mRNA_C-australica_Contig_983.2.1 (mRNA) Chrysoparadoxa australica CS_1217

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-australica_Contig_983.2.1
Unique NamemRNA_C-australica_Contig_983.2.1
TypemRNA
OrganismChrysoparadoxa australica CS_1217 (Chrysoparadoxa australica CS_1217)
Homology
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: A0A835YMG5_9STRA (Vitamin B6 photo-protection and homoeostasis-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.360e-15
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157
            +LP GYPDSV P Y  Y+RWQ  SMV +SA+GV+STQALLHAVGLG+GA+P
Sbjct:   85 ILPAGYPDSVRPGYARYVRWQLSSMVCTSAAGVLSTQALLHAVGLGAGAVP 135          
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: A0A835YUA2_9STRA (Vitamin B6 photo-protection and homoeostasis-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.710e-14
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 2
Query:    5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157
            +LP GYP++V   Y  Y  WQF SMV SSA+GV+STQALLHAVGLGSGAIP
Sbjct:    4 ILPAGYPEAVNAGYGSYTGWQFTSMVFSSAAGVLSTQALLHAVGLGSGAIP 54          
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: D8LJS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS3_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.340e-12
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 2
Query:    5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157
            VLP G+P SV P Y  Y  WQF  M AS+A+GVMSTQALL+A+GLG+GA+P
Sbjct:    5 VLPSGFPASVHPPYMAYAGWQFTGMAASAAAGVMSTQALLYAMGLGAGALP 55          
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: A0A6H5L0I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I8_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.600e-11
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 2
Query:    5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157
            VLP G+P SV P Y  Y  WQF  M AS+A+GVMSTQALL+A+G+G GA+P
Sbjct:  176 VLPSGFPGSVHPPYMAYAGWQFTGMAASAAAGVMSTQALLYAMGVGVGALP 226          
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: M8AEK8_TRIUA (Uncharacterized protein n=2 Tax=Triticum TaxID=4564 RepID=M8AEK8_TRIUA)

HSP 1 Score: 63.5 bits (153), Expect = 4.460e-11
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 2
Query:    5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157
            +LP GYP SV   Y HY  W+ +  VAS  SGV+STQALL+AVGLG GAIP
Sbjct:   64 LLPDGYPHSVSSDYLHYSLWRGVQGVASQISGVLSTQALLYAVGLGKGAIP 114          
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: A0A5A8CKM9_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKM9_CAFRO)

HSP 1 Score: 65.1 bits (157), Expect = 5.580e-11
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 2
Query:    5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157
            VLP GYP SV PSY  Y  W  +   AS+A+GV+S QALLHAVG G+GA+P
Sbjct:   87 VLPQGYPVSVAPSYAQYAAWSAVGSTASAAAGVLSMQALLHAVGAGAGAVP 137          
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: A0A0D2WSA8_CAPO3 (Uncharacterized protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WSA8_CAPO3)

HSP 1 Score: 65.1 bits (157), Expect = 5.600e-11
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:    8 LPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157
            LP GYP SV P+Y  Y RWQ +  V  + +GV+STQALL+AVGLG+GAIP
Sbjct:  328 LPKGYPHSVTPNYMGYSRWQAVQSVTGTMTGVLSTQALLYAVGLGAGAIP 377          
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: UPI001F5D0A40 (protein root UVB sensitive 1, chloroplastic-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D0A40)

HSP 1 Score: 64.3 bits (155), Expect = 1.040e-10
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 2
Query:    5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157
            +LP GYP SV   Y HY  W+ +  VAS  SGV+STQALL+AVGLG GAIP
Sbjct:  198 LLPDGYPHSVSSDYMHYSLWRGVQGVASQISGVLSTQALLYAVGLGKGAIP 248          
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: A0A833VEA6_9POAL (Protein root UVB sensitive 1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VEA6_9POAL)

HSP 1 Score: 63.9 bits (154), Expect = 1.430e-10
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 2
Query:    5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157
            +LPHGYP SV   Y  Y  W+ +  +AS  SGV+STQALL+AVGLG GAIP
Sbjct:  196 MLPHGYPYSVSADYMEYSLWRGVQGIASQVSGVLSTQALLYAVGLGKGAIP 246          
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Match: I1IWN3_BRADI (Uncharacterized protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1IWN3_BRADI)

