLKSRGITGATAKAFGIGYAPDSWDFLR---GQVRDRQ-AAVTAGMLIEKDNGHAYDRFRNRIMFPIRDGRGRVIGFGGRALGDDPAKYLNSPETPLFHKGRSLYGLFEARQALREIPRMLLVEGYMDVVALAQHGFANAVATLGTATTAEHQNALVRATDELVFCFAGDRAGRDAAW 852
            PLKK GRE+ ACCPFH+EKTPSFTVS +KQFYHCFGCGAHGTAL FLMEYE L+F EAVE LA   G+T+P E   + P   + +PL+ ++E++ + YQ QLR+ P    A+DYLK RG++G  A AFGIGYAPD WD L    G  +++Q   +T GMLIEKDNG  YDRFR+RIMFPIRD RGRVI FGGR L     KYLNSPETP+FHKGR LYGLFEA+QALREIPR+L+VEGYMDVVALAQ G  NAVATLGTA T EH   L R T E+VFCF GDRAGRDAAW
Sbjct:   28 PLKKKGREHVACCPFHNEKTPSFTVSQSKQFYHCFGCGAHGTALGFLMEYEHLDFVEAVEKLAAGIGLTVPREGGDSAPRGPSPQPLYELMEKSVQFYQQQLRRHPQRQRAVDYLKKRGLSGEIAAAFGIGYAPDGWDNLLQALGTDKEQQDRLLTVGMLIEKDNGSRYDRFRDRIMFPIRDYRGRVIAFGGRILDKGEPKYLNSPETPIFHKGRELYGLFEAKQALREIPRLLVVEGYMDVVALAQFGIRNAVATLGTAVTKEHLERLFRTTSEVVFCFDGDRAGRDAAW 318          
BLAST of mRNA_C-australica_Contig_9876.1.1 vs. uniprot
Match: UPI000B292FE1 (DNA primase n=2 Tax=Candidatus Thiosymbion oneisti TaxID=589554 RepID=UPI000B292FE1)

HSP 1 Score: 386 bits (991), Expect = 1.890e-128
Identity = 195/294 (66.33%), Postives = 232/294 (78.91%), Query Frame = 1
Query:    4 LKKAGREYQACCPFHDEKTPSFTVSPAKQFYHCFGCGAHGTALSFLMEYERLEFREAVEALAGQAGMTIPEEARG--AGPDADTQKPLFAVLEQAGRLYQNQLRQSPAA---IDYLKSRGITGATAKAFGIGYAPDSWDFLRG------QVRDRQAAVTAGMLIEKDNGHAYDRFRNRIMFPIRDGRGRVIGFGGRALGDDPAKYLNSPETPLFHKGRSLYGLFEARQALREIPRMLLVEGYMDVVALAQHGFANAVATLGTATTAEHQNALVRATDELVFCFAGDRAGRDAAW 852
            L+KAG++YQACCPFHDEKTPSFTVSP KQFYHCFGCGAHG+A+ FLMEYER EFREAVE LA QAGM IP +  G  AGPD    +PL+ +L+Q  +LY+ QLRQ P+A   ++YLK RG++G  A AFG+G+AP  WDFL G      QVR+R   +  G++IE+D G  YDRFR+RIMFPIRD RGRVIGFGGR LGD+  KYLNSPETP+FHKGR LYGL+EA+QA R + R+L+VEGY+DV+ALAQ G   AVATLGTAT+AEH   L+RA  EL+FCF GDRAGRDAAW
Sbjct:   29 LRKAGKDYQACCPFHDEKTPSFTVSPDKQFYHCFGCGAHGSAIGFLMEYERQEFREAVEELAQQAGMEIPVDGEGVRAGPDL---RPLYDLLDQTAQLYRRQLRQHPSAPRAVEYLKGRGLSGEVAAAFGLGFAPPGWDFLLGTLGGSAQVRER--LLQGGLVIEQD-GRRYDRFRDRIMFPIRDRRGRVIGFGGRVLGDEKPKYLNSPETPVFHKGRELYGLYEAQQAKRRLERLLVVEGYLDVIALAQFGITYAVATLGTATSAEHLRLLLRAAPELIFCFDGDRAGRDAAW 316          
BLAST of mRNA_C-australica_Contig_9876.1.1 vs. uniprot
Match: A0A3A5JB05_9GAMM (DNA primase n=1 Tax=Salinisphaera sp. Q1T1-3 TaxID=2321229 RepID=A0A3A5JB05_9GAMM)

HSP 1 Score: 382 bits (982), Expect = 6.150e-127
Identity = 184/282 (65.25%), Postives = 220/282 (78.01%), Query Frame = 1
