mRNA_C-australica_Contig_983.9.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_983.9.1
Unique NamemRNA_C-australica_Contig_983.9.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_983.9.1 vs. uniprot
Match: A0A835YV61_9STRA (Bicarbonate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV61_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.220e-22
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 2
Query:    2 VRLVNSKEHKMKKGHGYHLDMAALSLLIASSSVLGLPWLVAATVRSLAHVKALAKFEASE--GKEEITGITEQRVS 223
            VRLVN++EHK+KKG G HLDMAA++ L+A  SVLGLPWLVAATVRSLAHV+ALA++E  +  G E I  +TE RVS
Sbjct:  321 VRLVNAREHKLKKGFGLHLDMAAIAALVAGCSVLGLPWLVAATVRSLAHVRALARYERRDDGGGEAIAAMTETRVS 396          
BLAST of mRNA_C-australica_Contig_983.9.1 vs. uniprot
Match: A0A6H5JQF4_9PHAE (HCO3_cotransp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF4_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-19
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 2
Query:    2 VRLVNSKEHKMKKGHGYHLDMAALSLLIASSSVLGLPWLVAATVRSLAHVKALAKFEA-SEGK-EEITGITEQRVS 223
            VRLVN+K+HK+KKG+G +LDM  ++ L A+ SV GLPWLVAATVRSLAHVK+L K++    G+ E I G+ EQRVS
Sbjct:   62 VRLVNAKQHKLKKGYGMNLDMGIIAGLTAACSVFGLPWLVAATVRSLAHVKSLTKYDQLGWGRGERIAGVAEQRVS 137          
BLAST of mRNA_C-australica_Contig_983.9.1 vs. uniprot
Match: A0A7S0DU45_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DU45_9CRYP)

HSP 1 Score: 88.6 bits (218), Expect = 8.500e-19
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 2
Query:    2 VRLVNSKEHKMKKGHGYHLDMAALSLLIASSSVLGLPWLVAATVRSLAHVKALAKFEASEGKEEITGITEQRVS 223
            VRLVNS +HK+KKGHGY LD+  ++LL   SSV+G PWLVAATVRSLAHV+A   +E+  G   + G+ EQRV+
Sbjct:  357 VRLVNSDKHKLKKGHGYDLDLLIIALLTGGSSVIGFPWLVAATVRSLAHVRANTVYES--GTANVQGVLEQRVT 428          
BLAST of mRNA_C-australica_Contig_983.9.1 vs. uniprot
Match: D7FMX9_ECTSI (Boron transporter 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMX9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 8.790e-19
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 2
Query:    2 VRLVNSKEHKMKKGHGYHLDMAALSLLIASSSVLGLPWLVAATVRSLAHVKALAKFEA-SEGK-EEITGITEQRVS 223
            VRLVN+K+HK+KKG+G +LDM  ++ L A+ SV GLPWLVAATVRSLAHVK+L K++    G+ E I G+ EQRVS
Sbjct:  584 VRLVNAKQHKLKKGYGMNLDMGIIAGLTAACSVFGLPWLVAATVRSLAHVKSLTKYDQLGWGRGERIAGVAEQRVS 659          
BLAST of mRNA_C-australica_Contig_983.9.1 vs. uniprot
Match: A0A7S4PNM8_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PNM8_GUITH)

HSP 1 Score: 85.5 bits (210), Expect = 1.040e-17
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 2
Query:    2 VRLVNSKEHKMKKGHGYHLDMAALSLLIASSSVLGLPWLVAATVRSLAHVKALAKFEASEGKEEITGITEQRVS 223
            VRLVNS +HK+KKGHGY LD+  ++LL    SV+G PWLVAATVRSLAHV+A   +++  G   + G+ EQRV+
Sbjct:  379 VRLVNSDKHKLKKGHGYDLDLLIIALLTGGCSVIGFPWLVAATVRSLAHVRANTVYQS--GTTNVQGVLEQRVT 450          
BLAST of mRNA_C-australica_Contig_983.9.1 vs. uniprot
Match: A0A0G4GX26_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GX26_VITBC)