HSP 1 Score: 63.9 bits (154), Expect = 1.430e-10
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 2
Query:    5 VLPHGYPDSVPPSYQHYMRWQFLSMVASSASGVMSTQALLHAVGLGSGAIP 157
            +LP GYP+SV   Y HY  W+ L  VAS  SGV+STQALL+AVGLG G IP
Sbjct:  206 LLPDGYPNSVSSDYLHYSLWRGLQGVASQISGVLSTQALLYAVGLGKGVIP 256          
The following BLAST results are available for this feature:
BLAST of mRNA_C-australica_Contig_983.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YMG5_9STRA1.360e-1570.59Vitamin B6 photo-protection and homoeostasis-domai... [more]
A0A835YUA2_9STRA7.710e-1470.59Vitamin B6 photo-protection and homoeostasis-domai... [more]
D8LJS3_ECTSI3.340e-1264.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0I8_9PHAE1.600e-1162.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
M8AEK8_TRIUA4.460e-1162.75Uncharacterized protein n=2 Tax=Triticum TaxID=456... [more]
A0A5A8CKM9_CAFRO5.580e-1160.78Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A0D2WSA8_CAPO35.600e-1162.00Uncharacterized protein n=2 Tax=Capsaspora owczarz... [more]
UPI001F5D0A401.040e-1062.75protein root UVB sensitive 1, chloroplastic-like n... [more]
A0A833VEA6_9POAL1.430e-1060.78Protein root UVB sensitive 1 n=1 Tax=Carex littled... [more]
I1IWN3_BRADI1.430e-1062.75Uncharacterized protein n=1 Tax=Brachypodium dista... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-australica_Contig_983contigC-australica_Contig_983:946..1312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Chrysoparadoxa australica CS_1217 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size160
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682588850.0932474-CDS-C-australica_Contig_983:945..10431682588850.0932474-CDS-C-australica_Contig_983:945..1043Chrysoparadoxa australica CS_1217CDSC-australica_Contig_983 946..1043 +
1682588850.105585-CDS-C-australica_Contig_983:1250..13111682588850.105585-CDS-C-australica_Contig_983:1250..1311Chrysoparadoxa australica CS_1217CDSC-australica_Contig_983 1251..1311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-australica_Contig_983.2.1prot_C-australica_Contig_983.2.1Chrysoparadoxa australica CS_1217polypeptideC-australica_Contig_983 946..1311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-australica_Contig_983.2.1

>prot_C-australica_Contig_983.2.1 ID=prot_C-australica_Contig_983.2.1|Name=mRNA_C-australica_Contig_983.2.1|organism=Chrysoparadoxa australica CS_1217|type=polypeptide|length=53bp
QGATPWVPGQCPPILPTLHAVAVPIYGCFICLRCHVHTGLAACSWSWLGS
HSH
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mRNA from alignment at C-australica_Contig_983:946..1312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-australica_Contig_983.2.1 ID=mRNA_C-australica_Contig_983.2.1|Name=mRNA_C-australica_Contig_983.2.1|organism=Chrysoparadoxa australica CS_1217|type=mRNA|length=367bp|location=Sequence derived from alignment at C-australica_Contig_983:946..1312+ (Chrysoparadoxa australica CS_1217)
CAAGGTGCTACCCCATGGGTACCCGGACAGTGTCCCCCCATCCTACCAAC ATTACATGCGGTGGCAGTTCCTATCTATGGTTGCTTCATCTGCCTCAGGT TTCGAAAACTTCTCAGAAACTTTTCAGCTGCCACGCCGCCCCACTAGCTG TCTCAACCCTGATGTCTTACATCAAGACCTCCAGTCATGTATACCTGCTG CTTTGTTGCAAACCCATTCACTCAACTCACTCTCGTCTCCTGTGCACGTA AACCCCCTCACGTGCCACCACTCAACCAGTCACTCATTCTTGCACTCTGC TGCAGGTGTCATGTCCACACAGGCCTTGCTGCATGCAGTTGGTCTTGGCT CGGGAGCCATTCCCATA
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Coding sequence (CDS) from alignment at C-australica_Contig_983:946..1312+

>mRNA_C-australica_Contig_983.2.1 ID=mRNA_C-australica_Contig_983.2.1|Name=mRNA_C-australica_Contig_983.2.1|organism=Chrysoparadoxa australica CS_1217|type=CDS|length=159bp|location=Sequence derived from alignment at C-australica_Contig_983:946..1312+ (Chrysoparadoxa australica CS_1217)
CAAGGTGCTACCCCATGGGTACCCGGACAGTGTCCCCCCATCCTACCAAC
ATTACATGCGGTGGCAGTTCCTATCTATGGTTGCTTCATCTGCCTCAGGT
GTCATGTCCACACAGGCCTTGCTGCATGCAGTTGGTCTTGGCTCGGGAGC
CATTCCCAT
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