Query:    4 LKKAGREYQACCPFHDEKTPSFTVSPAKQFYHCFGCGAHGTALSFLMEYERLEFREAVEALAGQAGMTIPEEARGAGPDADTQKPLFAVLEQAGRLYQNQLRQSPAAIDYLKSRGITGATAKAFGIGYAPDSWDFLRGQVRDRQAAVTAGMLIEKDNGHAYDRFRNRIMFPIRDGRGRVIGFGGRALGDDPAKYLNSPETPLFHKGRSLYGLFEARQALREIPRMLLVEGYMDVVALAQHGFANAVATLGTATTAEHQNALVRATDELVFCFAGDRAGRDAA 849
            LKKAGR+Y ACCPFHDE TPSFTVSP KQFY+CFGCGA GTA+SFLMEY+RLEFR+AV+ LA  AGMT+P +     P    + PL   +++A R Y+  LR SP  I YLK RG+TG  A+ FG+G+A D+WD L  ++ D++AA  AG+LIE+DNG  +DRFRNR+MFPIRD RGR I FGGR LGDD AKYLNSPETPLFHK   +YGL+EARQA+R++PR+L+VEGYMDV+ALAQHGF NAVATLGTATTA H   L R T E++FCF GD AG  AA
Sbjct:   28 LKKAGRDYSACCPFHDENTPSFTVSPTKQFYYCFGCGATGTAISFLMEYDRLEFRDAVDVLAQAAGMTLPTDETDDKPTGPPRAPLLEAMQRADRHYRKALRNSPETIAYLKERGVTGDMARCFGLGFAADAWDDLTRRMPDKKAASEAGLLIERDNGGWFDRFRNRLMFPIRDTRGRTIAFGGRTLGDDKAKYLNSPETPLFHKSDQMYGLYEARQAMRDLPRLLVVEGYMDVIALAQHGFPNAVATLGTATTASHLTTLFRHTQEVMFCFDGDSAGVRAA 309          
BLAST of mRNA_C-australica_Contig_9876.1.1 vs. uniprot
Match: UPI0013ED6B7F (DNA primase n=1 Tax=Thioalkalivibrio sp. XN8 TaxID=2712863 RepID=UPI0013ED6B7F)

HSP 1 Score: 372 bits (955), Expect = 4.900e-125
Identity = 187/289 (64.71%), Postives = 222/289 (76.82%), Query Frame = 1
Query:    1 PLKKAGREYQACCPFHDEKTPSFTVSPAKQFYHCFGCGAHGTALSFLMEYERLEFREAVEALAGQAGMTIP-EEARGAGPDADTQKPLFAVLEQAGRLYQNQLRQSPAAIDYLKSRGITGATAKAFGIGYAPDSWD-FLRGQVRDR---QAAVTAGMLIEKDNGHAYDRFRNRIMFPIRDGRGRVIGFGGRALGDDPAKYLNSPETPLFHKGRSLYGLFEARQALREIPRMLLVEGYMDVVALAQHGFANAVATLGTATTAEHQNALVRATDELVFCFAGDRAGRDAAW 852
            PLKKAGREY+ACCPFH EKTPSFTVSP KQFYHCFGCGAHGTAL FLM++E L F EAVE LA  AG+ +P EE++G+    D    L+ +L+     Y+++L++ P AIDYLK+RGI+G TA  FG+G+AP++WD  L+   RD    Q   TAG+L+E+D G  YDRFR R+MFPIRD RGRVI FGGR LG D  KYLNSPETPLFHKGR LYGL+EARQALR+I R+L+VEGYMDVV L + G A AVATLGTATT +H   L R T+E+VFCF GDRAGR AAW
Sbjct:   27 PLKKAGREYKACCPFHGEKTPSFTVSPTKQFYHCFGCGAHGTALGFLMDFEHLSFPEAVEELASLAGLEVPREESQGSERRTD----LYGLLDAVAAFYRDELKRHPPAIDYLKARGISGPTAATFGLGWAPEAWDAVLKRFGRDDETVQRLATAGLLVERDGGGHYDRFRGRVMFPIRDARGRVIAFGGRVLGKDEPKYLNSPETPLFHKGRELYGLYEARQALRQIDRLLVVEGYMDVVGLREAGIAWAVATLGTATTPDHLERLFRVTEEVVFCFDGDRAGRQAAW 311          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_9876.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A423PQX2_9GAMM2.570e-13769.50DNA primase n=2 Tax=Salinisphaera TaxID=180541 Rep... [more]
A0A2E0IY76_9GAMM5.150e-13769.50DNA primase n=2 Tax=Gammaproteobacteria TaxID=1236... [more]
U2E1D3_9GAMM2.930e-13668.20DNA primase n=2 Tax=Salinisphaera TaxID=180541 Rep... [more]