HSP 1 Score: 84.0 bits (206), Expect = 3.640e-17
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 2
Query:    2 VRLVNSKEHKMKKGHGYHLDMAALSLLIASSSVLGLPWLVAATVRSLAHVKALAKFEASEGKEE---ITGITEQRVS 223
            VRLVNS +HK+KK +GY LD+A L++    SSVLGLPWLVAATVRSL HV+++  F+ S+G ++   + G  EQRV+
Sbjct:  374 VRLVNSNKHKLKKPNGYDLDLATLTVTTGISSVLGLPWLVAATVRSLNHVRSVMNFDYSKGGDDSSAVVGCDEQRVT 450          
BLAST of mRNA_C-australica_Contig_983.9.1 vs. uniprot
Match: T1G3A7_HELRO (Anion exchange protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G3A7_HELRO)

HSP 1 Score: 82.0 bits (201), Expect = 1.760e-16
Identity = 39/75 (52.00%), Postives = 56/75 (74.67%), Query Frame = 2
Query:    8 LVNSKEHKMKKGHGYHLDMAALSLLIASSSVLGLPWLVAATVRSLAHVKAL---AKFEASEGKEEITGITEQRVS 223
            ++N KEHK+KKGHGYHLD+  L++LIA  S LGLPW VAATVR++ HVK+L   ++ +    + ++ G+ EQRV+
Sbjct:  692 IINRKEHKLKKGHGYHLDLFVLAILIAICSFLGLPWFVAATVRAITHVKSLIRESEVKIPGERPQMLGVREQRVT 766          
BLAST of mRNA_C-australica_Contig_983.9.1 vs. uniprot
Match: A0A4D9DEQ9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEQ9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.370e-16
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 2
Query:    2 VRLVNSKEHKMKKGHGYHLDMAALSLLIASSSVLGLPWLVAATVRSLAHVKALAKFEASE-GKEEITGITEQRVS 223
            VRLVNS  HK+KKG+G HLDM  +S+L   +S+ GLPWLVAATVRSL HV+A A+F+++E G+  I  + E R++
Sbjct:  398 VRLVNSPSHKIKKGYGLHLDMFVVSILTFINSLFGLPWLVAATVRSLNHVRACARFKSTEDGEVVIESMQENRLT 472          
BLAST of mRNA_C-australica_Contig_983.9.1 vs. uniprot
Match: A0A0S3Q293_9ANNE (Anion exchange protein (Fragment) n=1 Tax=Osedax japonicus TaxID=385425 RepID=A0A0S3Q293_9ANNE)