A0A2E5FZG4_9GAMM3.460e-13368.79DNA primase n=2 Tax=Gammaproteobacteria TaxID=1236... [more]
A0A2D4S7R9_9GAMM4.260e-13267.83DNA primase n=1 Tax=Salinisphaeraceae bacterium Ta... [more]
A0A084IRL6_SALHC1.860e-13067.02DNA primase n=2 Tax=Salinisphaera TaxID=180541 Rep... [more]
UPI000FD727A01.100e-12867.01DNA primase n=1 Tax=Sulfurivermis fontis TaxID=197... [more]
UPI000B292FE11.890e-12866.33DNA primase n=2 Tax=Candidatus Thiosymbion oneisti... [more]
A0A3A5JB05_9GAMM6.150e-12765.25DNA primase n=1 Tax=Salinisphaera sp. Q1T1-3 TaxID... [more]
UPI0013ED6B7F4.900e-12564.71DNA primase n=1 Tax=Thioalkalivibrio sp. XN8 TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_9876contigC-australica_Contig_9876:2..853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1033802.SSPSH_003489
Preferred namednaG
PFAMsDnaB_bind,DnaG_DnaB_bind,Toprim_2,Toprim_4,Toprim_N,zf-CHC2
Model size852
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K02316
KEGG Pathwayko03030,map03030
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003896,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0032774,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576
Exons1
Evalue4.81e-137
EggNOG OGsCOG0358@1|root,COG0358@2|Bacteria,1MUHC@1224|Proteobacteria,1RMGA@1236|Gammaproteobacteria
DescriptionRNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
Cds size852
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588854.1256897-CDS-C-australica_Contig_9876:1..8531682588854.1256897-CDS-C-australica_Contig_9876:1..853Chrysoparadoxa australica CS_1217CDSC-australica_Contig_9876 2..853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_9876.1.1prot_C-australica_Contig_9876.1.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_9876 2..853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_9876.1.1

>prot_C-australica_Contig_9876.1.1 ID=prot_C-australica_Contig_9876.1.1|Name=mRNA_C-australica_Contig_9876.1.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=284bp
PLKKAGREYQACCPFHDEKTPSFTVSPAKQFYHCFGCGAHGTALSFLMEY
ERLEFREAVEALAGQAGMTIPEEARGAGPDADTQKPLFAVLEQAGRLYQN
QLRQSPAAIDYLKSRGITGATAKAFGIGYAPDSWDFLRGQVRDRQAAVTA
GMLIEKDNGHAYDRFRNRIMFPIRDGRGRVIGFGGRALGDDPAKYLNSPE
TPLFHKGRSLYGLFEARQALREIPRMLLVEGYMDVVALAQHGFANAVATL
GTATTAEHQNALVRATDELVFCFAGDRAGRDAAW