HSP 1 Score: 81.6 bits (200), Expect = 2.400e-16
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 2
Query:    8 LVNSKEHKMKKGHGYHLDMAALSLLIASSSVLGLPWLVAATVRSLAHVKALAK---FEASEGKEEITGITEQRVS 223
            +VN KEHK+KKGHGYHLD+  LS L+   S LGLPW VAATVR++ HV++L K    +A   + ++ G+ EQRV+
Sbjct:  616 IVNRKEHKLKKGHGYHLDLFILSFLVGICSWLGLPWFVAATVRTITHVRSLIKESDLKAPGERPQMLGVREQRVT 690          
BLAST of mRNA_C-australica_Contig_983.9.1 vs. uniprot
Match: A0A401UCZ2_9BACT (HCO3-transporter n=1 Tax=Chryseotalea sanaruensis TaxID=2482724 RepID=A0A401UCZ2_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 3.170e-16
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 2
Query:    2 VRLVNSKEHKMKKGHGYHLDMAALSLLIASSSVLGLPWLVAATVRSLAHVKALAKF-----EASEGKEEITGITEQRVS 223
             RLVNSKE K+KKG GYHLD+A + +++   S   LPW+VAATV SL HVK+LA       E  E KE IT + E RVS
Sbjct:  304 TRLVNSKEFKLKKGSGYHLDLAIVGIIVLVGSFFALPWIVAATVHSLNHVKSLADTNVVATEKGENKEVITAVRENRVS 382          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_983.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YV61_9STRA1.220e-2267.11Bicarbonate transporter n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JQF4_9PHAE1.300e-1961.84HCO3_cotransp domain-containing protein n=1 Tax=Ec... [more]
A0A7S0DU45_9CRYP8.500e-1959.46Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
D7FMX9_ECTSI8.790e-1961.84Boron transporter 1 n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S4PNM8_GUITH1.040e-1756.76Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A0G4GX26_VITBC3.640e-1755.84Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
T1G3A7_HELRO1.760e-1652.00Anion exchange protein n=1 Tax=Helobdella robusta ... [more]
A0A4D9DEQ9_9STRA2.370e-1656.00Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A0S3Q293_9ANNE2.400e-1653.33Anion exchange protein (Fragment) n=1 Tax=Osedax j... [more]
A0A401UCZ2_9BACT3.170e-1654.43HCO3-transporter n=1 Tax=Chryseotalea sanaruensis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_983contigC-australica_Contig_983:5215..5523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMX9
PFAMsHCO3_cotransp
Model size232
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue3.01e-13
EggNOG OGsKOG1172@1|root,KOG1172@2759|Eukaryota
Descriptioninorganic anion exchanger activity
Cds size201
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588850.1376383-CDS-C-australica_Contig_983:5214..53761682588850.1376383-CDS-C-australica_Contig_983:5214..5376Chrysoparadoxa australica CS_1217CDSC-australica_Contig_983 5215..5376 -
1682588850.151637-CDS-C-australica_Contig_983:5453..54921682588850.151637-CDS-C-australica_Contig_983:5453..5492Chrysoparadoxa australica CS_1217CDSC-australica_Contig_983 5454..5492 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588850.1650016-UTR-C-australica_Contig_983:5492..55231682588850.1650016-UTR-C-australica_Contig_983:5492..5523Chrysoparadoxa australica CS_1217UTRC-australica_Contig_983 5493..5523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_983.9.1prot_C-australica_Contig_983.9.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_983 5215..5492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_983.9.1

>prot_C-australica_Contig_983.9.1 ID=prot_C-australica_Contig_983.9.1|Name=mRNA_C-australica_Contig_983.9.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=67bp
MKKGHGYHLDMAALSLLIASSSVLGLPWLVAATVRSLAHVKALAKFEASE
GKEEITGITEQRVSDA*
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mRNA from alignment at C-australica_Contig_983:5215..5523-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_983.9.1 ID=mRNA_C-australica_Contig_983.9.1|Name=mRNA_C-australica_Contig_983.9.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=309bp|location=Sequence derived from alignment at C-australica_Contig_983:5215..5523- (Chrysoparadoxa australica CS_1217)
GGTGCGATTGGTTAACAGCAAGGAGCACAAGATGAAGAAGGGACATGGCT ACCACCTAGACATGGCTGCTGTACGTGACTTGACTTGCCAGTTCCTCTAG TGCTCCCAGCCCTGCTCTCACTCATCCGATCTCTCTCTCTCTTCCAGTTA TCGCTCCTCATAGCCAGCAGCAGCGTGCTTGGGCTGCCTTGGCTGGTTGC TGCCACAGTGCGTTCGCTGGCCCACGTCAAGGCTCTTGCCAAGTTTGAGG CCAGTGAAGGCAAGGAGGAGATCACAGGCATCACGGAGCAGAGGGTGAGT GACGCTTAA
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Coding sequence (CDS) from alignment at C-australica_Contig_983:5215..5523-

>mRNA_C-australica_Contig_983.9.1 ID=mRNA_C-australica_Contig_983.9.1|Name=mRNA_C-australica_Contig_983.9.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=201bp|location=Sequence derived from alignment at C-australica_Contig_983:5215..5523- (Chrysoparadoxa australica CS_1217)
ATGAAGAAGGGACATGGCTACCACCTAGACATGGCTGCTTTATCGCTCCT
CATAGCCAGCAGCAGCGTGCTTGGGCTGCCTTGGCTGGTTGCTGCCACAG
TGCGTTCGCTGGCCCACGTCAAGGCTCTTGCCAAGTTTGAGGCCAGTGAA
GGCAAGGAGGAGATCACAGGCATCACGGAGCAGAGGGTGAGTGACGCTTA
A
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