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mRNA from alignment at C-australica_Contig_9876:2..853+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_9876.1.1 ID=mRNA_C-australica_Contig_9876.1.1|Name=mRNA_C-australica_Contig_9876.1.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=852bp|location=Sequence derived from alignment at C-australica_Contig_9876:2..853+ (Chrysoparadoxa australica CS_1217)
CCGCTGAAGAAGGCGGGCCGGGAATACCAGGCCTGCTGCCCCTTTCACGA CGAGAAAACTCCCTCGTTCACCGTGTCGCCCGCCAAGCAGTTCTACCACT GCTTCGGTTGCGGGGCCCACGGTACTGCCCTGTCGTTTCTGATGGAATAC GAGCGGCTGGAATTCCGCGAGGCCGTGGAGGCCCTGGCCGGGCAGGCCGG CATGACCATCCCCGAGGAAGCCCGCGGCGCCGGTCCGGATGCGGACACCC AGAAACCGCTGTTCGCGGTGCTGGAGCAGGCCGGCCGGCTGTACCAGAAC CAGCTTCGCCAAAGTCCGGCGGCCATCGACTACCTGAAATCCCGCGGTAT TACCGGCGCCACCGCCAAGGCCTTCGGCATCGGCTACGCGCCGGACAGCT GGGATTTCCTGCGCGGCCAGGTACGCGACCGCCAGGCTGCGGTCACCGCC GGGATGCTGATCGAGAAGGACAACGGCCACGCCTACGACCGCTTCCGCAA CCGCATCATGTTCCCCATCCGCGACGGCCGCGGGCGGGTAATCGGCTTCG GCGGGCGGGCGCTCGGCGACGACCCGGCCAAGTATCTGAATTCCCCCGAA ACCCCGCTGTTCCACAAGGGCCGTTCGCTCTACGGCCTGTTCGAGGCCCG CCAGGCGCTGCGGGAGATTCCCCGCATGCTGCTGGTGGAGGGCTACATGG ACGTGGTGGCCCTAGCCCAGCACGGTTTCGCCAACGCCGTGGCCACGCTG GGCACCGCTACCACCGCAGAGCACCAGAACGCGCTGGTCCGCGCCACCGA TGAACTTGTGTTCTGCTTCGCTGGCGACCGCGCCGGCCGCGACGCCGCCT GG
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Coding sequence (CDS) from alignment at C-australica_Contig_9876:2..853+

>mRNA_C-australica_Contig_9876.1.1 ID=mRNA_C-australica_Contig_9876.1.1|Name=mRNA_C-australica_Contig_9876.1.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=852bp|location=Sequence derived from alignment at C-australica_Contig_9876:2..853+ (Chrysoparadoxa australica CS_1217)
CCGCTGAAGAAGGCGGGCCGGGAATACCAGGCCTGCTGCCCCTTTCACGA
CGAGAAAACTCCCTCGTTCACCGTGTCGCCCGCCAAGCAGTTCTACCACT
GCTTCGGTTGCGGGGCCCACGGTACTGCCCTGTCGTTTCTGATGGAATAC
GAGCGGCTGGAATTCCGCGAGGCCGTGGAGGCCCTGGCCGGGCAGGCCGG
CATGACCATCCCCGAGGAAGCCCGCGGCGCCGGTCCGGATGCGGACACCC
AGAAACCGCTGTTCGCGGTGCTGGAGCAGGCCGGCCGGCTGTACCAGAAC
CAGCTTCGCCAAAGTCCGGCGGCCATCGACTACCTGAAATCCCGCGGTAT
TACCGGCGCCACCGCCAAGGCCTTCGGCATCGGCTACGCGCCGGACAGCT
GGGATTTCCTGCGCGGCCAGGTACGCGACCGCCAGGCTGCGGTCACCGCC
GGGATGCTGATCGAGAAGGACAACGGCCACGCCTACGACCGCTTCCGCAA
CCGCATCATGTTCCCCATCCGCGACGGCCGCGGGCGGGTAATCGGCTTCG
GCGGGCGGGCGCTCGGCGACGACCCGGCCAAGTATCTGAATTCCCCCGAA
ACCCCGCTGTTCCACAAGGGCCGTTCGCTCTACGGCCTGTTCGAGGCCCG
CCAGGCGCTGCGGGAGATTCCCCGCATGCTGCTGGTGGAGGGCTACATGG
ACGTGGTGGCCCTAGCCCAGCACGGTTTCGCCAACGCCGTGGCCACGCTG
GGCACCGCTACCACCGCAGAGCACCAGAACGCGCTGGTCCGCGCCACCGA
TGAACTTGTGTTCTGCTTCGCTGGCGACCGCGCCGGCCGCGACGCCGCCT
GG
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